| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 1228897 = | 407 (0.910) | 241 (0.590) | 55/102 | NT | 40.8% | coding (1277/1542 nt) | nhaB | sodium:proton antiporter |
| ? | CP009273 | = 1298865 | 329 (0.810) | coding (775/909 nt) | oppC | oligopeptide transporter subunit | |||||
Only 100 of 398 total aligned reads displayed.
TTCGGATAACGTCTTCGTGGGGACGATTTATATCAACGAAGCGAAAGCGGCAATGGAAAGTGGCGCTATCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/1228968‑1228897‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcacTCAGCAATGCACCCCAGCTGCTTAACGGCTCTTGCGTACCCAACCCCAGGAAGCTAAGGAAAGATTC < CP009273/1298865‑1298799 TTCGGATAACGTCTTCGTGGGGACGATTTATATCAACGAAGCGAAAGCGGCAATGGAAAGTGGCGCTA > 1:31974199/1‑68TTCGGATAACGTCTTCGTGGGGACGATTTATATCAACGAAGCGAAAGCGGCAATGGAAAGTGGCGCTA > 1:30044225/1‑68TTCGGATAACGTCTTCGTGGGGACGATTTATATCAACGAAGCGAAAGCGGCAATGGAAAGTGGCGCTA > 1:12723841/1‑68TTCGGATAACGTCTTCGTGGGGACGATTTATATCAACGAAGCGAAAGCGGCAATGGAAAGTGGCGCTA > 1:12028928/1‑68TTCGGATAACGTCTTCGTGGGGACGATTTATATCAACGAAGCGAAAGCGGCAATGGAAAGTGGCGCTA > 1:27989351/1‑68 TCGGATAACGTCTTCGTGGGGACGATTTATATCAACGAAGCGAAAGCGGCAATGGAAAGTGGCGCTAT < 1:17583529/68‑1 CGGATAACGTCTTCGTGGGGACGATTTATATCAACGAAGCGAAAGCGGCAATGGAAAGTGGCGCTATC < 1:884528/68‑1 CGGATAACGTCTTCGTGGGGACGATTTATATCAACGAAGCGAAAGCGGCAATGGAAAGTGGCGCTATC < 1:33506923/68‑1 CGGATAACGTCTTCGTGGGGACGATTTATATCAACGAAGCGAAAGCGGCAATGGAAAGTGGCGCTATC < 1:28759514/68‑1 CGGATAACGTCTTCGTGGGGACGATTTATATCAACGAAGCGAAAGCGGCAATGGAAAGTGGCGCTATC > 1:32644952/1‑68 CGGATAACGTCTTCGTGGGGACGATTTATATCAACGAAGCGAAAGCGGCAATGGAAAGTGGCGCTATC < 1:22406381/68‑1 CGGATAACGTCTTCGTGGGGACGATTTATATCAACGAAGCGAAAGCGGCAATGGAAAGTGGCGCTATC < 1:27304277/68‑1 GATAACGTCTTCGTGGGGACGATTTATATCAACGAAGCGAAAGCGGCAATGGAAAGTGGCGCTATCAC > 1:18376488/1‑68 ATAACGTCTTCGTGGGGACGATTTATATCAACGAAGCGAAAGCGGCAATGGAAAGTGGCGCTATCAC < 1:16786882/67‑1 AACGTCTTCGTGGGGACGATTTATATCAACGAAGCGAAAGCGGCAATGGAAAGTGGCGCTATCACTCA < 1:31519869/68‑1 AACGTCTTCGTGGGGACGATTTATATCAACGAAGCGAAAGCGGCAATGGAAAGTGGCGCTATCACTCA < 1:10397063/68‑1 AACGGCTTCGTGGGGACGATTTATATCAACGAAGCGAAAGCGGCAATGGAAAGTGGCGCTATCACTCA < 1:16443877/68‑1 CGTCTTCGTGGGGACGATTTATATCAACGAAGCGAAAGCGGCAATGGAAAGTGGCGCTATCACTCAGC < 1:4661939/68‑1 TCTTCGTGGGGACGATTTATATCAACGAAGCGAAAGCGGCAATGGAAAGTGGCGCTATCACTCAGCAA > 1:5169002/1‑68 TCTTCGTGGGGACGATTTATATCAACGAAGCGAAAGCGGCAATGGAAAGTGGCGCTATCACTCAGCAA > 1:22972460/1‑68 TCTTCGTGGGGACGATTTATATCAACGAAGCGAAAGCGGCAATGGAAAGTGGCGCTATCACTCAGCAA > 1:9339388/1‑68 CTTCGTGGGGACGATTTATATCAACGAAGCGAAAGCGGCAATGGAAAGTGGCGCTATCACTCAGCAAT < 1:97352/68‑1 CGTGGGGACGATTTATATCAACGAAGCGAAAGCGGCAATGGAAAGTGGCGCTATCACTCAGCAATGCA < 1:18109648/68‑1 CGTGGGGACGATTTATATCAACGAAGCGAAAGCGGCAATGGAAAGTGGCGCTATCACTCAGCAATGCA < 1:25236324/68‑1 CGTGGGGACGATTTATATCAACGAAGCGAAAGCGGCAATGGAAAGTGGCGCTATCACTCAGCAATGC > 1:20972047/1‑67 GTGGGGACGATTTATATCAACGAAGCGAAAGCGGCAATGGAAAGTGGCGCTATCACTCAGCAATGCA > 1:13167393/1‑67 TGGGGACGATTTATATCAACGAAGCGAAAGCGGCAATGGAAAGTGGCGCTATCACTCAGCAATGCAC > 1:32396447/1‑67 GGGGACGATTTATATCATCGAAGCGAAAGCGGCAATGGAAAGTGGCGCTATCACTCAGCAATGCACC > 1:28101840/1‑67 CGATTTATATCAACGAAGCGAAAGCGGCAATGGAAAGTGGCGCTATCACTCAGCAATGCACCCCAGCT < 1:22159286/68‑1 CGATTTATATCAACGAAGCGAAAGCGGCAATGGAAAGTGGCGCTATCACTCAGCAATGCACCCCAGCT < 1:26220038/68‑1 CGATTTATATCAACGAAGCGAAAGCGGCAATGGAAAGTGGCGCTATCACTCAGCAATGCACCCCAGCT < 1:24613972/68‑1 TTTATATCAACGAAGCGAAAGCGGCAATGGAAAGTGGCGCTATCACTCAGCAATGCACCCCAGCTGCT < 1:35216922/68‑1 TTTATATCAACGAAGCGAAAGCGGCAATGGAAAGTGGCGCTATCACTCAGCAATGCACCCCAGCTGC < 1:23351348/67‑1 TTTATATCAACGAAGCGAAAGCGGCAATGGAAAGTGGCGCTATCACTCAGCAATGCACCCCAGCTGC < 1:838890/67‑1 TTTATATCAACGAAGCGAAAGCGGCAATGGAAAGTGGCGCTATCACTCAGCAATGCACCCCAGCTGC < 1:18861562/67‑1 TTTATATCAACGAAGCGAAAGCGGCAATGGAAAGTGGCGCTATCACTCAGCAATGCACCCCAGCTGC < 1:28396292/67‑1 TTATATCAACGAAGCGAAAGCGGCAATGGAAAGTGGCGCTATCACTCAGCAATGCACCCCAGCTGCTT > 1:20850644/1‑68 TATCAACGAAGCGAAAGCGGCAATGGAAAGTGGCGCTATCACTCAGCAATGCACCCCAGCTGCTTAAC > 1:546577/1‑68 ATCAACGAAGCGAAAGCGGCAATGGAAAGTGGCGCTATCACTCAGCAATGGACCCCAGCTGCTTAACG > 1:34450733/1‑68 ATCAACGAAGCGAAAGCGGCAATGGAAAGTGGCGCTATCACTCAGCAATGCACCCCAGCTGCTTAACG > 1:17132048/1‑68 TCAACGAAGCGAAAGCGGCAATGGAAAGTGGCGCTATCACTCAGCAATGCACCCCCGCTGCTTAACG > 1:32890409/1‑67 TCAACGAAGCGAAAGCGGCAATGGAAAGTGGCGCTATCACTCAGCAATGCACCCCAGCTGCTTAACG > 1:9919028/1‑67 TCAACGAAGCGAAAGCGGCAATGGAAAGTGGCGCTATCACTCAGCAATGCACCCCAGCTGCTTAACG > 1:4518982/1‑67 TCAACGAAGCGAAAGCGGCAATGGAAAGTGGCGCTATCACTCAGCAATGCACCCCAGCTGCTTAACG > 1:7698607/1‑67 TCAACGAAGCGAAAGCGGCAATGGAAAGTGGCGCTATCACTCAGCAATGCACCCCAGCTGCTTAACG > 1:30679098/1‑67 TCAACGAAGCGAAAGCGGCAATGGAAAGTGGCGCTATCACTCAGCAATGCACCCCAGCTGCTTAACG > 1:36944264/1‑67 TCAACGAAGCGAAAGCGGCAATGGAAAGTGGCGCTATCACTCAGCAATGCACCCCAGCTGCTTAACG > 1:35558132/1‑67 TCAACGAAGCGAAAGCGGCAATGGAAAGTGGCGCTATCACTCAGCAATGCACCCCAGCTGCTTAACG > 1:9158427/1‑67 TCAACGAAGCGAAAGCGGCAATGGAAAGTGGCGCTATCACTCAGCAATGCACCCCAGCTGCTTAACG > 1:10207186/1‑67 TCAACGAAGCGAAAGCGGCAATGGAAAGTGGCGCTATCACTCAGCAATGCACCCCAGCTGCTTAACG > 1:20715039/1‑67 TCAACGAAGCGAAAGCGGCAATGGAAAGTGGCGCTATCACTCAGCAATGCACCCCAGCTGCTTAACG > 1:19192665/1‑67 TCAACGAAGCGAAAGCGGCAATGGAAAGTGGCGCTATCACTCAGCAATGCACCCCAGCTGCTTAACG > 1:1217015/1‑67 TCAACGAAGCGAAAGCGGCAATGGAAAGTGGCGCTATCACTCAGCAATGCACCCCAGCTGCTTAACG > 1:23849393/1‑67 TCAACGAAGCGAAAGCGGCAATGGAAAGTGGCGCTATCACTCAGCAATGCACCCCAGCTGCTTAACG > 1:19783030/1‑67 CAACGAAGCGAAAGCGGCAATGGAAAGTGGCGCTATCACTCAGCAATGCACCCCAGCTGCTTAACGGC < 1:35915906/68‑1 CAACGAAGCGAAAGCGGCAATGGAAAGTGGCGCTATCACTCAGCAATGCACCCCAGCTGCTTAACGGC < 1:11280157/68‑1 CAACGAAGCGAAAGCGGCAATGGAAAGTGGCGCTATCACTCAGCAATGCACCCCAGCTGCTTAACGGC < 1:23719034/68‑1 ACGAAGCGAAAGCGGCAATGGATAGTGGCGCTATCACTCAGCAATGCACCCCAGCTGCTTAACGGC > 1:11753483/1‑66 CGAAGCGAAAGCGGCAATGGAAAGTGGCGCTATCACTCAGCAATGCACCCCAGCTGCTTAACGGCTCT < 1:29119071/68‑1 GAAGCGAAAGCGGCAATGGAAAGTGGCGCTATCACTCAGCAATGCACCCCAGCTGCTTAACGGCTCTT > 1:7404185/1‑68 GAAGCGAAAGCGGCAATGGAAAGTGGCGCTATCACTCAGCAATGCACCCCAGCTGCTTAACGGCTCTT > 1:7451426/1‑68 GAAGCGAAAGCGGCAATGGAAAGTGGCGCTATCACTCAGCAATGCACCCCAGCTGCTTAACGGCTCTT < 1:5850019/68‑1 AGCGAAAGCGGCAATGGAAAGTGGCGCTATCACTCAGCAATGCACCCCAGCTGCTTAACGGCTCTTG < 1:25741669/67‑1 GAAAGCGGCAATGGAAAGTGGCGCTATCACTCAGCAATGCACCCCAGCTGCTTAACGGCTCTTGCGTA < 1:33224929/68‑1 GGCAATGGAAAGTGGCGCTATCACTCAGCAATGCACCCCAGCTGCTTAACGGCTCTTGCGTACCCAAC < 1:29821849/68‑1 GGCAATGGAAAGTGGCGCTATCACTCAGCAATGCACCCCAGCTGCTTAACGGCTCTTGCGTACCCAAC < 1:658877/68‑1 ccATGGAAAGTGGCGCTATCACTCAGCAATACACCCCAGCTGCTTAACGGCTCTTGCGTACCCAACC < 1:34739549/65‑1 CAATGGAAAGTGGCGCTATCACTCAGCAATGCACCCCAGCTGCTTAACGGCTCTTGCGTACCCAACC < 1:20332775/67‑1 CAATGGAAAGTGGCGCTATCACTCAGCAATGCACCCCAGCTGCTTAACGGCTCTTGCGTACCCAACC < 1:26792618/67‑1 GGAAAGTGGCGCTATCACTCAGCAATGCACCCCAGCTGCTTAACGGCTCTTGCGTACCCAACCCCAGG > 1:21276879/1‑68 AAAGTGGCGCTATCACTCAGCAATGCACCCCAGCTGCTTAACGGCTCTTGCGTACCCAACCCCAGGAA > 1:21647443/1‑68 AAAGTGGCGCTATCACTCAGCAATGCACCCCAGCTGCTTAACGGCTCTTGCGTACCCAACCCCAGGAA > 1:36596387/1‑68 AAAGTGGCGCTATCACTCAGCAATGCACCCCAGCTGCTTAACGGCTCTTGCGTACCCAACCCCAGGAA > 1:14485595/1‑68 AAGTGGCGCTATCACTCAGCAATGCACCCCAGCTGCTTAACGGCTCTTGCGTACCCAACCCCAGGAA < 1:27130979/67‑1 AGTGGCGCTATCACTCAGCAATGCACCCCAGCTGCTTAACGGCTCTTGCGTACCCAACCCCAGGAAGC < 1:29379524/68‑1 AGTGGCGCTATCACTCAGCAATGCACCCCAGCTGCTTAACGGCTCTTGCGTACCCAACCCCAGGAAGC < 1:1103412/68‑1 AGTGGCGCTATCACTCAGCAATGCACCCCAGCTGCTTAACGGCTCTTGCGTACCCAACCCCAGGAAGC < 1:27795957/68‑1 GTGGCGCTATCACTCAGCAATGCACCCCAGCTGCTTAACGGCTCTTGCGTACCCAACCCCAGGAAGCT > 1:11349937/1‑68 GTGGCGCTATCACTCAGCAATGCACCCCAGCTGCTTAACGGCTCTTGCGTACCCAACCCCAGGAAGCT > 1:2635002/1‑68 GTGGCGCTATCACTCAGCAATGCACCCCAGCTGCTTAACGGCTCTTGCGTACCCAACCCCAGGAAGCT > 1:14612961/1‑68 GGCGCTATCACTCAGCAATGCACCCCAGCTGCTTAACGGCTCTTGCGTACCCAACCCCAGGAAGCTAA > 1:15726023/1‑68 GCGCTATCACTCAGCAATGCACCCCAGCTGCTTAACGGCTCTTGCGTACCCAACCCCAGGAAGCTAAG > 1:35007285/1‑68 CGCTATCACTCAGCAATGCACCCCAGCTGCTTAACGGCTCTTGCGTACCCAACCCCAGGAAGCTAAG < 1:3749247/67‑1 GCTATCACTCAGCAATGCACCCCAGCTGCTTAACGGCTCTTGCGTACCCAACCCCAGGAAGCTAAGGA < 1:635396/68‑1 TCACTCAGCAATGCACCCCAGCTGCTTAACGGCTCTTGCGTACCCAACCCCAGGAAGCTAAGGAAAGA < 1:10497541/68‑1 TCACTCAGCAATGCACCCCAGCTGCTTAACGGCTCTTGCGTACCCAACCCCAGGAAGCTAAGGAAAGA < 1:24932890/68‑1 TCACTCAGCAATGCACCCCAGCTGCTTAACGGCTCTTGCGTACCCAACCCCAGGAAGCTAAGGAAAGA < 1:6963345/68‑1 TCACTCAGCAATGCACCCCAGCTGCTTAACGGCTCTTGCGTACCCAACCCCAGGAAGCTAAGGAAAGA < 1:22522380/68‑1 TCACTCAGCAATGCACCCCAGCTGCTTAACGGCTCTTGCGTACCCAACCCCAGGAAGCTAAGGAAAGA < 1:21874929/68‑1 CACTCAGCAATGCACCCCAGCTGCTTAACGGCTCTTGCGTACCCAACCCCAGGAAGCTAAGGAAAGAT < 1:33787037/68‑1 CACTCAGCAATGCACCCCAGCTGCTTAACGGCTCTTGCGTACCCAACCCCAGGAAGCTAAGGAAAGAT < 1:10766114/68‑1 CACTCAGCAATGCACCCCAGCTGCTTAACGGCTCTTGCGTACCCAACCCCAGGAAGCTAAGGAAAGAT < 1:9024499/68‑1 CACTCAGCAATGCACCCCAGCTGCTTAACGGCTCTTGCGTACCCAACCCCAGGAAGCTAAGGAAAGAT < 1:12541176/68‑1 CACTCAGCAATGCACCCCAGCTGCTTAACGGCTCTTGCGTACCCAACCCCAGGAAGCTAAGGAAAGAT < 1:13490463/68‑1 CACTCAGCAAAGCACCCCAGCTGCTTAACGGCTCTTGCGTACCCAACCCCAGGAAGCTAAGGAAAGAT < 1:17433985/68‑1 ACTCAGCAATGCACCCCAGCTGCTTAACGGCTCTTGCGTACCCAACCCCAGGAAGCTAAGGAAAGAT > 1:30937145/1‑67 ACTCAGCAATGCACCCCAGCTGCTTAACGGCTCTTGCGTACCCAACCCCAGGAAGCTAAGGAAAGAT > 1:4136706/1‑67 ACTCAGCAATGCACCCCAGCTGCTTAACGGCTCTTGCGTACCCAACCCCAGGAAGCTAAGGAAAGAT > 1:15136218/1‑67 ACTCAGCAATGCACCCCAGCTGCTTAACGGCTCTTGCGTACCCAACCCCAGGAAGCTAAGGAAAGAT > 1:24202177/1‑67 ACTCAGCAATGCACCCCAGCTGCTTAACGGCTCTTGCGTACCCAACCCCAGGAAGCTAAGGAAAGAT > 1:14109058/1‑67 TTCGGATAACGTCTTCGTGGGGACGATTTATATCAACGAAGCGAAAGCGGCAATGGAAAGTGGCGCTATCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/1228968‑1228897‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcacTCAGCAATGCACCCCAGCTGCTTAACGGCTCTTGCGTACCCAACCCCAGGAAGCTAAGGAAAGATTC < CP009273/1298865‑1298799 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |