| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 3614762 = | NA (NA) | 3 (0.010) | 3/100 | NT | 100% | coding (2211/4236 nt) | rhsB | Rhs family putative polymorphic toxin, putative neighboring cell growth inhibitor |
| ? | CP009273 | 3614767 = | 0 (0.000) | coding (2216/4236 nt) | rhsB | Rhs family putative polymorphic toxin, putative neighboring cell growth inhibitor | |||||
CAGAGCGGTGGCAGTATGACGAACGTGGCTGGCTGACAGACATCAGCCATATCAGCGAAGGGCACCGGGTGGCGGTGCATTACAGGTATGATGAGAAAGGCCGGCTGACCGGTGA > CP009273/3614695‑3614809 | gcacccccccccggtgcccttcgctgatagggctgatgtctgTCAGCCATATCAGCGAAGGGCACCgg < 1:33922915‑M2/26‑1 (MQ=255) acccccacccggtgcccttcgctgatatggctgatgcctgTCCGCCATATCAGCGAAGGGCACCGGGt < 1:15171064‑M2/28‑1 (MQ=255) tcgctgatatggctgatgtctgTCAGCCATATCAGCGAAGGGCACCGGGTGGCGGTGCATTACAGGTa > 1:21161127‑M2/23‑68 (MQ=255) tatggctgctgtctgTCAGCCATATCAGCGAAGGGCACAGGGTGGCGGTGCATTACAGGTATGATgag > 1:25157977‑M2/16‑68 (MQ=255) TCAGCCATATCAGCGCAGGGCACCGGGTGGCGGTGCATTACAGGTATGATGAGAAAGGCCGGCTGAcc < 1:34122091‑M2/68‑1 (MQ=255) TCAGCCATATCAGCGAAGGGCACCGGGTGGCGGTGCATTACAGGTATGATGAGAAAGGCCGGCTGAcc > 1:27867475‑M2/1‑68 (MQ=255) TCAGCCATATCAGCGAAGGGCACCGGGTGGCGGTGCATTACAGGTATGATGAGAAAGGCCGGCTGAcc > 1:20447766‑M2/1‑68 (MQ=255) TCAGCCATATCAGCGAAGGGCACCGGGTGGCGGTGCATTACAGGTATGATGAGAAAGGCCGGCTGAcc < 1:5831624‑M2/68‑1 (MQ=255) TCAGCCATATCAGCGAAGGGCACCGGGTGGCGGTGCATTACAGGTATGATGAGAAAGGCCGGCTGAcc > 1:6085320‑M2/1‑68 (MQ=255) TCAGCCATATCAGCGAAGGGCACCGGGTGGCGGTGCATTACAGGTATGATGAGAAAGGCCGGCTGAcc > 1:33517229‑M2/1‑68 (MQ=255) TCAGCCATATCAGCGAAGGGCACCGGGTGGCGGTGCATTACAGGTATGATGAGAAAGGCCGGCTGAcc > 1:14425020‑M2/1‑68 (MQ=255) TCAGCCATATCAGCGAAGGGCACCGGGTGGCGGTGCATTACAGGTATGATGAGAAAGGCCGGCTGAcc < 1:13866009‑M2/68‑1 (MQ=255) TCAGCCATATCAGCGAAGGGCACCGGGTGGCGGTGCATTACAGGTATGATGAGAAAGGCCGGCTGAcc > 1:2938281‑M2/1‑68 (MQ=255) TCAGCCATATCAGCGAAGGGCACCGGGTGGCGGTGCATTACAGGTATGATGAGAAAGGCCGGCTGAcc > 1:2538447‑M2/1‑68 (MQ=255) TCAGCCATATCAGCGAAGCGCACCGGGTGGCGGTGCATTACAGGTATGATGAGAAAGGCCGGCTGAcc < 1:8980697‑M2/68‑1 (MQ=255) CAGCCATATCAGCGAAGGGCACCGGGTGGCGGTGCATTACAGGTATGATGAGAAAGGCCGGCTGACCg > 1:6964202‑M2/1‑68 (MQ=255) CAGCCATATCAGCGAAGGGCACCGGGTGGCGGTGCATTACAGGTATGATGAGAAAGGCCGGCTGACCg > 1:25310378‑M2/1‑68 (MQ=255) CAGCCATATCAGCGAAGGGCACCGGGTGGCGGTGCATTACAGGTATGATGAGAAAGGCCGGCTGACCg < 1:4554891‑M2/68‑1 (MQ=255) GCCATATCAGCGAAGGGCACCGGGTGGCGGTGCATTACAGGTatgat > 1:7595817‑M2/1‑47 (MQ=255) GCCATATCAGCGAAGGGCACCGGGTGGCGGTGCATTACAGGTATGATGAGAACGGCCGGCTGACCGGt > 1:9557772‑M2/1‑68 (MQ=255) GCCATATCAGCGAAGGGCACCGGGTGGCGGTGCATTACAGGTATGATGAGAAAGGCCGGCTGAGCGGt > 1:27163204‑M2/1‑68 (MQ=255) GCCATATCAGCGAAGGGCACCGGGTGGCGGTGCATTACAGGTATGATGAGAAAGGCCGGCTGACCGGt > 1:1584889‑M2/1‑68 (MQ=255) GCCATATCAGCGAAGGGCACCGGGTGGCGGTGCATTACAGGTATGATGAGAAAGGCCGGCTGACCGGt > 1:2555042‑M2/1‑68 (MQ=255) GCCATATCAGCGAAGGGCACCGGGTGGCGGTGCATTACAGGTATGATGAGAAAGGCCGGCTGACCGGt > 1:28819304‑M2/1‑68 (MQ=255) GCCATATCAGCGAAGGGCACCGGGTGGCGGTGCATTACAGGTATGATGAGAAAGGCCGGCTGACCGGt > 1:9027210‑M2/1‑68 (MQ=255) GCCATATCAGCGAAGGGCACCGGGTGGCGGTGCATTACAGGTATGATGAGAAAGGCCGGCTGACCGGt > 1:12568498‑M2/1‑68 (MQ=255) GCCATATCAGCGAAGGGCACCGGGTGGCGGTGCATTACAGGTATGATGAGAAAGGCCGGCTGACCGGt > 1:12571936‑M2/1‑68 (MQ=255) GCCATATCAGCGAAGGGCACCGGGTGGCGGTGCATTACAGGTATGATGAGAAAGGCCGGCTGACCGGt > 1:28899456‑M2/1‑68 (MQ=255) GCCATATCAGCGAAGGGCACCGGGTGGCGGTGCATTACAGGTATGATGAGAAAGGCCGGCTGACCGGt > 1:25012918‑M2/1‑68 (MQ=255) GCCATATCAGCGAAGGGCACCGGGTGGCGGTGCATTACAGGTATGATGAGAAAGGCCGGCTGACCGGt > 1:8606236‑M2/1‑68 (MQ=255) GCCATATCAGCGAAGGGCACCGGGTGGCGGTGCATTACAGGTATGATGAGAAAGGCCGGCTGACCGGt > 1:10063590‑M2/1‑68 (MQ=255) GCCATATCAGCGAAGGGCACCGGGTGGCGGTGCATTACAGGTATGATGAGAAAGGCCGGCTGACCGGt > 1:27653953‑M2/1‑68 (MQ=255) GCCATATCAGCGAAGGGCACCGGGTGGCGGTGCATTACAGGTATGATGAGAAAGGCCGGCTGACCGGt > 1:27465394‑M2/1‑68 (MQ=255) GCCATATCAGCGAAGGGCACCGGGTGGCGGTGCATTACAGGTATGATGAGAAAGGCCGGCTGACCGGt > 1:5408447‑M2/1‑68 (MQ=255) GCCATATCAGCGAAGGGCACCGGGTGGCGGTGCATTACAGGTATGATGAGAAAGGCCGGCTGACCGGt > 1:16455067‑M2/1‑68 (MQ=255) GCCATATCAGCGAAGGGCACCGGGTGGCGGTGCATTACAGGTATGATGAGAAAGGCCGGCTGACCGGt > 1:33953368‑M2/1‑68 (MQ=255) GCCATATCAGCGAAGGGCACCGGGTGGCGGTGCATTACAGGTATGATGAGAAAGGCCGGCTGACCGGt > 1:18404494‑M2/1‑68 (MQ=255) GCCATATCAGCGAAGGGCACCGGGTGGCGGTGCATTACAGGTATGATGAGAAAGGCCGGCTGACCGGt > 1:34546747‑M2/1‑68 (MQ=255) GCCATATCAGCGAAGGGCACCGGGTGGCGGTGCATTACAGGTATGATGAGAAAGGCCGGCTGACCGGt > 1:3498434‑M2/1‑68 (MQ=255) GCCATATCAGCGAAGGGCACCGGGTGGCGGTGCATTACAGGTATGATGAGAAAGGCCGGCTGACCGGt > 1:3797620‑M2/1‑68 (MQ=255) GCCATATCAGCGAAGGGCACCGGGTGGCGGTGCATTACAGGTATGATGAGAAAGGCCGGCTGACCGGt > 1:18520587‑M2/1‑68 (MQ=255) GCCATATCAGCGAAGGGCACCGGGTGGCGGTGCATTACAGGTATGATGAGAAAGGCCGGCTGACCGGt > 1:18581042‑M2/1‑68 (MQ=255) GCCATATCAGCGAAGGGCACCGGGTGGCGGTGCATTACAGGTATGATGAGAAAGGCCGGCTGACCGGt > 1:3955022‑M2/1‑68 (MQ=255) GCCATATCAGCGAAGGGCACCGGGTGGCGGTGCATTACAGGTATGATGAGAAAGGCCGGCTGACCGGt > 1:18690620‑M2/1‑68 (MQ=255) GCCATATCAGCGAAGGGCACCGGGTGGCGGTGCATTACAGGTATGATGAGAAAGGCCGCCTGACCGGt > 1:413830‑M2/1‑68 (MQ=255) CCATATCAGCGAAGGGCACCGGGTGGCGGTGCATTACAGGTATGATGAGAACGGCCGGCTGACCGGTg > 1:21611668‑M2/1‑68 (MQ=255) CCATATCAGCGAAGGGCACCGGGTGGCGGTGCATTACAGGTATGATGAGAAAGGCCGGCTGACCGGTg > 1:10527041‑M2/1‑68 (MQ=255) CCATATCAGCGAAGGGCACCGGGTGGCGGTGCATTACAGGTATGATGAGAAAGGCCGGCTGACCGGTg > 1:30216280‑M2/1‑68 (MQ=255) CCATATCAGCGAAGGGCACCGGGTGGCGGTGCATTACAGGTATGATGAGAAAGGCCGGCTGACCGGTg > 1:30321575‑M2/1‑68 (MQ=255) CCATATCAGCGAAGGGCACCGGGTGGCGGTGCATTACAGGTATGATGAGAAAGGCCGGCTGACCGGTg > 1:30798341‑M2/1‑68 (MQ=255) CCATATCAGCGAAGGGCACCGGGTGGCGGTGCATTACAGGTATGATGAGAAAGGCCGGCTGACCGGTg > 1:31245244‑M2/1‑68 (MQ=255) CCATATCAGCGAAGGGCACCGGGTGGCGGTGCATTACAGGTATGATGAGAAAGGCCGGCTGACCGGTg > 1:26613662‑M2/1‑68 (MQ=255) CCATATCAGCGAAGGGCACCGGGTGGCGGTGCATTACAGGTATGATGAGAAAGGCCGGCTGACCGGTg > 1:22891532‑M2/1‑68 (MQ=255) CCATATCAGCGAAGGGCACCGGGTGGCGGTGCATTACAGGTATGATGAGAAAGGCCGGCTGACCGGTg > 1:22244287‑M2/1‑68 (MQ=255) CCATATCAGCGAAGGGCACCGGGTGGCGGTGCATTACAGGTATGATGAGAAAGGCCGGCTGACCGGTg > 1:19912585‑M2/1‑68 (MQ=255) CCATATCAGCGAAGGGCACCGGGTGGCGGTGCATTACAGGTATGATGAGAAAGGCCGGCTGACCGGTg > 1:19167046‑M2/1‑68 (MQ=255) CCATATCAGCGAAGGGCACCGGGTGGCGGTGCATTACAGGTATGATGAGAAAGGCCGGCTGACCGGTg > 1:23695159‑M2/1‑68 (MQ=255) CCATATCAGCG‑AGGGCACCGGGTGGCGGTGCAGAACAGGTATGATGAGAAAGGCCGGCTGACCGGTGa > 1:25128412‑M2/1‑68 (MQ=255) CATATCAGCGAAGGGCACCGTGTGGCGGTGCATTACAGTTATGATTAGAAAGGCCGGCTGACCgg < 1:33598403‑M2/65‑1 (MQ=255) CATATCAGCGAAGGGCACCGGGTGGCGGTGCATTACAGGTATGATGCGAAAGGCCGGCTGACCGGt < 1:28759200‑M2/66‑1 (MQ=255) CATATCAGCGAAGGGCACCGGGTGGCGGTGCATTACAGGTATGATGAGAAAGGCCGGCTGACCgg < 1:17866022‑M2/65‑1 (MQ=255) CATATCAGCGAAGGGCACCGGGTGGCGGTGCATTACAGGTATGATGAGAAAGGCCGGCTGACCGGt < 1:5800795‑M2/66‑1 (MQ=255) CATATCAGCGAAGGGCACCGGGTGGCGGTGCATTACAGGTATGATGAGAAAGGCCGGCTGACCGGt < 1:5755316‑M2/66‑1 (MQ=255) CATATCAGCGAAGGGCACCGGGTGGCGGTGCATTACAGGTATGATGAGAAAGGCCGGCTGACCGGt < 1:4632608‑M2/66‑1 (MQ=255) CATATCAGCGAAGGGCACCGGGTGGCGGTGCATTACAGGTATGATGAGAAAGGCCGGCTGACCGGt < 1:19340422‑M2/66‑1 (MQ=255) CATATCAGCGAAGGGCACCGGGTGGCGGTGCATTACAGGTATGATGAGAAAGGCCGGCTGACCGGt < 1:1418082‑M2/66‑1 (MQ=255) CATATCAGCGAAGGGCACCGGGTGGCGGTGCATTACAGGTATGATGAGAAAGGCCGGCTGACCGGt < 1:21213215‑M2/66‑1 (MQ=255) CATATCAGCGAAGGGCACCGGGTGGCGGTGCATTACAGGTATGATGAGAAAGGCCGGCTGACCGGt < 1:21500353‑M2/66‑1 (MQ=255) CATATCAGCGAAGGGCACCGGGTGGCGGTGCATTACAGGTATGATGAGAAAGGCCGGCTGACCGGt < 1:11267912‑M2/66‑1 (MQ=255) CATATCAGCGAAGGGCACCGGGTGGCGGTGCATTACAGGTATGATGAGAAAGGCCGGCTGACCGGt < 1:10575417‑M2/66‑1 (MQ=255) CATATCAGCGAAGGGCACCGGGTGGCGGTGCATTACAGGTATGATGAGAAAGGCCGGCTGACCGGt < 1:31222517‑M2/66‑1 (MQ=255) CATATCAGCGAAGGGCACCGGGTGGCGGTGCATTACAGGTATGATGAGAAAGGCCGGCTGACCGGt < 1:27983865‑M2/66‑1 (MQ=255) CATATCAGCGAAGGGCACCGGGTGGCGGTGCATTACAGGTATGATGAGAAAGGCCGGCTGACCGGt < 1:23357476‑M2/66‑1 (MQ=255) CATATCAGCGAAGGGCACCGGGTGGCGGTGCATTACAGGTATGATGAGAAAGGCCGGCTGACCGGt < 1:29741790‑M2/66‑1 (MQ=255) CATATCAGCGAAGGGCACCGGGTGGCGGTGCATTACAGGTATGATGAGAAAGGCCGGCTGACCGGTGa > 1:26712018‑M2/1‑68 (MQ=255) CATATCAGCGAAGGGCACCGGGTGGCGGTGCATTACAGGTATGATGAGAAAGGCCGGCTGACCGGTGa > 1:23147648‑M2/1‑68 (MQ=255) CATATCAGCGAAGGGCACCGGGTGGCGGTGCATTACAGGTATGATGAGAAAGGCCGGCTGACCGGTGa < 1:12691842‑M2/68‑1 (MQ=255) CATATCAGCGAAGGGCACCGGGTGGCGGTGCATTACAGGTATGATGAGAAAGGCCGGCTGACCGGTGa > 1:13546255‑M2/1‑68 (MQ=255) CATATCAGCGAAGGGCACCGGGTGGCGGTGCATTACAGGTATGATGAGAAAGGCCGGCTGACCGGTGa < 1:27903972‑M2/68‑1 (MQ=255) CATATCAGCGAAGGGCACCGGGTGGCGGTGCATTACAGGTATGATGAGAAAGGCCGGCTGACCGGTGa > 1:711005‑M2/1‑68 (MQ=255) CATATCAGCGAAGGGCACCGGGTGGCGGTGCATTACAGGTATGATGAGAAAGGCCGGCTGACCGGTGa > 1:16220912‑M2/1‑68 (MQ=255) CATATCAGCGAAGGGCACCGGGTGGCGGTGCATTACAGGTATGATGAGAAAGGCCGGCTGACCGGTGa > 1:6280650‑M2/1‑68 (MQ=255) CATATCAGCGAAGGGCACCGGGTGGCGGTGCATTACAGGTATGATGAGAAAGGCCGGCTGACCGGTGa > 1:6061065‑M2/1‑68 (MQ=255) CATATCAGCGAAGGGCACCGGGTGGCGGTGCATTACAGGTATGATGAGAAAGGCCGGCTGACCGGTGa > 1:28801751‑M2/1‑68 (MQ=255) CATATCAGCGAAGGGCACCGGGTGGCGGTGCATTACAGGTATGATGAGAAAGGCCGGCTGACCGGTGa > 1:25393952‑M2/1‑68 (MQ=255) CATATCAGCGAAGGGCACCGGGTGGCGGTGCATTACAGGTATGATGAGAAAGGCCGGCTGACCGGTGa > 1:4694389‑M2/1‑68 (MQ=255) CATATCAGCGAAGGGCACCGGGTGGCGGTGCATTACAGGTATGATGAGAAAGGCCGGCTGACCGGTGa > 1:30096231‑M2/1‑68 (MQ=255) CATATCAGCGAAGGGCACCGGGTGGCGGTGCATTACAGGTATGATGAGAAAGGCCGGCTGACCGGTGa > 1:19900817‑M2/1‑68 (MQ=255) CATATCAGCGAAGGGCACCGGGTGGCGGTGCATTACAGGTATGATGAGAAAGGCCGGCTGACCGGTGa > 1:4027128‑M2/1‑68 (MQ=255) CATATCAGCGAAGGGCACCGGGTGGCGGTGCATTACAGGTATGATGAGAAAGGCCGGCTGACCGGTGa > 1:23347402‑M2/1‑68 (MQ=255) CATATCAGCGAAGGGCACCGGGTGGCGGTGCATTACAGGTATGATGAGAAAGGCCGGCTGACCGGTGa > 1:23186084‑M2/1‑68 (MQ=255) CATATCAGCGAAGGGCACCGGGTGGCGGTGCATTACAGGTATGATGAGAAAGGCCGGCTGACCGGTGa > 1:22010618‑M2/1‑68 (MQ=255) CATATCAGCGAAGGGCACCGGGTGGCGGTGCATTACAGGTATGATGAGAAAGGCCGGCTGACCGGTGa > 1:22220636‑M2/1‑68 (MQ=255) CATATCAGCGAAGGGCACCGGGTGGCGGTGCATTACAGGTATGATGAGAAAGGCCGGCTGACCGGTGa > 1:23153663‑M2/1‑68 (MQ=255) CATATCAGCGAAGGGCACCGGGTGGCGGTGCATTACAGGTATGATGAGAAAGGCCGGCTGACCGGTGa > 1:3146880‑M2/1‑68 (MQ=255) CATATCAGCGAAGGGCACCGGGTGGCGGTGCATTACAGGTATGATGAGAAAGGCCGGCTGACCGGTGa > 1:32874422‑M2/1‑68 (MQ=255) CATATCAGCGAAGGGCACCGGGTGGCGGTGCATTACAGATATGATGAGAAAGGCCGGCTGACCGGTGa > 1:6230520‑M2/1‑68 (MQ=255) CATATCAGCGAAGGGCACCGGGGGGCGGTGCATTACAGGTATGATGAGAAAGGCCGGCGGACCGGt < 1:17876011‑M2/66‑1 (MQ=255) CATATCAGCGAAGGCCACCGGGTGGCGGTGCATTACAGGTATGATGAGAAAGGCCGGCTGACCgg < 1:25562028‑M2/65‑1 (MQ=255) | CAGAGCGGTGGCAGTATGACGAACGTGGCTGGCTGACAGACATCAGCCATATCAGCGAAGGGCACCGGGTGGCGGTGCATTACAGGTATGATGAGAAAGGCCGGCTGACCGGTGA > CP009273/3614695‑3614809 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |