| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 3054026 | NA (NA) | 4 (0.010) | 3/96 | NT | NA | noncoding (8/21 nt) | REP212 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP212 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | = 3054031 | NA (NA) | noncoding (13/21 nt) | REP212 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP212 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
Only 100 of 560 total aligned reads displayed.
GCGTTACTCGATTATGGTCACAAAGTCCTTCGTCAGGATTAATCCATCAAATAATGCCTGATAGCACATATCAGGCGTTGTCCTCACTTCTTTTTGTATTCCTTGAATCACATCACAAAATAGACAAATCTCAG > CP009273/3053964‑3054097 | gCGTTACTCGATTATGGTCACAAAGTCCTTCGTCAGGATTAATCCATCAAATAATGCCTGATAGcaca < 1:26827635/68‑1 (MQ=255)gCGTTACTCGATTATGGTCACAAAGTCCTTCGTCAGGATTAATCCATCAAATAATGCCTGATAGcaca < 1:21405183/68‑1 (MQ=255)gCGTTACTCGATTATGGTCACAAAGTCCTTCGTCAGGATTAATCCATCAAATAATGCCTGATAGcaca < 1:29355671/68‑1 (MQ=255) cGTTACTCGATTATGGTCACAAAGTCCTTCGTCAGGATTAATCCATCAAATAATGCCTGATAGCACAt < 1:34407197‑M2/68‑2 (MQ=255) gTTACTCGATTATGGTCACAAAGTCCTTCGTCAGGATTAATCCATCAAATAATGCCTGATAGCACAta > 1:22634601‑M2/1‑66 (MQ=255) gTTACTCGATTATGGTCACAAAGTCCTTCGTCAGGATTAATCCATCAAATAATGCCTGATAGCACAta > 1:4376653‑M2/1‑66 (MQ=255) gTTACTCGATTATGGTCACAAAGTCCTTCGTCAGGATTAATCCATCAAATAATGCCTGATAGCACAta > 1:10003101‑M2/1‑66 (MQ=255) gTTACTCGATTATGGTCACAAAGTCCTTCGTCAGGATTAATCCATCAAATAATGCCTGATAGCACAta < 1:8545413‑M2/68‑3 (MQ=255) gTTACTCGATTATGGTCACAAAGTCCTTCGTCAGGATTAATCCATCAAATAATGCCTGATAGCACAta < 1:30349016‑M2/68‑3 (MQ=255) gTTACTCGATTATGGTCACAAAGTCCTTCGTCAGGATTAATCCATCAAATAATGCCTGATAGCACAta > 1:32495297‑M2/1‑66 (MQ=255) gTTACTCGATTATGGTCACAAAGTCCTTCGTCAGGATTAATCCATCAAATAATGCCTGATAGCACAta > 1:11075974‑M2/1‑66 (MQ=255) gTTACTCGATTATGGTCACAAAGTCCTTCGTCAGGATTAATCCATCAAATAATGCCTGATAGCACAt > 1:21108346‑M2/1‑66 (MQ=255) cTCGATTATGGTCACAAAGTCCTTCGTCAGGATTAATCCATCAAATAATGCCTGATAGCACAtatcag < 1:20215056‑M2/68‑7 (MQ=255) tCGATTATGGTCACAAAGTCCTTCGTCAGGATTAATCCATCAAATAATGCCTGATAGCACAtatcag < 1:12890775‑M2/67‑7 (MQ=255) tCGATTATGGTCACAAAGTCCTTCGTCAGGATTAATCCATCAAATAATGCCTGATAGCACAtatcag < 1:16277754‑M2/67‑7 (MQ=255) cGATTATGGTCACAAAGTCCTTCGTCAGGATTAATCCATCAAATAATGCCTGATAGCACAtatcaggc > 1:9263706‑M2/1‑60 (MQ=255) aTTATGGTCACAAAGTCCTTCGTCAGGATTAATCCATCAAATAATGCCTGATAGCACATATCAGGCGt > 1:18949804/1‑68 (MQ=255) aTTATGGTCACAAAGTCCTTCGTCAGGATTAATCCATCAAATAATGCCTGATAGCACATATCAGGCGt > 1:32017320/1‑68 (MQ=255) aTTATGGTCACAAAGTCCTTCGTCAGGATTAATCCATCAAATAATGCCTGATAGCACATATCAGGCGt > 1:28264050/1‑68 (MQ=255) tATGGTCACAAAGTCCTTCGTCAGGATTAATCCATCAAATAATGCCTGATAGCACATATCAGGCGTTg > 1:4793743/1‑68 (MQ=255) tATGGTCACAAAGTCCTTCGTCAGGATTAATCCATCAAATAATGCCTGATAGCACATATCAGGCGTTg > 1:33433840/1‑68 (MQ=255) tATGGTCACAAAGTCCTTCGTCAGGATTAATCCATCAAATAATGCCTGATAGCACATATCAGGCGTTg < 1:29768402/68‑1 (MQ=255) tATGGTCACAAAGTCCTTCGTAAGGATTAATACATCAAATAATGCATGATAGAACATATCAGGCGTTg > 1:14694226/1‑68 (MQ=255) tATGGTCACAAAGTACTTCGTCAGGATTAATCCATCAAATAATGCCTGATAGCACATATCAGGCGTTg > 1:23674180/1‑68 (MQ=255) caTGGTCACAAAGTCCTTCGTCAGGATTAATCCATCAAATAATGCCTGCTAGCACCTATCAGGCGTTg > 1:5507269/2‑68 (MQ=255) aTGGTCACAAAGTCCTTCGTCAGGATTAATCCATCAAATAATGCCTGATAGCACATATCAGGCGTTGt < 1:31543389/68‑1 (MQ=255) aTGGTCACAAAGTCCTTCGTCAGGATTAATCCATCAAATAATGCCTGATAGCACATATCAGGCGTTGt < 1:6056493/68‑1 (MQ=255) aTGGTCACAAAGTCCTTCGTCAGGATTAATCCATCAAATAATGCCTGATAGCACATATCAGGCGTTGt < 1:7807538/68‑1 (MQ=255) ggTCACAAAGTCCTTCGTCAGGATTAATCCATCAAATAATGCCTGATAGCACATATCAGGCGTTGt > 1:5697423/1‑66 (MQ=255) ggTCACAAAGTCCTTCGTCAGGATTAATCCATCAAATAATGCCTGATAGCACATATCAGGCGTTGTcc > 1:13663065/1‑68 (MQ=255) gTCACAAAGTCCTTCGTCAGGATTAATCCATCAAATAATGCCTGATAGCACATATCAGGCGTTGTcc > 1:15102603/1‑67 (MQ=255) tCACAAAGTCCTTCGTCAGGATTAATCCATCAAATAATGCCTGATAGCACATATCAGGCGTTGTCCTc > 1:27670332/1‑68 (MQ=255) tCACAAAGTCCTTCGTCAGGATTAATCCATCAAATAATGCCAGATAGCACATATCAGGCGTTGTCCTc > 1:3131491/1‑68 (MQ=255) cacaAAGTCCTTCGTCAGGATTAATCCATCAAATAATGCCTGATAGCACATATCAGGCGTTGTCCTCa < 1:28425574/68‑1 (MQ=255) caAAGTCCTTCGTCAGGATTAATCCATCAAATAATGCCTGATAGCACATATCAGGCGTTGTCCTCAct > 1:27101337/1‑68 (MQ=255) aaaGTCCTTCGTCAGGATTAATCCATCAAATAATGCCTGATAGCACATATCAGGCGTTGTCCTCActt < 1:2094241/68‑1 (MQ=255) aaGTCCTTCTTCACGATTAATCCATCAAATAATGCCTGATAGCACATATCAGGCTTTGTCCTCActtc < 1:25167049/68‑1 (MQ=255) aaGTCCTTCGTCAGGATTAATCCATCAAATAATGCCTGATAGCACATATCAGGCGTTGTCCTCAct > 1:18175743/1‑66 (MQ=255) aGTCCTTCGTCAGGATTAATCCATCAAATAATGCCTGATAGCACATATCAGGCGTTGTCCTCActtct > 1:27508534/1‑68 (MQ=255) aGTCCTTCGTCAGGATTAATCCATCAAATAATGCCTGATAGCACATATCAGGCGTTGTCCTCActtct < 1:5295339/68‑1 (MQ=255) aGTCCTTCGTCAGGATTAATCCATCAAATAATGACTGATAGCACATATCAGGCGTTGTCCTCActtct > 1:7451400/1‑68 (MQ=255) gTCCTTCGTCAGGATTAATCCATCAAATAATGCCTGATAGCACATATCAGGCGTTGTCCTCActtctt > 1:7103467/1‑68 (MQ=255) ccTTCGTCCGGAATAATCCATCAAATAATCCCTGATAGCACAtatcaggcattatttgatggattaat > 1:5057791‑M2/1‑42 (MQ=255) ccTTCGTCAGGATTAATCCATCAAATAATGCCTGATAGCACATATCAGGCGTTGTCCTCActtctt < 1:22998892/66‑1 (MQ=255) ccTTCGTCAGGATTAATCCATCAAATAATGCCTGATAGCACATATCAGGCGTTGTCCTCActtctt < 1:32921504/66‑1 (MQ=255) ccTTCGTCAGGATTAATCCATCAAATAATGCCTGATAGCACATATCAGGCGTTGTCCTCActtctt < 1:28872802/66‑1 (MQ=255) ccTTCGTCAGGATTAATCCATCAAATAATGCCTGATAGCACATATCAGGCGTTGTCCTCActtctt < 1:26213683/66‑1 (MQ=255) ccTTCGTCAGGATTAATCCATCAAATAATGCCTGATAGCACATATCAGGCGTTGTCCTCACTTCttt < 1:17240629/67‑1 (MQ=255) gTCAGGATTAATCCATCAAATAATGCCTGATAGCACATATCAGGCGTTGTCCTCACTTCTTTTTGTAt > 1:16122581/1‑68 (MQ=255) cAGGATTAATCCATCAAATAATGCCTGATAGCACATATCAGGCGTTGTCCTCACTTCTTTTTGTATTc < 1:3791851/68‑1 (MQ=255) cAGGATTAATCCATCAAATAATGCCTGATAGCACATATCAGGCGTTGTCCTCACTTCTTTTTGTATTc < 1:8903091/68‑1 (MQ=255) aTTAATCCATCAAATAATGCCTGATAGCACATATCAGGCGTTGTCCTCACTTCTTTTTGTATTcc < 1:24917499/65‑1 (MQ=255) aTTAATCCATCAAATAATGCCTGATAGCACATATCAGGCGTTGTCCTCACTTCTTTTTGTATTcc < 1:6288825/65‑1 (MQ=255) aTTAATCCATCAAATAATGCCTGATAGCACATATCAGGCGTTGTCCTCACTTCTTTTTGTATTcc < 1:14483587/65‑1 (MQ=255) aTTAATCCATCAAATAATGCCTGATAGCACATATCAGGCGTTGTCCTCACTTCTTTTTGTATTCCTTg > 1:9066061/1‑68 (MQ=255) aTTAATCCATCAAATAATGCCTGATAGCACATATCAGGCGTTGTCCTCACTTCTTTTTGTATTCCTTg > 1:21640843/1‑68 (MQ=255) aTTAATCCATCAAATAATGCCTGATAGCACATATCAGGCGTTGTCCTCACTTCTTTTTGTATTCCTTg > 1:33719169/1‑68 (MQ=255) aTTAATCCATCAAATAATGCCTGATAGCACATATCAGGCGTTGTCCTCACTTCTTTTTGTATTCCTTg > 1:24051393/1‑68 (MQ=255) aTTAATCCATCAAATAATGCCTGATAGCACATATCAGGCGTTGTCCACACTTCTTTTTGTATTCCTTg > 1:23357822/1‑68 (MQ=255) ttAATCCATCAAATAATGCCTGATAGCAGATATCAGGCGTTGTCCTCACTTCTGTTTGTATTCCTTGa > 1:12223485/1‑68 (MQ=255) ttAATCCATCAAATAATGCCTGATAGCACATATCAGGCGTTGTCCTCACTTCTTTTTGTATTCCtttc > 1:15996201/1‑66 (MQ=255) ttAATCCATCAAATAATGCCTGATAGCACATATCAGGCGTTGTCCTCACTTCTTTTTGTATTCCTTGa > 1:22173635/1‑68 (MQ=255) tCCATCAAATAATGCCTGATAGCACATATCAGGCGTTGTCCTCACTTCTTTTTGTATTCCTTGAatc > 1:16567279/1‑67 (MQ=255) tCCATCAAATAATGCCTGATAGCACATATCAGGCGTTGTCCTCACTTCTTTTTGTATTCCTTGAatc > 1:20411587/1‑67 (MQ=255) tCCATCAAATAATGCCTGATAGCACATATCAGGCGTTGTCCTCACTTCTTTTTGTATTCCTTGAatc > 1:6596674/1‑67 (MQ=255) tCCATCAAATAATGCCTGATAGCACATATCAGGCGTTGTCCTCACTTCTTTTTGTATTCCTTGAatc > 1:10475315/1‑67 (MQ=255) ccATCAAATAATGCCTGATAGCACATATCAGGCGTTGTCCTCACTTCTTTTTGTATTCCTTGAatcac > 1:26468998/1‑68 (MQ=255) ccATCAAATAATGCCTGATAGCACATATCAGGCGTTGTCCTCACTTCTTTTTGTATTCCTTGAatcac > 1:31107389/1‑68 (MQ=255) tCAAATAATGCCTGATAGCACATATCAGGCGTTGTCCTCACTTCTTTTTGTATTCCTTGAatcacatc < 1:12577333/68‑1 (MQ=255) tCAAATAATGCCTGATAGCACATATCAGGCGTTGTCCTCACTTCTTTTTGTATTCCTTGAatcacatc < 1:15738440/68‑1 (MQ=255) tCAAATAATGCCTGATAGCACATATCAGGCGTTGTCCTCACTTCTTTTTGTATTCCTTGAatcacatc < 1:18662993/68‑1 (MQ=255) tCAAATAATGCCTGATAGCACATATCAGGCGTTGTCCTCACTTCTTTTTGTATTCCTTGAatcacatc < 1:24583002/68‑1 (MQ=255) aataatGCCTGATAGCACATATCAGGCGTTGTCCTCACTTCTTTTTGTATTCCTTGAAtcacatcaca > 1:32745981/1‑68 (MQ=255) ataatGCCTGATAGCACATATCAGGCGTTGTCCTCACTTCTTTTTGTATTCCTTGAATCACATCACaa > 1:820410/1‑68 (MQ=255) ataatGCCTGATAGCACATATCAGGCGTTGTCCTCACTTCTTTTTGTATTCCTTGAATCACATCACaa > 1:25907395/1‑68 (MQ=255) aatGCCTGATAGCACATATCAGGCGTTGTCCTCACTTCTTTTTGTATTCCTTGAATCACATCACaaaa > 1:9587340/1‑68 (MQ=255) aatGCCTGATAGCACATATCAGGCGTTGTCCTCACTTCTTTTTGTATTCCTTGAATCACATCACaaaa > 1:17481013/1‑68 (MQ=255) aatGCCTGATAGCACATATCAGGCGTTGTCCTCACTTCTTTTTGTATTCCTTGAATCACATCACaaaa > 1:19460121/1‑68 (MQ=255) gCCTGATAGCACATATCAGGCGTTGTCCTCACTTCTTTTTGTATTCCTTGAATCACATCACAAAATAg > 1:3455326/1‑68 (MQ=255) gCCTGATAGCACATATCAGGCGTTGTCCTCACTTCTTTTTGTATTCCTTGAATCACATCACAAAATAg > 1:22421409/1‑68 (MQ=255) ccTGATAGCACATATCAGGCGTTGTCCTCACTTCTTTTTGTATTCCTTGAATCACATCACAAAATAg > 1:31810723/1‑67 (MQ=255) ccTGATAGCACATATCAGGCGTTGTCCTCACTTCTTTTTGTATTCCTTGAATCACATCACAAAATAg > 1:32314136/1‑67 (MQ=255) ccTGATAGCACATATCAGGCGTTGTCCTCACTTCTTTTTGTATTCCTTGAATCACATCACAAAATAg > 1:11412476/1‑67 (MQ=255) ccTGATAGCACATATCAGGCGTTGTCCTCACTTCTTTTTGTATTCCTTGAATCACATCACAAAATAg > 1:33051105/1‑67 (MQ=255) ccTGATAGCACATATCAGGCGTTGTCCTCACTTCTTTTTGTATTCCTTGAATCACATCACAAAATAg > 1:34073950/1‑67 (MQ=255) ccTGATAGCACATATCAGGCGTTGTCCTCACTTCTTTTTGTATTCCTTGAATAAAATCACAAAATAg > 1:14011322/1‑67 (MQ=255) ccTGATAGCACATATAAGGCGTTGTCCTCACTTCTTTTTGTATTACTTGAATCACATCACAAAATAg > 1:16777285/1‑67 (MQ=255) aTAGCACATATCAGGCGTTGTCCTCACTTCTTTTTGTATTCCTTGAATCACATCACAAAATAGACaaa > 1:19257544/1‑68 (MQ=255) tAGCACATATCAGGCGTTGTCCTCACTTCTTTTTGTATTCCTTGAATCACATCACAAAATAGACaaa < 1:10795186/67‑1 (MQ=255) aGCACATATCAGGCGTTGTCCTCACTTCTTTTTGTATTCCTTGAATCACATCACAAAATAGACaaa > 1:2869833/1‑66 (MQ=255) aGCACATATCAGGCGTTGTCCTCACTTCTTTTTGTATTCCTTGAATCACATCACAAAATAGACaaa > 1:6924360/1‑66 (MQ=255) aGCACATATCAGGCGTTGTCCTCACTTCTTTTTGTATTCCTTGAATCACATCACAAAATAGACaaa > 1:24346217/1‑66 (MQ=255) aGCACATATCAGGCGTTGTCCTCACTTCTTTTTGTATTCCTTGAATCACATCACAAAATAGACaaa > 1:4164025/1‑66 (MQ=255) aGCACATATCAGGCGTTGTCCTCACTTCTTTTTGTATTCCTTGAATCACATCACAAAATAGACaaa > 1:13149947/1‑66 (MQ=255) acaTATCAGGCGTTGTCCTCACTTCTTTTTGTATTCCTTGAATCACATCACAAAATAGACAAATCTCa > 1:25521356/1‑68 (MQ=255) acaTATCAGGCGTTGTCCTCACTTCTTTTTGTATTCCTTGAATCACATCACAAAATAGACAAATCTCa > 1:3074333/1‑68 (MQ=255) acaTATCAGGCGTTGTCCTCACTTCTTTTTGTATTCCTTGAATCACATCACAAAATAGACAAATCTCa > 1:14798455/1‑68 (MQ=255) acaTATCAGGCGTTGTCCTCACTTCTTTTTGTATTCCTTGAATCACATCACAAAATAGACAAATCTCa > 1:15440933/1‑68 (MQ=255) acaTATCAGGCGTTGTCCTCACTTCTTTTTGTATTCCTTGAATCACATCACAAAATAGACAAATCTCa > 1:1763514/1‑68 (MQ=255) atatCAGGCGTTGTCCTCACTTCTTTTTGTATTCCTTGAATCACATCACAAAATAGACAAATCTCAg > 1:30047596/1‑67 (MQ=255) | GCGTTACTCGATTATGGTCACAAAGTCCTTCGTCAGGATTAATCCATCAAATAATGCCTGATAGCACATATCAGGCGTTGTCCTCACTTCTTTTTGTATTCCTTGAATCACATCACAAAATAGACAAATCTCAG > CP009273/3053964‑3054097 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |