| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 1228897 = | 407 (0.910) | 241 (0.590) | 55/102 | NT | 40.8% | coding (1277/1542 nt) | nhaB | sodium:proton antiporter |
| ? | CP009273 | = 1298865 | 329 (0.810) | coding (775/909 nt) | oppC | oligopeptide transporter subunit | |||||
Only 100 of 904 total aligned reads displayed.
GTAGCGACGGAGGGCAGATTGGTACCGGTATTAATGGCGACCGCCAGCAGCTCGTATTGCTTCAACGTGATAGCGCCACTTTCCATTGCCGCTTTCGCTTCGTTGATATAAATCGTCCCCACGAAGACGTTATC > CP009273/1228831‑1228964 | tgttgttggggattgttccgcatggcaccgtggctggtacgggttttacgccagaccggcaTCAACGt > 1:36638326‑M1/62‑68 (MQ=255)tgttgttggggattgttccgcatggcaccgtggctggtacgggttttacgccagaccggcaTCAACGt > 1:28528350‑M1/62‑68 (MQ=255) gttgttggggattgttccgcatggcaccgtggctggtacgggttttacgccagaccggcaTCAACGTg < 1:10243868‑M1/8‑1 (MQ=255) ttgttggggattgttccgaatggcacagtggatcgtacgggttttaagccagaccggcaTCAACGTGa < 1:7135900‑M1/9‑1 (MQ=255) tctttccttagcttcctggggttgggtacgcaagagccgttaagcagctggggtgcattgctgaGTGa < 1:10497541‑M1/4‑1 (MQ=255) tctttccttagcttcctggggttgggtacgcaagagccgttaagcagctggggtgcattgctgaGTGa < 1:440073‑M1/4‑1 (MQ=255) tctttccttagcttcctggggttgggtacgcaagagccgttaagcagctggggtgcattgctgaGTGa < 1:12715227‑M1/4‑1 (MQ=255) tctttccttagcttcctggggttgggtacgcaagagccgttaagcagctggggtgcattgctgaGTGa < 1:25015684‑M1/4‑1 (MQ=255) tctttccttagcttcctggggttgggtacgcaagagccgttaagcagctggggtgcattgctgaGTGa < 1:21250980‑M1/4‑1 (MQ=255) aGCGACGGAGGGCAGATTGGTACCGGTATTAATGGCGACCGCCAGCAGCTCGTATTGCTTCAACGTg < 1:6095800/67‑1 (MQ=255) tgttggggattgttccgcatggcaccgtggctggtacgggttttacgccagaccggcaTCAACGTGa > 1:2760704‑M1/59‑67 (MQ=255) tgttggggattgttccgcatggcaccgtggctggtacgggttttacgccagaccggcaTCAACGTGa > 1:7496102‑M1/59‑67 (MQ=255) tgttggggattgttccgcatggcaccgtggctggtacgggttttacgccagaccggcaTCAACGTGa > 1:15521934‑M1/59‑67 (MQ=255) gACGGAGGGCAGATTGGTACCGGTATTAATGGCGACCGCCAGCAGCTCGTATTGCTTCAACGTGATa > 1:666997/1‑67 (MQ=255) gACGGAGGGCAGATTGGTACCGGTATTAATGGCGACCGCCAGCAGCTCGTATTGCTTCAACGTGATa < 1:4029306/67‑1 (MQ=255) gACGGAGGGCAGATTGGTACCGGTATTAATGGCGACCGCCAGCAGCTCGTATTGCTTCAACGTGATa > 1:20526045/1‑67 (MQ=255) tccttagcttcctggggttgggtacgcaagagccgttaagcagctggggtgcattgctgaGTGATAgc < 1:30843992‑M1/8‑1 (MQ=255) cttagcttcctggggttgggtacgcaagagccgttaagcagctggggtgcattgctgaGTGATAgcg < 1:3749247‑M1/9‑1 (MQ=255) aGGGCAGATTGGTACCGGTATTAATGGCGACCGCCAGCAGCTCGTATTGCTTCAACGTGATAGCGcc > 1:2344189/1‑67 (MQ=255) agcttcctggggttgggtacgcaagagccgttaagcagctggggtgcattgctgaGTGATAGCGCCAc > 1:14612961‑M1/56‑68 (MQ=255) agcttcctggggttgggtacgcaagagccgttaagcagctggggtgcattgctgaGTGATAGCGCCAc > 1:30343839‑M1/56‑68 (MQ=255) gCAGATTGGTACCGGTATTAATGGCGACCGCCAGCAGCTCGTATTGCTTCAACGTGATAGCGCCAc < 1:10050291/66‑1 (MQ=255) gCAGATTGGTACCGGTATTAATGGCGACCGCCAGCAGCGCGTATTGCTTCAACGTGATAGCGCCAc < 1:22047883/66‑1 (MQ=255) ttcctggggttgggtacgcaagagccgttaagcagctggggtgcattgctgaGTGATAGCGCCACttt > 1:2721155‑M1/53‑68 (MQ=255) ttcctggggttgggtacgcaagagccgttaagcagctggggtgcattgctgaGTGATAGCGCCACttt > 1:21647443‑M1/53‑68 (MQ=255) tgcctggggttgggtacgcaagagccgttaagcagctggggtgcattgctgaGTGATAGCGCCACt > 1:18492272‑M1/53‑66 (MQ=255) cAGATTGGTACCGGTATTAATGGCGACCGCCAGCAGCTCGTATTGCTTCAACGTGATAGCGCCACtt < 1:27026632/67‑1 (MQ=255) aGATTGGTACCGGTATTAATGGCGACCGCCAGCAGCTCGTATTGCTTCAACGTGATAGCGCCACttt < 1:35679616/67‑1 (MQ=255) aGATTGGTACCGGTATTAATGGCGACCGCCAGCAGCTCGTATTGCTTCAACGTGATAGCGCCACttt < 1:26172930/67‑1 (MQ=255) aGATTGGTACCGGTATTAATGGCGACCGCCAGCAGCTCGTATTGCTTCAACGTGATAGCGCCACttt < 1:16933581/67‑1 (MQ=255) ggggttgggtacgcaagagccgttaagcagctggggtgcattgctgaGTGATAGCGCCACTTTCCAtt < 1:34646928‑M1/21‑1 (MQ=255) ggttgggtacgcaagagccgttaagcagctggggtgcattgctgaGTGATAGCGCCACTTTCCATTg < 1:20332775‑M1/22‑1 (MQ=255) ggttgggtacgcaagagccgttaagcagctggggtgcattgctgaGTGATAGCGCCACTTTCCATTg < 1:1085155‑M1/22‑1 (MQ=255) tACCGGTATTAATGGCGACCGCCAGCAGCTCGTATTGCTTCAACGTGATAGCGCCACTTTCCATTGcc > 1:8085075/1‑68 (MQ=255) gttgggtacgcaagagccgttaagcagctggggtgcattgctgaGTGATAGCGCCACTTTCCATTGcc < 1:36474631‑M1/24‑1 (MQ=255) gttgggtacgcaagagccgttaagcagctggggtgcattgctgaGTGATAGCGCCACTTTCCATTGcc < 1:28205810‑M1/24‑1 (MQ=255) aCCGGTATTAATGGCGACCGCCAGCAGCTCGTATTGCTTCAACGTGATAGCGCCACTTTCCATTGcc > 1:15090359/1‑67 (MQ=255) aCCGGTATTAATGGCGACCGCCAGCAGCTCGTATTGCTTCAACGTGATAGCGCCACTTTCCATTGcc > 1:31559453/1‑67 (MQ=255) aCCGGTATTAATGGCGACCGCCAGCAGCTCGTATTGCTTCAACGTGATAGCGCCACTTTCCATTGcc > 1:28864442/1‑67 (MQ=255) gTATTAATGGCGACCGCCAGCAGCTCGTATTGCTTCAACGTGATAGCGCCACTTTCCATTGCCGCtt > 1:19012947/1‑67 (MQ=255) tacgcaagagccgttaagcagctggggtgcattgctgaGTGATAGCGCCACTTTCCATTGCCGCTTTc < 1:33224929‑M1/30‑1 (MQ=255) tATTAATGGCGACCGCCAGCAGCTCGTATTGCTTCAACGTGATAGCGCCACTTTCCATTGCCGCTTTc > 1:11362678/1‑68 (MQ=255) tATTAATGGCGACCGCCAGCAGCTCGTATTGCTTCAACGTGATAGCGCCACTTTCCATTGCCGCTTTc > 1:31951056/1‑68 (MQ=255) tATTAATGGCGACCGCCAGCAGCTCGTATTGCTTCAACGTGATAGCGCCACTTTCCATTGCCGCTTTc > 1:35188376/1‑68 (MQ=255) caagagccgttaagcagctggggtgcattgctgaGTGATAGCGCCACTTTCCATTGCCGCTTTCGCt < 1:25741669‑M1/33‑1 (MQ=255) aagagccgttaagcagctggggtgcattgctgaGTGATAGCGCCACTTTCCATTGCCGCTTTCGCTTc < 1:27920410‑M1/35‑1 (MQ=255) aTGGCGACCGCCAGCAGCTCGTATTGCTTCAACGTGATAGCGCCACTTTCCATTGCCGCTTTCGCTTc > 1:17574857/1‑68 (MQ=255) tGGCGACCGCCAGCAGCTCGTATTGCTTCAACGTGATAGCGCCACTTTCCATTGCCGCTTTCGCTTCg > 1:29670769/1‑68 (MQ=255) tGGCGACCGCCAGCAGCTCGTATTGCTTCAACGTGATAGCGCCACTTTCCATTGCCGCTTTCGCTTCg > 1:1397862/1‑68 (MQ=255) tGGCGACCGCCAGCAGCTCGTATTGCTTCAACGTGATAGCGCCACTTTCCATTGCCGCTTTCGCTTCg > 1:17217863/1‑68 (MQ=255) tGGCGACCGCCAGCAGCACGTATTGCTTCAACGTGATAGCGCCACTTTCCATTGCCGCTTTCGCTTCg > 1:7324306/1‑68 (MQ=255) agagccgttaagcagctggggtgcattgctgaGTGATAGCGCCACTTTCCATTGCCGCTTTCGCTTCg > 1:9099129‑M1/33‑68 (MQ=255) ggCGACCGCCAGCAGCTCGTATTGCTTCAAGGTGATAGCGCCACTTTCCATTGCCGCTTTCGCTTCGt > 1:19668952/1‑68 (MQ=255) ggCGACCGCCAGCAGCTCGTATTGCTTCAACGTGATAGCGCCACTTTCCATTGCCGCTTTCGCTTCGt > 1:35405690/1‑68 (MQ=255) ggCGACCGCCAGCAGCTCGTATTGCTTCAACGTGATAGCGCCACTTTCCATTGCCGCTTTCGCTTCGt < 1:12211975/68‑1 (MQ=255) gccgttaagcagctggggtgcattgctgaGTGATAGCGCCACTTTCCATTGCCGCTTTCGCTTCGtt > 1:24324840‑M1/30‑67 (MQ=255) gACCGCCAGCAGCTCGTATTGCTTCAACGTGATAGCGCCACTTTCCATTGCCGCTTTCGCTTCGTTGa < 1:3118529/68‑1 (MQ=255) gACCGCCAGCAGCTCGTATTGCTTCAACGTGATAGCGCCACTTTCCATTGCCGCTTTCGCTTCGTTGa < 1:26629251/68‑1 (MQ=255) gACCGCCAGCAGCTCGTATTGCTTCAACGTGATAGCGCCACTTTCCATTGCCGCTTTCGCTTCGTTGa < 1:2220894/68‑1 (MQ=255) gACCGCCAGCAGCTCGTATTGCTTCAACGTGATAGCGCCACTTTCCATTGCCGCTTTCGCTTCGTTGa < 1:33854896/68‑1 (MQ=255) gACCGCCAGCAGCTCGTATTGCTTCAACGTGATAGCGCCACTTTCCATTGCCGCTTTCGCTTCGTTGa < 1:1209309/68‑1 (MQ=255) gACCGCCAGCAGCTCGTATTGCTTCAACGTGATAGCGCCACTTTCCATTGCCGCTTTCGCTTCGTTGa < 1:32666139/68‑1 (MQ=255) gACCGCCAGCAGCTCGTATTGCTTCAACGTGATAGCGCCACTTTCCATTGCCGCTTTCGCTTCGTTGa < 1:23961499/68‑1 (MQ=255) gACCGCCAGCAGCTCGTATTGCTTCAACGTGATAGCGCCACTTTCCATTGCCGCTTTCGCTTCGTTGa < 1:14256387/68‑1 (MQ=255) gACCGCCAGCAGCTCGTATTGCTTCAACGTGATAGCGCCACTTTCCATTGCCGCTTTCGCTTCGTTGa < 1:7662163/68‑1 (MQ=255) gACCGCCAGCAGCTCGTATTGCTTCAACGTGATAGCGCCACTTTCCATTGCCGCTTTCGCTTCGTTGa < 1:26429101/68‑1 (MQ=255) gACCGCCAGCAGCTCGTATTGCTTCAACGTGATAGCGCCAATTTCCATTGCCGCTTTCGCTTCGTTGa < 1:34250558/68‑1 (MQ=255) cgttaagcagctggggtgcattgctgaGTGATAGCGCCACTTTCCATTGCCGCTTTCGCTTCGTTGa > 1:15844548‑M1/28‑67 (MQ=255) cgttaagcagctggggtgcattgctgaGAGATAGCGCCACTTTCCATTGCCGCTTTCGCTTCGTAGat < 1:33019815‑M1/41‑1 (MQ=255) aCCGCCAGCAGCTCGTATTGCTTCAACGTGATAGCGCCACTTTCCATTGCCGATTTCGCTTCGTTGat > 1:23212467/1‑68 (MQ=255) ccGCCAGCAGCTCGTATTGCTTCAACGTGATAGCGCCACTTTCCATTGCCGCTTTCGCTTCGTTGat < 1:36887321/67‑1 (MQ=255) ccAGCAGCTCGTATTGCTTCAACGTGATAGCGCCACTTTCCATTGCCGCTTTCGCTTCGTTGATATaa > 1:33514746/1‑68 (MQ=255) aagcagctggggtgcattgctgaGTGATAGCGCCACTTTCCATTGCCGCTTTCGCTTCGTTGATATaa > 1:20850644‑M1/24‑68 (MQ=255) cagcTCGTATTGCTTCAACGTGATAGCGCCACTTTCCATTGCCGCTTTCGCTTCGTTGATATAAATCg > 1:9603267/1‑68 (MQ=255) tggggtgcattgctgaGTGATAGCGCCACTTTCCATTGCCGCTTTCGCTTCGTTGATATAAATCg > 1:9881594‑M1/17‑65 (MQ=255) tggTATTGCTTCAACGTGATAGCGCCACTTTCCATTGCCGCTTTCGCTTCGTTGATATAAATCGTc < 1:13559738/64‑1 (MQ=255) cGTATTGCTTCAACGTGATAGCGCCACTTTCCATTGCCGCTTTCGCTTCGTTGATATAAATCGTcccc < 1:25492869/68‑1 (MQ=255) cGTATTGCTTCAACGTGATAGCGCCACTTTCCATTGCCGCTTTCGCTTCGTTGATATAAATCGTcccc < 1:16590246/68‑1 (MQ=255) ggtgcattgctgaGTGATAGCGCCACTTTCCATTGCCGCTTTCGCTTCGTTGATATAAATCGTcccc < 1:23722690‑M1/54‑1 (MQ=255) ggtgcattgctgaGTGATAGCGCCACTTTCCATTGCCGCTTTCGCTTCGTTGATATAAATCGTcccc < 1:11153240‑M1/54‑1 (MQ=255) gTATTGCTTCAACGTGATAGCGCCACTTTCCATTGCCGCTTTCGCTTCGTTGATATAAATCGTCCCCa < 1:11735388/68‑1 (MQ=255) gTATTGCTTCAACGTGATAGCGCCACTTTCCATTGCCGCTTTCGCTTCGTTGATATAAATCGTCCCCa < 1:13107850/68‑1 (MQ=255) gtgcattgctgaGTGATAGCGCCACTTTCCATTGCCGCTTTCGCTTCGTTGATATAAATCGTCCCCa > 1:4646894‑M1/13‑67 (MQ=255) gtgcattgctgaGTGATAGCGCCACTTTCCATTGCCGCTTTCGCTTCGTTGATATAAATCGTCCCCa > 1:29217137‑M1/13‑67 (MQ=255) tgcattgctgaGTGATAGCGCCACTTTCCATTGCCGCTTTCGCTTCGTTGATATAAATCGTCCCCACg < 1:18109648‑M1/57‑1 (MQ=255) agtGCTTCAACGTGATAGCGCCACTTTCCATTGCCGCTTTCGCTTCGTTGATATGAATGGTCCCCACg > 1:36146227/3‑68 (MQ=255) aTTGCTTCAACGTGAAAGCGCCACTTTCCATTGCCGCTTTCGGTTCGTTGATATAAATCGTCCCCAc < 1:34916057/67‑1 (MQ=255) cTTCAACGTGATAGCGCCACTTTCCATTGCCGCTTTCGCTTCGTTGATATAAATCGTCCCCACGAAg > 1:19915964/1‑67 (MQ=255) ttCAACGTGATAGCGCCACTTTCCATTGCCGCTTTCGCTTCGTTGATATAAATCGTCCCCACGAAGa < 1:2275545/67‑1 (MQ=255) gctgaGTGATAGCGCCACTTTCCATTGCCGCTTTCGCTTCGTTGATATAAATCGTCCCCACGAAGACg < 1:6479023‑M1/63‑1 (MQ=255) gctgaGTGATAGCGCCACTTTCCATTGCCGCTTTCGCTTCGTTGATATAAATCGTCCCCACGAAGACg < 1:22440309‑M1/63‑1 (MQ=255) tgaGTGATAGCGCCACTTTCCATTGCCGCTTTCGCTTCGTTGATATAAATCGTCCCCACGAAGACGtt < 1:4944154‑M1/65‑1 (MQ=255) ACGTGATAGCGCCACTTTCCATTGCCGCTTTCGCTTCGTTGATATAAATCGTCCCCACGAAGACGTTa > 1:5245709‑M1/1‑68 (MQ=255) CGTGATAGCGCCACTTTCCATTGCCGCTTTCGCTTCGTTGATATAAATCGTCCCCACGAAGCCGTTAt > 1:29896150‑M1/1‑68 (MQ=255) CGTGATAGCGCCACTTTCCATTGCCGCTTTCGCTTCGTTGATATAAATCGTCCCCACGAAGACGTTa < 1:9307308‑M1/67‑1 (MQ=255) CGTGATAGCGCCACTTTCCATTGCCGCTTTCGCTTCGTTGATATAAATCGTCCCCACGAAGACGTTAt > 1:5612515‑M1/1‑68 (MQ=255) GTGATAGCGCCACTTTCCATTGCCGCTTTCGCTTCGTTGATATAAATCGTCCCCACGAAGACGTTAt > 1:32417857‑M1/1‑67 (MQ=255) GTGATAGCGCCACTTTCCATTGCCGCTTTCGCTTCGTTGATATAAATCGTCCCCACGAAGACGTTAt < 1:24803453‑M1/67‑1 (MQ=255) GTGATAGCGCCACTTTCCATTGCCGCTTTCGCTTCGTTGATATAAATCGTCCCCACGAAGACGTTAt < 1:8510503‑M1/67‑1 (MQ=255) GTGATAGCGCCACTTTCCATTGCCGCTTTCGCTTCGTTGATATAAATCGTCCCCACGAAGACGTTAt < 1:8936115‑M1/67‑1 (MQ=255) | GTAGCGACGGAGGGCAGATTGGTACCGGTATTAATGGCGACCGCCAGCAGCTCGTATTGCTTCAACGTGATAGCGCCACTTTCCATTGCCGCTTTCGCTTCGTTGATATAAATCGTCCCCACGAAGACGTTATC > CP009273/1228831‑1228964 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |