| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 1209039 = | 391 (0.880) | 38 (0.100) | 12/92 | NT | 11.4% | coding (477/732 nt) | bluR | repressor of blue light‑responsive genes |
| ? | CP009273 | 1209089 = | 269 (0.740) | coding (427/732 nt) | bluR | repressor of blue light‑responsive genes | |||||
Only 100 of 768 total aligned reads displayed.
TTCCAGCCACAATCGTGCTCTCTCTTCAACATTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAA > CP009273/1208973‑1209106 | tCCAGCCACAATCGTGCTCTCTCTTCAACATTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACG > 1:6972280‑M1/1‑68 (MQ=255) ccttcctgttcgccagcgtctcgtgcttgatcacaacacctcccgcattatgagcagtatgtttgACg < 1:10275460‑M1/3‑1 (MQ=255) ttcctgttcgccagcgtctcgtgcttgatcacaacacctcccgcattatgagcagtatgtttgACGgc < 1:31146353‑M1/5‑1 (MQ=255) cAGCCACAATCGTGCTCTCTCTTCAACATTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGC < 1:3045624‑M1/68‑1 (MQ=255) cAGCCACAATCGTGCTCTCTCTTCAACATTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGC < 1:23307106‑M1/68‑1 (MQ=255) tcctgttcgccagcgtctcgtgcttgatcacaacacctcccgcattatgagcagtatgtttgACGgcg > 1:32873642‑M1/63‑68 (MQ=255) ctgttcgccagcgtctcgtgcttgatcacaacacctcccgcattatgagcagtatgtttgACGGCGCa > 1:9667253‑M1/61‑68 (MQ=255) ctgttcgccagcgtctcgtgcttgatcacaacacctcccgcattatgagcagtatgtttgACGGCGCa > 1:6484216‑M1/61‑68 (MQ=255) ctgttcgccagcgtctcgtgcttgatcacaacacctcccgcattatgagcagtatgtttgACGGCGCa > 1:4857226‑M1/61‑68 (MQ=255) ctgttcgccagcgtctcgtgcttgatcacaacacctcccgcattatgagcagtatgtttgACGGCGCa > 1:29321269‑M1/61‑68 (MQ=255) ctgttcgccagcgtctcgtgcttgatcacaacacctcccgcattatgagcagtatgtttgACGGCGCa > 1:2540105‑M1/61‑68 (MQ=255) ctgttcgccagcgtctcgtgcttgatcacaacacctcccgcattatgagcagtatgtttgACGGCGCa > 1:17814615‑M1/61‑68 (MQ=255) ccACAATCGTGCTCTCTCTTCAACATTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCA > 1:26279110‑M1/1‑68 (MQ=255) tgttcgccagcgtctcgtgcttgatcacaacacctcccgcattatgagcagtatgtttgACGGCGCAt < 1:4584209‑M1/9‑1 (MQ=255) aTCGTGCTCTCTCTTCAACATTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCg > 1:25967668/1‑68 (MQ=255) gCTCTCTCTTCAACATTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGaaaa < 1:18687398/67‑1 (MQ=255) tctctctTCAACATTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCg > 1:32568758/1‑68 (MQ=255) tctctctTCAACATTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCg > 1:33352557/1‑68 (MQ=255) tctctctTCAACATTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCg > 1:23956967/1‑68 (MQ=255) tctctTCAACATTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGATAAGCGAg > 1:2300935/1‑68 (MQ=255) tctctTCAACATTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAg > 1:10752301/1‑68 (MQ=255) tctctTCAACATTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAg > 1:1748580/1‑68 (MQ=255) tctTCAACATTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGt < 1:24346548/68‑1 (MQ=255) ctTCAACATTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGtt > 1:33210768/1‑68 (MQ=255) tCAACATTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGtt > 1:12430064/1‑66 (MQ=255) aCATTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTaattgaatacgcagcaacc > 1:8932100‑M1/1‑48 (MQ=255) aCATTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTtgctgc > 1:18028075/1‑68 (MQ=255) aCATTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTtgctgc > 1:8465479/1‑68 (MQ=255) aCATTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTtgctgc > 1:24539010/1‑68 (MQ=255) aCATTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTtgctgc > 1:33996397/1‑68 (MQ=255) aCATTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTtgctgc > 1:27478988/1‑68 (MQ=255) aCATTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTtgctgc > 1:21060166/1‑68 (MQ=255) aCATTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTtgctgc > 1:31549556/1‑68 (MQ=255) aCATTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTtgctgc > 1:36810160/1‑68 (MQ=255) atcacaacacctcccgcattatgagcagtatgtttgACGGCGCa > 1:33486237‑M1/37‑44 (MQ=255) aTTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGt < 1:3957123/68‑1 (MQ=255) aTTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGt < 1:35977730/68‑1 (MQ=255) aTTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGt < 1:589346/68‑1 (MQ=255) aTTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGt > 1:11135694/1‑68 (MQ=255) aTTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGt > 1:3073703/1‑68 (MQ=255) ttCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTa < 1:14493112/68‑1 (MQ=255) tCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTAt > 1:15286551/1‑68 (MQ=255) tCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTAt > 1:16203615/1‑68 (MQ=255) ccACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTAtt > 1:34916089/1‑68 (MQ=255) ccACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTAt > 1:19809453/1‑67 (MQ=255) aCGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCa < 1:26985427/68‑1 (MQ=255) aCGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCa > 1:19230279/1‑68 (MQ=255) cgcgATCAGAATGGCTTATTTCCCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTAttgat < 1:23769863/68‑4 (MQ=255) acacctcccgcattatgagcagtatgtttgACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCaa < 1:21445528‑M1/38‑1 (MQ=255) gCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAAt > 1:1671419/1‑68 (MQ=255) ccATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAAtt > 1:5512222/1‑68 (MQ=255) ccATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAAtt > 1:24995732/1‑68 (MQ=255) cATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAAtt < 1:36468035/67‑1 (MQ=255) aaTGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTaatgcg < 1:15915709‑M2/67‑7 (MQ=255) ctgGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTaatgcgcc > 1:27995436‑M2/2‑60 (MQ=255) aTGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTaatgcgcc > 1:7480231‑M2/1‑60 (MQ=255) aTGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTaatgcgcc > 1:35338529‑M2/1‑60 (MQ=255) aTGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTaatgcgcc > 1:4149764‑M2/1‑60 (MQ=255) tGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTaatgcgccg < 1:35844469‑M2/68‑10 (MQ=255) tGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTaatgcgccg < 1:10035899‑M2/68‑10 (MQ=255) ggCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTaatgcgccgt > 1:14136606‑M2/1‑58 (MQ=255) ggCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTaatgcgccgt > 1:14931938‑M2/1‑58 (MQ=255) ggCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTaatgcgccgt > 1:28548688‑M2/1‑58 (MQ=255) ggCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTaatgcgccgt > 1:31996970‑M2/1‑58 (MQ=255) ggCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTaatgcgccgt > 1:20568388‑M2/1‑58 (MQ=255) ggCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTaatgcgccgt > 1:3453338‑M2/1‑58 (MQ=255) ggCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTaatgcgccgt > 1:34411341‑M2/1‑58 (MQ=255) ggCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTaatgcgccgt > 1:24239831‑M2/1‑58 (MQ=255) ggCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTaatgcgccg < 1:31716443‑M2/67‑10 (MQ=255) gCTTCTTTACCGGGCTTACGGCGCATTaattgaatacgcagcaccctcgctgttcgaaatgcgccgta > 1:15612461‑M1/1‑27 (MQ=255) gCTTCTTTACCGGGCTTACGGCGCATTaattgaatacgcagcaacctcgcttttcgaaatgcgccgta > 1:19488876‑M1/1‑27 (MQ=255) gCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTc > 1:21695919/1‑68 (MQ=255) cttcttTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTaatgcgccgt > 1:30089597‑M2/1‑56 (MQ=255) ttgtttACCGGGCTTACGGGGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCa < 1:13724782/64‑1 (MQ=255) ttcttTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCaa > 1:7735777/1‑68 (MQ=255) ttcttTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCa < 1:9276528/67‑1 (MQ=255) ttcttTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCa < 1:789160/67‑1 (MQ=255) ttcttTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGGTGCTGCGTATTCAATTAATGCGCCGTCa < 1:26607017/67‑1 (MQ=255) cttTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAAc < 1:8696335/68‑1 (MQ=255) cttTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAAc < 1:7291380/68‑1 (MQ=255) agcagtatgtttgACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAAc < 1:18308093‑M1/55‑1 (MQ=255) gcagtatgtttgACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACa < 1:13379097‑M1/56‑1 (MQ=255) gcagtatgtttgACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACa < 1:22102965‑M1/56‑1 (MQ=255) ttACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACAt > 1:2229160/1‑68 (MQ=255) tACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACAt > 1:20207546/1‑67 (MQ=255) ccGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACt < 1:14011364/68‑1 (MQ=255) gCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCt < 1:32294844/67‑1 (MQ=255) gCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTc > 1:13031396/1‑68 (MQ=255) ttACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCa < 1:11755118/67‑1 (MQ=255) tgACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCAt < 1:1652646‑M1/66‑1 (MQ=255) tgACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCAt < 1:12206171‑M1/66‑1 (MQ=255) tgACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCAt < 1:12711731‑M1/66‑1 (MQ=255) tgACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCAt < 1:22430658‑M1/66‑1 (MQ=255) tgACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCGCAt < 1:25801755‑M1/66‑1 (MQ=255) tACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATa < 1:17042715/68‑1 (MQ=255) tACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATa < 1:28747699/68‑1 (MQ=255) aCGGCGCATTaattgaatacgcagcaacctcgcttttcgaaatgcgccgtaagcccggtaaagaagcc > 1:11465574‑M1/1‑10 (MQ=255) aCGGCGCATTaattgaatacgcagcaacctcgcttttcgaaatgcgccgtaagcccggtaaagaagcc > 1:19154218‑M1/1‑10 (MQ=255) aCGGCGCATTaattgaatacgcagcaacctcgcttttcgaaatgcgccgtaagcccggtaaagaagcc > 1:14858985‑M1/1‑10 (MQ=255) aCGGCGCATTaattgaatacgcagcaacctcgcttttcgaaatgcgccgtaagcccggtaaagaagcc > 1:2979014‑M1/1‑10 (MQ=255) | TTCCAGCCACAATCGTGCTCTCTCTTCAACATTCCACGCCATCAGAATGGCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAA > CP009273/1208973‑1209106 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |