| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 2145164 | NA (NA) | 10 (0.030) | 7/90 | NT | NA | noncoding (10/28 nt) | REP148 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP148 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | = 2145172 | NA (NA) | noncoding (18/28 nt) | REP148 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP148 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
Only 100 of 352 total aligned reads displayed.
CGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCA > CP009273/2145100‑2145231 | tAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAATtgttgt < 1:6984854/67‑1 (MQ=255) tAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAATtgttgt < 1:27528174/67‑1 (MQ=255) tAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAATtgttgt < 1:13792367/67‑1 (MQ=255) tAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAATtgttgt < 1:29811889/67‑1 (MQ=255) tAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAATtgttgt < 1:15390173/67‑1 (MQ=255) gCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCttca < 1:8258862‑M2/67‑5 (MQ=255) aaaTTAGTTCGCTAATCAGCCGTTATATTTATTGGTTAAACTGGCGGTTGAATTGTTGTCttcaaccg > 1:27216525‑M2/1‑60 (MQ=255) aaTTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCttcaaccgc > 1:28947032‑M2/1‑59 (MQ=255) aaTTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCttcaaccgc > 1:20283403‑M2/1‑59 (MQ=255) aaTTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCttcaaccgc > 1:26238761‑M2/1‑59 (MQ=255) aaTTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCttcaaccgc > 1:17760968‑M2/1‑59 (MQ=255) aTTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCttcaaccgcc < 1:20606965‑M2/68‑11 (MQ=255) aTTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCttcaaccgcc < 1:18685393‑M2/68‑11 (MQ=255) ttCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATgag > 1:7594136/1‑68 (MQ=255) tCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATga < 1:30778696/66‑1 (MQ=255) tCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATga < 1:31554336/66‑1 (MQ=255) tCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATga < 1:16862718/66‑1 (MQ=255) cGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGaa < 1:11252806/68‑1 (MQ=255) cGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGaa < 1:19658300/68‑1 (MQ=255) gCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGaaa < 1:2293601/68‑1 (MQ=255) gCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGaaa < 1:14648803/68‑1 (MQ=255) aaTCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAactc > 1:13169674/1‑68 (MQ=255) aTCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAactca < 1:23553641/68‑1 (MQ=255) tCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAactcac < 1:24119600/68‑1 (MQ=255) tCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAactcac < 1:3117754/68‑1 (MQ=255) tCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAactc > 1:15218634/1‑66 (MQ=255) gCCGTTATATTTATTGTTTAAACTGGCGGTTGAAgacaacaattcaaccgccagtttaaacaataaat > 1:30380663‑M1/1‑34 (MQ=255) cGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAactcactc < 1:3998310/65‑1 (MQ=255) cGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAactcactc < 1:7273298/65‑1 (MQ=255) cGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCActct < 1:354905/66‑1 (MQ=255) cGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTg > 1:19367206/1‑67 (MQ=255) cGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTg < 1:4562358/67‑1 (MQ=255) tataTTTATTGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGccc < 1:20170469/67‑1 (MQ=255) tataTTTATTGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCca < 1:33353371/68‑1 (MQ=255) tatttattGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCcaca > 1:27923775/1‑68 (MQ=255) tatttattGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCcaca > 1:30430000/1‑68 (MQ=255) tatttattGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCcaca > 1:12032332/1‑68 (MQ=255) tatttattGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCcaca > 1:18646046/1‑68 (MQ=255) tatttattGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCcaca > 1:5690446/1‑68 (MQ=255) atttattGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCcaca > 1:28198580/1‑67 (MQ=255) atttattGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCcaca > 1:20847018/1‑67 (MQ=255) ttattGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAgcg < 1:8008287/68‑1 (MQ=255) ttattGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAgc > 1:21918547/1‑67 (MQ=255) ttattGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAgc > 1:33186787/1‑67 (MQ=255) ttattGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAgc > 1:25047077/1‑67 (MQ=255) ttattGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAgc > 1:24837136/1‑67 (MQ=255) ttattGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAgc > 1:6619034/1‑67 (MQ=255) ttattGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAgc > 1:9676520/1‑67 (MQ=255) ttattGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAgc > 1:16021346/1‑67 (MQ=255) tattGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAgcgc < 1:12583916/68‑1 (MQ=255) ttGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCa > 1:2327363/1‑68 (MQ=255) ttGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCa > 1:24371925/1‑68 (MQ=255) tGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAg > 1:21292037/1‑68 (MQ=255) tGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAg > 1:11698856/1‑68 (MQ=255) tGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAg > 1:3063672/1‑68 (MQ=255) gTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGt > 1:24056862/1‑68 (MQ=255) ttAAACTGGCGGTTGAATTGTTGTCttcaaccgccagtttaaacaataaatataacggctgattagcg > 1:14405579‑M2/1‑25 (MQ=255) ttAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTg < 1:13230838/67‑1 (MQ=255) aaaCTGGCGGTTGAATTGTTGTCttcaaccgccagtttaaacaataaatataacggctgattagcgaa > 1:25353124‑M2/1‑23 (MQ=255) aCTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAAc > 1:2451057/1‑68 (MQ=255) aCTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAAc > 1:1797045/1‑68 (MQ=255) aCTGGCGGTTGAATTGTTGTCCTCAACCGCCATGAGTAACTCACTCTGCCCACAGCGCCAGTGCCAAc > 1:8820919/1‑68 (MQ=255) cTGGCGGTTGAATTGTTGTCTTCCACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACg < 1:22872659/68‑1 (MQ=255) cTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACg < 1:4120557/68‑1 (MQ=255) cTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACg < 1:5204251/68‑1 (MQ=255) cTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACg > 1:26085124/1‑68 (MQ=255) cTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACg > 1:31690945/1‑68 (MQ=255) cTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACg > 1:3436992/1‑68 (MQ=255) cTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACg < 1:20739863/68‑1 (MQ=255) cTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACg < 1:22309559/68‑1 (MQ=255) cTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACg > 1:17751792/1‑68 (MQ=255) cTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACg < 1:19182287/68‑1 (MQ=255) tGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGt < 1:21703351/68‑1 (MQ=255) tGGCGGTTGAATTGTGGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGt < 1:22640778/68‑1 (MQ=255) ggCGGTTGAAgacaacaattcaatcgccagtttaaacaataaatataacggctgattagcgaactaat > 1:5854270‑M1/1‑10 (MQ=255) ggCGGTTGAAgacaacaattcaaccgccagtttaaacaataaatataacggctgattagcgaactaat < 1:5484145‑M1/68‑59 (MQ=255) ggCGGTTGAAgacaacaattcaaccgccagtttaaacaataaatataacggctgattagcgaactaat < 1:33561497‑M1/68‑59 (MQ=255) ggCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGtt < 1:10685848/68‑1 (MQ=255) ggCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGtt < 1:6058818/68‑1 (MQ=255) gCGGTTGAAgacaacaattcaaccgccagtttaaacaataaatataacggctgattagcgaactaatt > 1:2022370‑M1/1‑9 (MQ=255) gCGGTTGAAgacaacaattcaaccgccagtttaaacaataaatataacggctgattagcgaactaatt > 1:28422565‑M1/1‑9 (MQ=255) ttGTATTGTTGTCTTCAACCGCCATCTGAAACTAACTGTGCCCACAGCGCCAGTGCCAACGTTTTat < 1:32513792/67‑1 (MQ=255) ttGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTat < 1:14225939/67‑1 (MQ=255) ttGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTat < 1:9270703/67‑1 (MQ=255) ttGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTat < 1:32036986/67‑1 (MQ=255) ttGAATTGTTGTATTCAACCGCCATTAGAAACTCACTCTTCCCACAGCGCCAGTGCCAACGTTTTat < 1:4940518/67‑1 (MQ=255) tcaataGTTGTCttcaaccgccagtttaaacaataaatataacggctgattagcgaactaattttgc > 1:17358305‑M2/3‑12 (MQ=255) tGAAgacaacaattcaaccgccagtttaaactataaatataacggctgattagcgaactaattttgc < 1:7444580‑M1/67‑64 (MQ=255) tGAAgacaacaattcaaccgccagtttaaacaataaatataacggctgattagcgaactaattttgct < 1:19105029‑M1/68‑65 (MQ=255) tGAAgacaacaattcaaccgccagtttaaacaataaatataacggctgattagcgaactaaatttgc < 1:26160579‑M1/67‑64 (MQ=255) tGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTatca < 1:50580/68‑1 (MQ=255) tGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTatca < 1:33793503/68‑1 (MQ=255) ggaATTGTTGTCttcaaccgccagtttaaacaataaatataacggctgattagcgaactaattttgct > 1:30039881‑M2/2‑12 (MQ=255) gAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTatca > 1:2673658/1‑67 (MQ=255) aagacaacaattcaaccgccagtttaaacaataaatataacggctgattagcgaactaattttgctct > 1:25576911‑M1/1‑2 (MQ=255) aTTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTatcatca < 1:23146509/68‑1 (MQ=255) aTTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTatcatca < 1:10162973/68‑1 (MQ=255) aTTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTatcatca > 1:27694261/1‑68 (MQ=255) aTTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTatcatca < 1:32256056/68‑1 (MQ=255) aTTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTatcatca > 1:29207238/1‑68 (MQ=255) | CGAGCTAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCA > CP009273/2145100‑2145231 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |