| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 2749471 | 396 (0.950) | 25 (0.070) | 6/90 | NT | 6.8% | intergenic (+734/‑47) | smpB/intA | trans‑translation protein/CP4‑57 prophage; integrase |
| ? | CP009273 | = 2749488 | 364 (1.090) | intergenic (+751/‑30) | smpB/intA | trans‑translation protein/CP4‑57 prophage; integrase | |||||
Only 100 of 555 total aligned reads displayed.
AGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAAT > CP009273/2749423‑2749555 | agagAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTAc > 1:26178888‑M2/1‑66 (MQ=255)agagAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTAc > 1:10027522‑M2/1‑66 (MQ=255) gagaACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTAcgt < 1:27384585‑M2/68‑4 (MQ=255) gagaACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTAcgt < 1:12984592‑M2/68‑4 (MQ=255) gagaACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTAcgt < 1:18234115‑M2/68‑4 (MQ=255) aCTAATTAAATGCGAACCTTTTATGCCCATTTATAGGCCCAACGAAAAGCTCTATTGTTTAcgttgg > 1:29390346‑M2/1‑61 (MQ=255) aCTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTAcgttggg > 1:6383362‑M2/1‑61 (MQ=255) aCTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTAcgttggg > 1:34651670‑M2/1‑61 (MQ=255) aCTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTAcgttggg > 1:11806441‑M2/1‑61 (MQ=255) aCTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTAcgttggg > 1:25518646‑M2/1‑61 (MQ=255) aCTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTAcgttgg > 1:6665863‑M2/1‑61 (MQ=255) cTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTAcgttgggc > 1:23115789‑M2/1‑60 (MQ=255) tAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTAcgttgggcc > 1:9689770‑M2/1‑59 (MQ=255) tAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTAcgttgggcc > 1:15579306‑M2/1‑59 (MQ=255) ttAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTAcgttgggcctat > 1:25913996‑M2/1‑56 (MQ=255) ttAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTaa > 1:34855077/1‑68 (MQ=255) ttAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTaa > 1:10745142/1‑68 (MQ=255) ttAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTaa > 1:23897999/1‑68 (MQ=255) aaTCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACg < 1:29100014/68‑1 (MQ=255) aaTCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACg < 1:3762828/68‑1 (MQ=255) aaTCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACg < 1:13373673/68‑1 (MQ=255) tCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCa > 1:22002528/1‑68 (MQ=255) tCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCa > 1:2832742/1‑68 (MQ=255) tCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCa > 1:16946026/1‑68 (MQ=255) tCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCa > 1:17588326/1‑68 (MQ=255) tCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCa < 1:500383/68‑1 (MQ=255) tCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCa > 1:24138411/1‑68 (MQ=255) tCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCa > 1:19584966/1‑68 (MQ=255) cGAACCTTTTCGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTAcgttgggcctatcaatggg > 1:19291257‑M2/1‑49 (MQ=255) cGAACCATTTAGGCCCATTGATAGCCCCAACCAAAAGCTCTATTGTTTAcgttgggcctatcaatggg > 1:29657333‑M2/1‑49 (MQ=255) gAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTAcgttgggcctatcaatgggc > 1:8088840‑M2/1‑48 (MQ=255) aCCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGgag > 1:25058982/1‑68 (MQ=255) aCCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGgag > 1:7711990/1‑68 (MQ=255) aCCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGATTAcgttgggcctatcaatgggcc > 1:18968697‑M2/1‑46 (MQ=255) ccTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGgaga < 1:33885122/68‑1 (MQ=255) ttAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTcc < 1:5488774/68‑1 (MQ=255) ttAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTcc < 1:17970005/68‑1 (MQ=255) ggCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCa > 1:22439252/1‑68 (MQ=255) ggCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCa > 1:11631196/1‑68 (MQ=255) ggCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCa > 1:14056299/1‑68 (MQ=255) ggCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCa > 1:15176735/1‑68 (MQ=255) ggCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCa > 1:20716544/1‑68 (MQ=255) ggCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCa > 1:32920052/1‑68 (MQ=255) ggCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCa > 1:10435465/1‑68 (MQ=255) gCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCAt > 1:29766167/1‑68 (MQ=255) gCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCAt > 1:28828600/1‑68 (MQ=255) gCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCAt > 1:28562999/1‑68 (MQ=255) gCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCAt > 1:32005949/1‑68 (MQ=255) cccATTGATAGGCCCAACGATAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGAGTCCCCATg > 1:4878033/1‑68 (MQ=255) cccATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATg > 1:18566150/1‑68 (MQ=255) cccATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATg > 1:4487572/1‑68 (MQ=255) cccATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATg > 1:7114931/1‑68 (MQ=255) cccATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATg > 1:21088896/1‑68 (MQ=255) tGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAg > 1:29972023/1‑68 (MQ=255) tGATAGGCCCAACGAAAAGCTCTATTGTTTACGGTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAg > 1:3110899/1‑68 (MQ=255) gATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGa > 1:26461140/1‑68 (MQ=255) aTAGGCCCAACGAAAAGCTCTATTGTTTAcgttgggcctatcaatgggcctaaaaggttcggatttaa > 1:3345721‑M2/1‑29 (MQ=255) aTAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCCTGGCAAGaa > 1:7532704/1‑68 (MQ=255) aTAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGaa > 1:24066621/1‑68 (MQ=255) aTAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGaa > 1:28001204/1‑68 (MQ=255) aTAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGaa > 1:25195201/1‑68 (MQ=255) tAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGaaa > 1:22778595/1‑68 (MQ=255) ggCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGaaaa > 1:19924524/1‑67 (MQ=255) gCCCAACGAAAAGCTGTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGaaaaa > 1:4713774/1‑67 (MQ=255) gCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGaaaac > 1:24854728/1‑66 (MQ=255) gCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGaaaaa > 1:13700543/1‑67 (MQ=255) gCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGaaaaa > 1:4045357/1‑67 (MQ=255) gCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGaaaaa > 1:5159815/1‑67 (MQ=255) gCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGaaaaa > 1:26356085/1‑67 (MQ=255) gCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGaaaaa > 1:24394119/1‑67 (MQ=255) gCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGaaaaa > 1:21256729/1‑67 (MQ=255) gCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGaaaaa > 1:9063024/1‑67 (MQ=255) gCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGaaaaa > 1:10253859/1‑67 (MQ=255) ccAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAACCa > 1:8947201/1‑68 (MQ=255) aCGAAAATCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGAATCCCCATGGCAAGAAAAACCAAGc < 1:12759246/68‑1 (MQ=255) aCGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAACCAAGc < 1:26751443/68‑1 (MQ=255) aCGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAACCAAGc < 1:3150389/68‑1 (MQ=255) aCGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAACCAAGc < 1:21603642/68‑1 (MQ=255) aCGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAACCAAGc < 1:17203351/68‑1 (MQ=255) aCGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAACCAAGc < 1:16273730/68‑1 (MQ=255) aCGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAACCAAGc < 1:15852494/68‑1 (MQ=255) cGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAACCAAGcc < 1:3033390/68‑1 (MQ=255) cGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAACCAAGcc > 1:3241666/1‑68 (MQ=255) gAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAACCAAGCCg > 1:12398356/1‑68 (MQ=255) gAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAACCAAGCCg > 1:30637411/1‑68 (MQ=255) gAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAACCAAGCCg > 1:27111947/1‑68 (MQ=255) gAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAACCAAGCCg > 1:16662476/1‑68 (MQ=255) gAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAACCAAGCCg > 1:15955651/1‑68 (MQ=255) gAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAACCAAGCCg > 1:14798100/1‑68 (MQ=255) aaaGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAACCAAGCCGt < 1:5824031/67‑1 (MQ=255) aaaGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAACCAAGCCGt < 1:24547921/67‑1 (MQ=255) aGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAACCAAGCCGTTaa < 1:11416620/68‑1 (MQ=255) gCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAACCAAGCCGTTa > 1:34136628/1‑66 (MQ=255) gCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAACCAAGCCGTTa > 1:27239223/1‑66 (MQ=255) tctATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAACCAAGCCGTTAACt < 1:31823728/67‑1 (MQ=255) ctATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGa < 1:20319408/68‑1 (MQ=255) aTTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGAt > 1:8530368/1‑67 (MQ=255) tGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACg > 1:14414257/1‑68 (MQ=255) ttACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGaa > 1:2358/1‑68 (MQ=255) aCGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGaaa > 1:32522629/1‑67 (MQ=255) | AGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAAT > CP009273/2749423‑2749555 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |