| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 1209039 = | 391 (0.880) | 38 (0.100) | 12/92 | NT | 11.4% | coding (477/732 nt) | bluR | repressor of blue light‑responsive genes |
| ? | CP009273 | 1209089 = | 269 (0.740) | coding (427/732 nt) | bluR | repressor of blue light‑responsive genes | |||||
Only 100 of 629 total aligned reads displayed.
GCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACAGGAAGGTAA > CP009273/1209022‑1209156 | gCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTc > 1:21695919/1‑68 (MQ=255) cttcttTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCa > 1:33270291/1‑68 (MQ=255) atgagcagtatgtttgacggcgcattaattgaatacgcagcaacctcgcttttcgaaatgcgccgtCa < 1:10882747‑M2/2‑1 (MQ=255) atgagcagtatgtttgacggcgcattaattgaatacgcagcaacctcgcttttcgaaatgcgccgtCa < 1:33108056‑M2/2‑1 (MQ=255) atgagcagtatgtttgacggcgcattaattgaatacgcagcaacctcgcttttcgaaatgcgccgtCa < 1:12711731‑M2/2‑1 (MQ=255) atgagcagtatgtttgacggcgcattaattgaatacgcagcaacctcgcttttcgaaatgcaccgtCa < 1:962360‑M2/2‑1 (MQ=255) ttcttTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCa < 1:26206285/67‑1 (MQ=255) ttcttTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCa < 1:36472987/67‑1 (MQ=255) ttcttTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCa < 1:31288064/67‑1 (MQ=255) ttcttTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCa < 1:3053201/67‑1 (MQ=255) ttcttTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCa < 1:223360/67‑1 (MQ=255) ttcttTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCa < 1:18333838/67‑1 (MQ=255) tgcttTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCa < 1:17740881/65‑1 (MQ=255) cttTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAAc < 1:7684044/68‑1 (MQ=255) gcagtatgtttgacggcgcattaattgaatacgcagcaacctcgcttttcgaaatgcgccgtCAAAc < 1:16579961‑M2/5‑1 (MQ=255) gcagtatgtttgACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACa < 1:22102965‑M1/56‑1 (MQ=255) ttACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACAt > 1:31704227/1‑68 (MQ=255) ttACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACAt < 1:2731242/68‑1 (MQ=255) ttACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACAt > 1:24052566/1‑68 (MQ=255) aCCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACAt > 1:24467677/1‑66 (MQ=255) cGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACt > 1:12205463/1‑67 (MQ=255) cGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTg < 1:16192090/68‑1 (MQ=255) cGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTg < 1:25621764/68‑1 (MQ=255) tgtttgacggcgcattaattgaatacgcagcaacctcgcttttcgaaatgcgccgtCAAACATACTGc < 1:3462220‑M2/12‑1 (MQ=255) gggCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGc < 1:9406723/68‑1 (MQ=255) gggCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGc < 1:11792317/68‑1 (MQ=255) gggCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGc < 1:28730489/68‑1 (MQ=255) gggCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGc < 1:6017899/68‑1 (MQ=255) gggCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGc < 1:15361536/68‑1 (MQ=255) gtttgacggcgcattaattgaatacgcagcaacctcgcttttcgaaatgcgccgtCAAACATACTGCt < 1:2587839‑M2/13‑1 (MQ=255) gCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCt < 1:32294844/67‑1 (MQ=255) gCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCt < 1:8566291/67‑1 (MQ=255) gCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTc > 1:8246537/1‑68 (MQ=255) cTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTc < 1:10065757/67‑1 (MQ=255) tACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATa < 1:5734735/68‑1 (MQ=255) tACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATa < 1:7090638/68‑1 (MQ=255) tACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATa < 1:17286318/68‑1 (MQ=255) GGCGGATTTCGAAAAGCGAGGGTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAATg > 1:28384022‑M1/1‑68 (MQ=255) GGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAAt < 1:20246928‑M1/67‑1 (MQ=255) GGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAATg > 1:6429383‑M1/1‑68 (MQ=255) GGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAATg > 1:14347756‑M1/1‑68 (MQ=255) GGCGCATTTCGAAAAGCGAGGTTGCTGCGGATTCAATTAATGCGCCGTCAAACATACTGCTCATAAt < 1:780642‑M1/67‑1 (MQ=255) GCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAATGc < 1:27930033‑M1/68‑1 (MQ=255) ATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGGa > 1:24835273‑M1/1‑68 (MQ=255) ATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGGa > 1:36685671‑M1/1‑68 (MQ=255) taattgaatacgcagcaacctcgcttttcgaaatgcgccgtCAAACATACTGCTCATAATGCGGGAgg < 1:3067866‑M2/27‑1 (MQ=255) TTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCt > 1:5329475‑M1/1‑54 (MQ=255) tCGATAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGgt < 1:31963538/68‑1 (MQ=255) tCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGgt < 1:13027281/68‑1 (MQ=255) tCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGgt < 1:3402621/68‑1 (MQ=255) tCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGgt < 1:21171392/68‑1 (MQ=255) tCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGgt < 1:26814346/68‑1 (MQ=255) tCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGgt < 1:6661751/68‑1 (MQ=255) tCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGgt < 1:9220221/68‑1 (MQ=255) tCGAAAAGCGAGGTGGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGgt < 1:25220274/68‑1 (MQ=255) aattgaatacgcagcaacctcgcttttcgaaatgcgccgtCAAACATACTGCTCATAATGCGGGAGgt < 1:10312751‑M2/28‑1 (MQ=255) gAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGGCGTCAAACATACTGCTCATAATGCGGGAGgtgt < 1:33519560/68‑1 (MQ=255) gAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGgtgt < 1:4112836/68‑1 (MQ=255) gAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGgtgt < 1:18764414/68‑1 (MQ=255) gAAAAGCGAGGTTGCTGCGTATTCAATTAATGCACCGTCAAACATACTGCTCATAATGCGGGAGgtgt < 1:1389261/68‑1 (MQ=255) gAAAAGCGAGGTTGCGGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGgtgt < 1:37044235/68‑1 (MQ=255) aaGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGGtgttgt < 1:35387786/68‑1 (MQ=255) aaGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGGtgttgt < 1:32812186/68‑1 (MQ=255) aaGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGGtgttgt < 1:13727276/68‑1 (MQ=255) aaacgcagcaacctcgcttttcgaaatgcgccgtCAAACATACTGCTCATAATGCGGGAGGtgttgt < 1:23454571‑M2/33‑1 (MQ=255) gAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGAt < 1:14174871/67‑1 (MQ=255) gTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCaa > 1:191156/1‑67 (MQ=255) tgctgcGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGc < 1:25132089/67‑1 (MQ=255) tgctgcGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGc < 1:21567705/67‑1 (MQ=255) tgcGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACga > 1:19223948/1‑68 (MQ=255) cGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACgag > 1:18039721/1‑67 (MQ=255) ttCAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGAc > 1:1063079/1‑65 (MQ=255) ttCAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCt < 1:22569770/68‑1 (MQ=255) ttCAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCt < 1:16975154/68‑1 (MQ=255) ttCAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCt < 1:20663802/68‑1 (MQ=255) cAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTgg < 1:1254400/68‑1 (MQ=255) cAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTgg < 1:33167325/68‑1 (MQ=255) cAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTg > 1:36050435/1‑67 (MQ=255) aTTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCg > 1:15123800/1‑68 (MQ=255) aTTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCg > 1:22776723/1‑68 (MQ=255) aTTAATGAGCCGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCg > 1:7325175/1‑68 (MQ=255) ttAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGa < 1:19426637/68‑1 (MQ=255) ttAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGa > 1:23158589/1‑68 (MQ=255) atgcgccgtCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACa < 1:4584209‑M2/59‑1 (MQ=255) tgcgccgtCAAACATACTGCTCATAATGCGGGAGGtgtt > 1:26541207‑M2/9‑39 (MQ=255) tgcgccgtCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACAg > 1:18555902‑M2/9‑68 (MQ=255) tgcgccgtCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACAg > 1:28968441‑M2/9‑68 (MQ=255) tgcgccgtCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACAg > 1:1481479‑M2/9‑68 (MQ=255) tgcgccgtCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACAg > 1:15892577‑M2/9‑68 (MQ=255) tgcgccgtCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACAg > 1:13467385‑M2/9‑68 (MQ=255) tgcgccgtCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACAg > 1:4857226‑M2/9‑68 (MQ=255) gcgccgtCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACAgg < 1:2710590‑M2/61‑1 (MQ=255) gcgccgtCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACAgg < 1:11517350‑M2/61‑1 (MQ=255) cgccgtCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACAGGa > 1:19958306‑M2/7‑68 (MQ=255) cgtCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACAGGAAgg < 1:29491845‑M2/65‑1 (MQ=255) cgtCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACAGGAAgg < 1:8784523‑M2/65‑1 (MQ=255) cgtCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACAGGAAgg < 1:34474279‑M2/65‑1 (MQ=255) cgtCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACAGGAAg < 1:31020503‑M2/64‑1 (MQ=255) cAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACAGGAAGGTaa < 1:29963581/68‑1 (MQ=255) cAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACAGGAAGGTaa < 1:35138324/68‑1 (MQ=255) | GCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACAGGAAGGTAA > CP009273/1209022‑1209156 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |