| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 2749471 | 396 (0.950) | 25 (0.070) | 6/90 | NT | 6.8% | intergenic (+734/‑47) | smpB/intA | trans‑translation protein/CP4‑57 prophage; integrase |
| ? | CP009273 | = 2749488 | 364 (1.090) | intergenic (+751/‑30) | smpB/intA | trans‑translation protein/CP4‑57 prophage; integrase | |||||
Only 100 of 713 total aligned reads displayed.
TTTGTCCCGCGAAGTCCGAAGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAACCAAGCCGT > CP009273/2749404‑2749539 | tCCCGCGAAGTCCGAAGAGACCTAATTAAATCCGAACCTTTTAGGCCCATGGATAGGCCCAACGaaaa > 1:27586530/1‑68 (MQ=255) tCCCGCGAAGTCCGAAGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGaaaa > 1:8411335/1‑68 (MQ=255) tCCCGCGAAGTCCGAAGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGaaaa > 1:13197150/1‑68 (MQ=255) tCCCGCGAAGTCCGAAGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGaaaa > 1:29809487/1‑68 (MQ=255) tCCCGCGAAGTCCGAAGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGaaaa > 1:22023711/1‑68 (MQ=255) ccGCGAAGTCCGAAGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGc < 1:34336297/68‑1 (MQ=255) ccGCGAAGTCCGAAGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGc < 1:2011184/68‑1 (MQ=255) ccGCGAAGTCCGAAGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGc < 1:16034139/68‑1 (MQ=255) gAAGTCCGAAGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGctct < 1:9215473/67‑1 (MQ=255) aGTCCGAAGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTAt < 1:11043995/67‑1 (MQ=255) tCCGAAGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGt > 1:33922453/1‑68 (MQ=255) ccGAAGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTg < 1:30559647/66‑1 (MQ=255) ccGAAGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGt < 1:6961568/67‑1 (MQ=255) agagAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTAcg > 1:22988543‑M2/1‑66 (MQ=255) agagAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTAcg > 1:28599588‑M2/1‑66 (MQ=255) agagAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTAc > 1:12768408‑M2/1‑66 (MQ=255) gagaACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGttaacaatagcggttttcgt > 1:29316263‑M1/1‑48 (MQ=255) gagaACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTAcgt < 1:32561338‑M2/68‑4 (MQ=255) acaaaTTAAATCCGACCCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTgg < 1:26957533/64‑1 (MQ=255) aCTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTAtgttggg > 1:104018‑M2/1‑61 (MQ=255) aCTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTAcgttggg > 1:23351549‑M2/1‑61 (MQ=255) aCTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTAcgttggg > 1:34651670‑M2/1‑61 (MQ=255) aCTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTAcgttggg > 1:26046669‑M2/1‑61 (MQ=255) aCTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTAcgttggg > 1:25460065‑M2/1‑61 (MQ=255) aCTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTAcgttggg > 1:6383362‑M2/1‑61 (MQ=255) cTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTAcgttgggc > 1:9673872‑M2/1‑60 (MQ=255) tAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTAcgttgggcc > 1:15579306‑M2/1‑59 (MQ=255) tAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTAcgttgggcc > 1:33572587‑M2/1‑59 (MQ=255) ttAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTaa > 1:34855077/1‑68 (MQ=255) ttAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTaa > 1:10745142/1‑68 (MQ=255) ttAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTaa > 1:2112584/1‑68 (MQ=255) aaTCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACg < 1:14251999/68‑1 (MQ=255) aaTCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACg < 1:12261863/68‑1 (MQ=255) tCCGAACCTTTTAGGCCCATTGATAGGCCCAACGtaaacaatagagcttttcgttggggctatcaatg > 1:2265102‑M1/1‑34 (MQ=255) tCCGAACCTTTTAGGCCCATTGATAGGCCCAACGtaaacaatagagcttttcgttgggcctatcaatg > 1:6083780‑M1/1‑34 (MQ=255) tCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCa > 1:15824148/1‑68 (MQ=255) tCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCa < 1:453967/68‑1 (MQ=255) tCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCa > 1:7787118/1‑68 (MQ=255) tCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCa < 1:8634873/68‑1 (MQ=255) cGAACCATTTAGGCCCATTGATAGCCCCAACCAAAAGCTCTATTGTTTAcgttgggcctatcaatggg > 1:29657333‑M2/1‑49 (MQ=255) aCCTTTTAGGCCCATTTATAGGCCCAACGAAAAGCGCTATTGTTTAcgttgggcctatcaatgggcc > 1:14746038‑M2/1‑46 (MQ=255) ccTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGgaga < 1:24360708/68‑1 (MQ=255) ccTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGgaga < 1:4149027/68‑1 (MQ=255) tttAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTc < 1:20591363/68‑1 (MQ=255) tttAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTc < 1:19008162/68‑1 (MQ=255) ttAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTcc < 1:10116282/68‑1 (MQ=255) ttAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTcc < 1:20935353/68‑1 (MQ=255) ggCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCa > 1:4875993/1‑68 (MQ=255) ggCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCa > 1:14056299/1‑68 (MQ=255) ggCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACACCCCa > 1:18732286/1‑68 (MQ=255) gCCCATTGATAGGCCCAACGtaaacaatagcgcttttcgttgggccgatcaatgggccgaaaaggttc > 1:7236808‑M1/1‑20 (MQ=255) gCCCATTGATAGGCCCAACGtaaacaatagagcttttcgttgggcctatcaatgggcctaaaaggttc > 1:8088840‑M1/1‑20 (MQ=255) gCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCAt > 1:17070206/1‑68 (MQ=255) gCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCAt > 1:32851283/1‑68 (MQ=255) gCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCAt > 1:15079922/1‑68 (MQ=255) gCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCAt > 1:32005949/1‑68 (MQ=255) gCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCAt > 1:31208352/1‑68 (MQ=255) ccATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATg < 1:11650897/67‑1 (MQ=255) ccATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATg < 1:19347042/67‑1 (MQ=255) ccATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATg < 1:27284917/67‑1 (MQ=255) tGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAg < 1:25730871/68‑1 (MQ=255) tGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAg > 1:29972023/1‑68 (MQ=255) gtttAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAg > 1:21366654/4‑68 (MQ=255) gATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGa > 1:26461140/1‑68 (MQ=255) aGGCCCAACGtaaacaatagagcttttcgttgggcctatcaatgggcctaaaaggttcggatttaatt > 1:18544998‑M1/1‑10 (MQ=255) ggCCCAACGtaaacaatagagcttttcgttgggcctatcaatgggcctaaaaggttcggatttaatta > 1:3772337‑M1/1‑9 (MQ=255) ggCCCAACGtaaacaatagagcttttcgttgggcctatcaatgggcctaaaaggttcggatttaatta > 1:5652205‑M1/1‑9 (MQ=255) ggCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCAATGGCAAGaaaa > 1:28376327/1‑67 (MQ=255) gCCCAACGtaaacaatagagcttttcgttgggcctatcaatgggcctaaaaggttcggatttaattag > 1:26263447‑M1/1‑8 (MQ=255) gCCCAACGtaaacaatagagcttttcgttgggcctatcaatgggcctaaaaggttcggatttaattag > 1:19816436‑M1/1‑8 (MQ=255) gCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAACCGCAGGGAGACTCCCCATGGCAAGaaaaa > 1:8990109/1‑67 (MQ=255) gCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGaaaaa > 1:28037603/1‑67 (MQ=255) gCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGaaaaa > 1:26356085/1‑67 (MQ=255) gCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGaaaaa > 1:13460263/1‑67 (MQ=255) gCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGaaaaa > 1:1731010/1‑67 (MQ=255) gCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGaaaaa > 1:29448121/1‑67 (MQ=255) cccAACGtaaacaatagagcttttcgttgggcctatcaatgggcctaaaaggttcggatttaattagt > 1:11806441‑M1/1‑7 (MQ=255) cccAACGtaaacaatagagcttttcgttgggcctatcaaggggcctaaaaggttcggatttaattagt > 1:23902325‑M1/1‑7 (MQ=255) ccAACGtaaacaatagagcttttcgttgggcctatcaatgggcctaaaaggttcggatttaattagt > 1:21627234‑M1/1‑6 (MQ=255) ccAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAACCa > 1:33262214/1‑68 (MQ=255) ccAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAACCa > 1:17729776/1‑68 (MQ=255) ccAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAACCa > 1:31664636/1‑68 (MQ=255) ccAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAACCa > 1:24640188/1‑68 (MQ=255) aCGtaaacaatagagcttttcgttgggcctatcaatgggcctaaaaggttcggatttaattagttctc < 1:24996966‑M1/68‑66 (MQ=255) aCGtaaacaatagagcttttcgttgggcctatcaatgggcctaaaaggttcggatttaattagttctc < 1:18234115‑M1/68‑66 (MQ=255) aCGAAAAGCTGTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAACCAAGc < 1:25174760/68‑1 (MQ=255) aCGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAACCAAGc < 1:26751443/68‑1 (MQ=255) aCGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAACCAAGc < 1:16273730/68‑1 (MQ=255) aCGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAACCAAGc < 1:7544896/68‑1 (MQ=255) aCGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAACCAAGc < 1:24082135/68‑1 (MQ=255) aCGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGAATCCCCATGGCAAGAAAAACCAAGc < 1:4991233/68‑1 (MQ=255) cGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAACCAAGcc > 1:3241666/1‑68 (MQ=255) cGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAACCAAGcc < 1:6645127/68‑1 (MQ=255) cGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAACCAAGcc < 1:3033390/68‑1 (MQ=255) gtaaacaatagagcttttcgttgggcctatcaatgggcctaaaaggttcggatttaattagttctct > 1:10027522‑M1/1‑1 (MQ=255) gAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAACCAAGCCg > 1:12466089/1‑68 (MQ=255) gAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAACCAAGCCg > 1:28870470/1‑68 (MQ=255) gAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAACCAAGCCg > 1:5315969/1‑68 (MQ=255) gAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAACCAAGCCg > 1:16662476/1‑68 (MQ=255) gAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCAT‑GCAAGAAAAACCAAGCCGt < 1:4676929/68‑1 (MQ=255) | TTTGTCCCGCGAAGTCCGAAGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAACCAAGCCGT > CP009273/2749404‑2749539 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |