| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 2145164 | NA (NA) | 10 (0.030) | 7/90 | NT | NA | noncoding (10/28 nt) | REP148 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP148 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | = 2145172 | NA (NA) | noncoding (18/28 nt) | REP148 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP148 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
Only 100 of 319 total aligned reads displayed.
AAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTAC > CP009273/2145106‑2145238 | agCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCttca < 1:19105029‑M2/68‑5 (MQ=255) gCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCttca < 1:8258862‑M2/67‑5 (MQ=255) aaTTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCttcaaccgc > 1:20283403‑M2/1‑59 (MQ=255) aaTTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCttcaaccgc > 1:17760968‑M2/1‑59 (MQ=255) aaTTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCttcaaccgc > 1:17619248‑M2/1‑59 (MQ=255) aaTTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCttcaaccgc > 1:22728816‑M2/1‑59 (MQ=255) aTTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCttcaaccgcc < 1:5484145‑M2/68‑11 (MQ=255) aTTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCttcaaccgcc < 1:24750171‑M2/68‑11 (MQ=255) tCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATgaga < 1:32214442/68‑1 (MQ=255) tCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATga < 1:5991510/66‑1 (MQ=255) tCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATga < 1:16862718/66‑1 (MQ=255) tCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATga < 1:23335708/66‑1 (MQ=255) tCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATga < 1:31554336/66‑1 (MQ=255) cGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGaa < 1:19658300/68‑1 (MQ=255) gCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGaaa < 1:14689993/68‑1 (MQ=255) aaTCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAactc > 1:13169674/1‑68 (MQ=255) tCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAactcac < 1:26174313/68‑1 (MQ=255) tCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAactcac < 1:18871076/68‑1 (MQ=255) tCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAactcac < 1:3117754/68‑1 (MQ=255) tCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAactcac < 1:12011131/68‑1 (MQ=255) tCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAactc > 1:15218634/1‑66 (MQ=255) tCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAactc > 1:14112940/1‑66 (MQ=255) gCCGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAactcac > 1:11048733/1‑65 (MQ=255) cGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAactcactc < 1:7273298/65‑1 (MQ=255) cGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAactcactc < 1:3998310/65‑1 (MQ=255) cGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCActct < 1:354905/66‑1 (MQ=255) cGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTg > 1:2225726/1‑67 (MQ=255) cGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGc < 1:30783351/68‑1 (MQ=255) cGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGc < 1:792010/68‑1 (MQ=255) cGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGc < 1:6833660/68‑1 (MQ=255) cGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGc < 1:25676606/68‑1 (MQ=255) tataTTTATTGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGccc < 1:20170469/67‑1 (MQ=255) tatttattGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCcaca > 1:27923775/1‑68 (MQ=255) tatttattGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCcaca > 1:30430000/1‑68 (MQ=255) tatttattGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCcaca > 1:5690446/1‑68 (MQ=255) tatttattGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCcaca > 1:24119131/1‑68 (MQ=255) ttattGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAgcg < 1:4719908/68‑1 (MQ=255) ttattGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAgc > 1:6619034/1‑67 (MQ=255) ttattGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAgc > 1:25047077/1‑67 (MQ=255) ttattGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAgc > 1:28129508/1‑67 (MQ=255) ttattGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAgc > 1:33186787/1‑67 (MQ=255) ttattGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAgc > 1:22902253/1‑67 (MQ=255) ttattGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAgc > 1:21918547/1‑67 (MQ=255) ttattGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAgc > 1:9406925/1‑67 (MQ=255) ttattGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAgc > 1:15555829/1‑67 (MQ=255) ttattGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAgc > 1:16021346/1‑67 (MQ=255) tattGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAgcgc < 1:12583916/68‑1 (MQ=255) tattGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAgcg > 1:7490721/1‑67 (MQ=255) tattGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAgcg > 1:22362119/1‑67 (MQ=255) ttGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCa > 1:24371925/1‑68 (MQ=255) ttGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCa > 1:19249372/1‑68 (MQ=255) tGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAg > 1:32690930/1‑68 (MQ=255) tGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAg > 1:11698856/1‑68 (MQ=255) tGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAg > 1:3063672/1‑68 (MQ=255) tGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAg > 1:26713022/1‑68 (MQ=255) tGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAg > 1:20807341/1‑68 (MQ=255) tGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAg > 1:21292037/1‑68 (MQ=255) tGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAg > 1:21576064/1‑68 (MQ=255) tGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTATGCCCACAGCGCCAg > 1:28850552/1‑68 (MQ=255) tGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATAAGAAACTCACTCTGCCCACAGCGCCAg > 1:31855046/1‑68 (MQ=255) gTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGt > 1:24056862/1‑68 (MQ=255) gTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGt < 1:28377720/68‑1 (MQ=255) gTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGt < 1:23215426/68‑1 (MQ=255) ttAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTg < 1:19397169/67‑1 (MQ=255) ttAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTg < 1:14279296/67‑1 (MQ=255) ttAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTg < 1:13230838/67‑1 (MQ=255) aCTGGCGGTTGAATTGTTGTCttcaaccgccagtttaaacaataaatataacggctgattagcgaact > 1:20665535‑M2/1‑21 (MQ=255) aCTGGCGGTTGAATTGTTGTCttcaaccgccagtttaaacaataaatataacggctgattagcgaact > 1:5055518‑M2/1‑21 (MQ=255) aCTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAAc < 1:9772799/68‑1 (MQ=255) aCTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAAc < 1:30320929/68‑1 (MQ=255) aCTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAAc > 1:1797045/1‑68 (MQ=255) cTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACg < 1:4120557/68‑1 (MQ=255) cTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACg < 1:5204251/68‑1 (MQ=255) cTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACg > 1:8896414/1‑68 (MQ=255) cTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACg > 1:26103195/1‑68 (MQ=255) cTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACg > 1:3436992/1‑68 (MQ=255) cTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACg > 1:20857740/1‑68 (MQ=255) cTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACg > 1:24920528/1‑68 (MQ=255) cTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACg > 1:25508142/1‑68 (MQ=255) ggCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGtt < 1:10685848/68‑1 (MQ=255) ttGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTatc > 1:5793490/1‑68 (MQ=255) ttGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTat < 1:33653016/67‑1 (MQ=255) ttGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTat < 1:18587897/67‑1 (MQ=255) ttGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTat < 1:32391631/67‑1 (MQ=255) ttGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTat < 1:24495991/67‑1 (MQ=255) ggaATTGTTGTCttcaaccgccagtttaaacaataaatataacggctgattagcgaactaattttgct > 1:30039881‑M2/2‑12 (MQ=255) gAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTatca > 1:4423975/1‑67 (MQ=255) gAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTatca > 1:8692850/1‑67 (MQ=255) aTTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTatcatca > 1:29207238/1‑68 (MQ=255) aTTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTatcatca > 1:27694261/1‑68 (MQ=255) aTTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTatcatca > 1:27579060/1‑68 (MQ=255) aTTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTatcatca < 1:10162973/68‑1 (MQ=255) aTTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTatcatca > 1:23026323/1‑68 (MQ=255) aTTGTGGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTatcatc < 1:23570923/67‑1 (MQ=255) ttgttgTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTatcatcat < 1:33382285/68‑1 (MQ=255) tgttgtCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTatcatcat > 1:13545575/1‑67 (MQ=255) gttgtCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATcc < 1:33818119/68‑1 (MQ=255) gttgtCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATcc < 1:32048213/68‑1 (MQ=255) tgtCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGt > 1:27141765/1‑68 (MQ=255) tgtCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGt > 1:29733723/1‑68 (MQ=255) | AAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTAC > CP009273/2145106‑2145238 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |