| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 1209039 = | 391 (0.880) | 38 (0.100) | 12/92 | NT | 11.4% | coding (477/732 nt) | bluR | repressor of blue light‑responsive genes |
| ? | CP009273 | 1209089 = | 269 (0.740) | coding (427/732 nt) | bluR | repressor of blue light‑responsive genes | |||||
Only 100 of 208 total aligned reads displayed.
TCCCGCATTATGAGCAGTATGTTTGACGGCGCATTAATTGAATACGCAGCAACCTCGCTTTTCGAAATGCGCCGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/1209113‑1209039‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aatgcgccgtCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACAGGAAGGT > CP009273/1209089‑1209154 TCCCGCATTATGAGCAGTATGTTTGACGGCGCATTAATTGAATACGCAGCAACCTCGCTTTTCGAAAT > 1:9430956/1‑68TCCCGCATTATGAGCAGTATGTTTGACGGCGCATTAATTGAATACGCAGCAACCTCGCTTTTCGAAAT > 1:21630247/1‑68TCCCGCATTATGAGCAGTATGTTTGACGGCGCATTAATTGAATACGCAGCAACCTCGCTTTTCGAAAT > 1:18910723/1‑68TCCCGCATTATGAGCAGTATGTTTGACGGCGCATTAATTGAATACGCAGCAACCTCGCTTTTCGAAAT > 1:24835273/1‑68TCCCGCATTATGAGCAGTATGTTTGACGGCGCATTAATTGAATACGCAGCAACCTCGCTTTTCGAAAT > 1:25882402/1‑68TCCCGCATTATGAGCAGTATGTTTGACGGCGCATTAATTGAATACGCAGCAACCTCGCTTTTCGAAAT > 1:15596871/1‑68TCCCGCATTATGAGCAGTATGTTTGACGGCGCATTAATTGAATACGCAGCAACCTCGCTTTTAGAAAT > 1:14205836/1‑68TCCCGCATTATGAGCAGTATGTTTGAAGCCGCATTAATTGAATACGCAGCAACCTCGCTTTTCGAAAT > 1:13844978/1‑68 CCGCATTATGAGCAGTATGTTTGACGGCGCATTAATTGAATACGCAGCAACCTCGCTTTTCGAAATGC > 1:11213114/1‑68 CGCATTATGAGCAGTATGTTTGACGGCGCATTAATTGAATACGCAGCAACCTCGCTTTTCGAAATGC > 1:12678870/1‑67 GCATTATGAGCAGTATGTTTGACGGCGCATTAATTGAATACGCAGCAACCTCGCTTTTCGAAATGCGC < 1:6098897/68‑1 CATTATGAGCAGTATGTTTGACGGCGCATTAATTGAATACGCAGCACCCTCGCTTTTCGAAATGCGCC > 1:18116625/1‑68 CATTATGAGCAGTATGTTTGACGGCGCATTAATTGAATACGCAGCAACCTCGCTTTTCGAAATGCGCC > 1:20031216/1‑68 CATTATGAGCAGTATGTTTGACGGCGCATTAATTGAATACGCAGCAACCTCGCTTTTCGAAATGCGCC > 1:36602142/1‑68 CATTATGAGCAGTATGTTTGACGGCGCATTAATTGAATACGCAGCAACCTCGCTTTTCGAAATGCGCC > 1:23007566/1‑68 CATTATGAGCAGTATGTTTGACGGCGCATTAATTGAATACGCAGCAACCTCGCTTTTCGAAATGCGCC > 1:14298290/1‑68 CATTATGAGCAGTATGTTTGACGGCGCATTAATTGAATACGCAGCAACCTCGCTTTTCGAAATGCGCC > 1:14347756/1‑68 ATTATGAGCAGTATGTTTGACGGCGCATTAATTGAATACGCAGCAACCTCGCTTTTCGAAATGCGCC < 1:8377348/67‑1 ATTATGAGCAGTATGTTTGACGGCGCATTAATTGAATACGCAGCAACCTCGCTTTTCGAAATGCGCC < 1:20246928/67‑1 ATTATGAGCAGTATGTTTGACGGCGCATTAATTGAATACGCAGCAACCTCGCTTTTCGAAATGCGCC < 1:22774320/67‑1 ATTATGAGCAGTATGTTTGACGGCGCATTAATTGAATACGCAGCAACCTCGCTTTTCGAAATGCGCC < 1:19147149/67‑1 ATTATGAGCAGTATGTTTGACGGCGCATTAATTGAATACGCAGCAACCTCGCTTTTCGAAATGCGCC < 1:7955429/67‑1 ATTATGAGCAGTATGTTTGACGGCGCATTAATTGAATACGCAGCAACCTCGCTTTTCGAAATGCGCC < 1:14609229/67‑1 ATTATGAGCAGTATGTTTGACGGCGCATTAATTGAATACGCAGCAACCTCGCTTTTCGAAATGCGCC < 1:36369799/67‑1 ATTATGAGCAGTATGTTTGACGGCGCATTAATTGAATACGCAGCAACCTCGCTTTTCGAAATGCGCC < 1:36866825/67‑1 ATTATGAGCAGTATGTTTGACGGCGCATTAATTGAATACGCAGCAACCTCGCTTTTCGAAATGCGCC < 1:4146075/67‑1 ATTATGAGCAGTATGTTTGACGGCGCATTAATTGAATACGCAGCAACCTCACTTTTCGAAATGCGCC < 1:26250937/67‑1 TTATGAGCAGTATGTTTGACGGCGCATTAATTGAATACGCAGCAACCTCGCTTTTCGAAATGCGCCGT < 1:871699/68‑1 TTATGAGCAGTATGTTTGACGGCGCATTAATTGAATACGCAGCAACCTCGCTTTTCGAAATGCGCCGT < 1:10765530/68‑1 ATGCGCAGTATGTTTGACGGCGCATTAATTGAATACGCAGCAACCTCGCTTTTCGAAATGCGCCGTCA < 1:25801755/68‑1 ATGAGCAGTATGTTTGACGGCGCATTAATTGAATACGCAGCAACCTCGCTTTTCGAAATGCGCCGTCA < 1:1652646/68‑1 ATGAGCAGTATGTTTGACGGCGCATTAATTGAATACGCAGCAACCTCGCTTTTCGAAATGCGCCGTCA < 1:33740668/68‑1 ATGAGCAGTATGTTTGACGGCGCATTAATTGAATACGCAGCAACCTCGCTTTTCGAAATGCGCCGTCA < 1:12206171/68‑1 ATGAGCAGTATGTTTGACGGCGCATTAATTGAATACGCAGCAACCTCGCTTTTCGAAATGCGCCGTCA < 1:22430658/68‑1 ATGAGCAGTATGTTTGACGGCGCATTAATTGAATACGCAGCAACCTCGCTTTTCGAAATGCGCCGTCA < 1:21805003/68‑1 ATGAGCAGTATGTTTGACGGCGCATTAATTGAATACGCAGCAACCTCGCATTTCGAAATGCGCCGTCA < 1:33167211/68‑1 GAGCAGTATGTTTGACGGCGCATTAATTGAATACGCAGCAACCTCGCTTTTCGAAATGCGCCGTCAAA < 1:26595300/68‑1 GAGCAGTATGTTTGACGGCGCATTAATTGAATACGCAGCAACCTCGCTTTTCGAAATGCGCCGTCAAA < 1:12876652/68‑1 TGTTTGACGGCGCATTAATTGAATACGCAGCAACCTCGCTTTTCGAAATGCGCCGTCAAACATACTGC < 1:13379097/68‑1 TGTTTGACGGCGCATTAATTGAATACGCAGCAACCTCGCTTTTCGAAATGCGCCGTCAAACATACTGC < 1:3462220/68‑1 TGTTTGACGGCGCATTAATTGAATACGCAGCAACCTCGCTTTTCGAAATGCGCCGTCAAACATACTGC < 1:26875779/68‑1 GTTTGACGGCGCATTAATTGAATACGCAGCAACCTCGCTTATCGAAATGCGCCGTCAAACATACTGCT < 1:33252230/68‑1 GGCGCATTAATTGAATACGCAGCAACCGCGCTTTTCGAAATGCGCCGTCAAACATACTGCTCATAATG < 1:29587690/68‑1 GCATTAATTGAATACGCAGCAACCTCGCTTTTCGAAATGCGCCGTCAAACATACTGCTCATAATGCGG < 1:11608291/68‑1 ATTAATTGAATACGCAGCAACCTCGCTTTTCGAAATGCGCCGTCAAACATACTGCTCATAATGCGGGA < 1:6435750/68‑1 ATTAATTGAATACGCAGCAACCTCGCTTTTCGAAATGCGCCGTCAAACATACTGCTCATAATGCGGGA < 1:28710017/68‑1 TAATTGAATACGCAGCAACCTCGCTTTTCGAAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGG < 1:3067866/68‑1 TAATTGAATACGCAGCAACCTCGCTTTTCGAAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGG < 1:35116545/68‑1 cATTGAATACGCAGCAACCTCGCTTTTCGAAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGGT < 1:4046736/67‑1 AATTGAATACGCAGCAACCTCGCTTTTCGAAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGGT < 1:31905104/68‑1 AATTGAATACGCAGCAACCTCGCTTTTCGAAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGGT < 1:6686412/68‑1 TTGAATACGCAGCAACCTCGCTTTTCGAAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGGTGT < 1:21445528/68‑1 TTGAATACGCAGCAACCTCGCTTTTCGAAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGGTGT < 1:19495966/68‑1 TTGAATACGCAGCAACCTCGCTTTTCGAAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGGTGT < 1:25154849/68‑1 aaACGCAGCAACCTCGCTTTTCGAAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGGTGTTGT < 1:23454571/65‑1 AATGCGCCGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAAC < 1:13502972/68‑1 AATGCGCCGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAAC < 1:9029916/68‑1 AATGCGCCGTCAAACATACTGCTCATAATGCGGGAGGTGTCGTGATCAAGCACGAGACGCTGGCGAAC < 1:34255093/68‑1 ATGCGCCGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACA < 1:4584209/68‑1 ATGCGCCGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACA < 1:29355812/68‑1 TGCGCCGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCCCGAGACGCTGGCGAACAG > 1:2856755/1‑68 TGCGCCGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACAG > 1:1481479/1‑68 TGCGCCGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACAG > 1:15892577/1‑68 TGCGCCGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACAG > 1:24388400/1‑68 TGCGCCGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACAG > 1:18555902/1‑68 TGCGCCGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACAG > 1:4857226/1‑68 TGCGCCGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACAG > 1:6484216/1‑68 TGCGCCGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACAG > 1:32362271/1‑68 TGCGCCGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACAG > 1:27218493/1‑68 TGCGCCGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACAG > 1:2540105/1‑68 TGCGCCGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACAG > 1:28968441/1‑68 TGCGCCGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACAG > 1:28819924/1‑68 TGCGCCGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGAT > 1:33486237/1‑44 GCGCCGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACAGG < 1:17774565/68‑1 GCGCCGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACAGG < 1:11517350/68‑1 GCGCCGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACAGG < 1:2835930/68‑1 GCGCCGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACAGG < 1:30040140/68‑1 GCGCCGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACAGG < 1:352069/68‑1 CGCCGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACAGGA > 1:32873642/1‑68 CGCCGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACAGGA > 1:27622395/1‑68 CGCCGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACAGGA > 1:7785043/1‑68 CGCCGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACAGGA > 1:18393699/1‑68 CGCCGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACAGGA > 1:31971065/1‑68 GCCGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACAGGAA < 1:31146353/68‑1 CGTCAAACATTCTGCGCATAATGCGGGAGGTGGTGTGATCAAGCACGAGACGCTGGCGAACAGGAAG < 1:16126962/67‑1 CGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACAGGAAGG < 1:10414503/68‑1 CGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACAGGAAGG < 1:1110312/68‑1 CGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACAGGAAGG < 1:8784523/68‑1 CGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACAGGAAGG < 1:580381/68‑1 CGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACAGGAAGG < 1:5380864/68‑1 CGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACAGGAAGG < 1:365290/68‑1 CGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACAGGAAGG < 1:34474279/68‑1 CGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACAGGAAGG < 1:13707884/68‑1 CGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACAGGAAGG < 1:10275460/68‑1 CGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACAGGAAG < 1:12485472/67‑1 CGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACAGGAAG < 1:7524268/67‑1 CGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACAGGAAG < 1:31020503/67‑1 CGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACAGGAAG < 1:2071451/67‑1 CGTCAAACATACTGCTCATAATGCGGGAGGGGTTGTGATCAAGCACGAGACGCTGGCGAACAGGAAGG < 1:24657722/68‑1 CGTCAAACATACTGCTCATAATGCGGGAGGGGTTGTGATCAAGCACGAGACGCTGGCGAACAGGAAG < 1:11793196/67‑1 TCCCGCATTATGAGCAGTATGTTTGACGGCGCATTAATTGAATACGCAGCAACCTCGCTTTTCGAAATGCGCCGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/1209113‑1209039‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aatgcgccgtCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACAGGAAGGT > CP009273/1209089‑1209154 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |