| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 1424533 = | 229 (0.510) | 18 (0.050) | 9/94 | NT | 5.9% | coding (1228/3363 nt) | stfR | Rac prophage; putative tail fiber protein |
| ? | CP009273 | 1424679 = | 380 (1.020) | coding (1374/3363 nt) | stfR | Rac prophage; putative tail fiber protein | |||||
CGTACTTTTGCTCTGAGCTGCCGCCGTCGCACTGCCAGCAGCCTCTGTCGCCTTCGTGGATGCCGTCGTGGCGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/1424607‑1424533‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgtggcgctTGAGGATGCAAGTACGACGAAAAAGGGGATAGTACAGCTCAGCAGTGCGACCAACAGTACGTCTGAA > CP009273/1424679‑1424745 CGTACTTTTGCTCTGAGCTGCCGCCGTCGCACTGCCAGCAGCCTCTGTCGCCTTCGTGGATGCCGTC < 1:34878771/67‑1CGTACTTTTGCTCTGAGCTGCCGCCGTCGCACTGCCAGCAGCCTCTGTCGCCTTCGTGGATGCCGTC < 1:14166971/67‑1CGTACTTTTGCTCTGAGCTGCCGCCGTCGCACTGCCAGCAGCCTCTGTCGCCTTCGTGGATGCCGTC < 1:14146061/67‑1CGTACTTTTGCTCTGAGCTGCCGCCGTCGCACTGCCAGCAGCCTCTGTCGCCTTCGTGGATGCCGTC < 1:18806514/67‑1CGTACTTTTGCTCTGAGCTGCCGCCGTCGCACTGCCAGCAGCCTCTGTCGCCTTCGTGGATGCCGTC < 1:13684965/67‑1CGTACTTTTGCTCTGAGCTGCCGCCGTCGCACCGCCAGCAGCCTCTGTCGCCTTCGTGGATGCCGTC < 1:19861797/67‑1 GTACTTTTGCTCTGAGCTGCCGCCGTCGCACTGCCAGCAGCCTCTGTCGCCTTCGTGGATGCCGTCGT < 1:4416430/68‑1 CTTTTGCTCTGCGCTGCCGCCGTCGCACTGCCAGCAGCCTCTGTTGCCTTCGTGGATGCCGTCGTGGC < 1:2712646/68‑1 CTTTTGCTCTGAGCTGCCGCCGTCGCACTGCGAGCAGCCTCTGTCGCCTTCGTGGATGCCGTCGTGGC < 1:10157845/68‑1 CTTTTGCTCTGAGCTGCCGCCGTCGCACTGCCAGCAGCCTCTGTCGCCTTCGTGGATGCCGTCGTGGC < 1:21179878/68‑1 CTTTTGCTCTGAGCTGCCGCCGTCGCACTGCCAGCAGCCTCTGTCGCCTTCGTGGATGCCGTCGTGGC < 1:30014649/68‑1 CTTTTGCTCTGAGCTGCCGCCGTCGCACTGCCAGCAGCCTCTGTCGCCTTCGTGGATGCCGTCGTGGC < 1:26754876/68‑1 CTTTTGCTCTGAGCTGCCGCCGTCGCACTGCCAGCAGCCTCTGTCGCCTTCGTGGATGCCGTCGTGGC < 1:19627232/68‑1 CTTTTGCTCTGAGCTGCCGCCGTCGCACTGCCAGCAGCCTCTGTCGCCTTCGTGGATGCCGTCGTGGC < 1:26967655/68‑1 CTTTTGCTCTGAGCTGCCGCCGTCGCACTGCCAGCAGCCTCTGTCGCCTTCGTGGATGCCGTCGTGGC < 1:21506431/68‑1 CTTTTGCTCTGAGCTGCCGCCGTCGCACTGCCAGCAGCCTCTGTCGCCTTCGTGGATGCCGTCGTGGC < 1:26955832/68‑1 CTTTTGCTCTGAGCTGCCGCCGTCGCACTGCCAGCAGCCTCTGTCGCCTTCGTGGATGCCGTCGTGGC < 1:26326417/68‑1 CTTTTGCTCTGAGCTGCCGCCGTCGCACTGCCAGCAGCCTCTGTCGCCTTCGTGGATGCCGTCGTGGC < 1:33060944/68‑1 CTTTTGCTCTGAGCTGCCGCCGTCGCACTGCCAGCAGCCTCTGTCGCCTTCGTGGATGCCGTCGTGGC < 1:18730597/68‑1 CTTTTGCTCTGAGCTGCCGCCGTCGCACTGCCAGCAGCCTCTGTCGCCTTCGTGGATGCCGTCGTGGC < 1:18500688/68‑1 CTTTTGCTCTGAGCTGCCGCCGTCGCACTGCCAGCAGCCTCTGTCGCCTTCGTGGATGCCGTCGTGGC < 1:18401891/68‑1 CTTTTGCTCTGAGCTGCCGCCGTCGCACTGCCAGCAGCCTCTGTCGCCTTCGTGGATGCCGTCGTGGC < 1:17860687/68‑1 CTTTTGCTCTGAGCTGCCGCCGTCGCACTGCCAGCAGCCTCTGTCGCCTTCGTGGATGCCGTCGTGGC < 1:23645645/68‑1 CTTTTGCTCTGAGCTGCCGCCGTCGCACTGCCAGCAGCCTCTGTCGCCTTCGTGGATGCCGTCGTGGC < 1:10667877/68‑1 CTTTTGCTCTGAGCTGCCGCCGTCGCACTGCCAGCAGCCTCTGTCGCCTTCGTGGATGCCGTCGTGGC < 1:36533520/68‑1 CTTTTGCTCTGAGCTGCCGCCGTCGCACTGCCAGCAGCCTCTGTCGCCTTCGTGGATGCCGTCGTGGC < 1:3740905/68‑1 CTTTTGCTCTGAGCTGCCGCCGTCGCACTGCCAGCAGCCTCTGTCGCCTTCGTGGATGCCGTCGTGGC < 1:14358434/68‑1 CTTTTGCTCTGAGCTGCCGCCGTCGCACTGCCAGCAGCCTCTGTCGCCTTCGTGGATGCCGTCGTGGC < 1:6398574/68‑1 CTTTTGCTCTGAGCTGCCGCCGTCGCACTGCCAGCAGCCTCTGTCGCCTTCGTGGATGCCGGCGTGGC < 1:33427968/68‑1 TTTTGCTCTGAGCTGCCGCCGTCGCACTGCCAGCAGCCTCTGTCGCCTTCGTGGATGCCGTCGTGGCG < 1:17559812/68‑1 TTTTGCTCTGAGCTGCCGCCGTCGCACTGCCAGCAGCCTCTGTCGCCTTCGTGGATGCCGTCGTGGCG < 1:12093295/68‑1 TTTTGCTCTGAGCTGCCGCCGTCGCACTGCCAGCAGCCTCTGTCGCCTTCGTGGATGCCGTCGTGGCG < 1:13507099/68‑1 TTTTCTCTGAGCTGCCGCCGTCGCACTGCCAGCAGCCTCTGTCGCCTTCGTGGATGCCGTCGTGGCGC < 1:13799732/68‑1 TTGCTCTGAGCTGCCGCCGTCGCACTGCCAGCAGCCTCTGTCGCCTTCGTGGATGCCGTCGTGGCGCT < 1:17104495/68‑1 TTGCTCTGAGCTGCCGCCGTCGCACTGCCAGCAGCCTCTGTCGCCTTCGTGGATGCCGTCGTGGCGCT < 1:28487359/68‑1 TTGCTCTGAGCTGCCGCCGTCGCACTGCCAGCAGCCTCTGTCGCCTTCGTGGATGCCGTCGTGGCGCT < 1:29360826/68‑1 TTGCTCTGAGCTGCCGCCGTCGCACTGCCAGCAGCCTCTGTCGCCTTCGTGGATGCCGTCGTGGCGCT < 1:6680117/68‑1 TTGCTCTGAGCTGCCGCCGTCGCACTGCCAGCAGCCTCTGTCGCCTTCGTGGATGCCGTCGTGGCGCT < 1:15378539/68‑1 TTGCTCTGAGCTGCCGCCGTCGCACTGCCAGCAGCCTCTGTCGCCATCGTGGATGCCGTCGTGGCGCT < 1:36428984/68‑1 TTGCTCCGAGCTGCCGCCGTCGCACTGCCAGCAGCCTCTGTCGCCTTCGTGGATGCCGTCGTGGCGCT < 1:26779353/68‑1 TGCTCTGAGCTGCCGCCGTCGCACTGCCAGCAGCCTCTGTCGCCTTCGTGGATGCCGTCGTGGCGCTT < 1:10354757/68‑1 ggtGCTGCCGCCGTCGCACTGCCACCAGCCGCTGTCGCCTTCGTGGATGCCGGCGTGGCGCTTGAGG < 1:29411445/64‑1 TGAGCTGCCGCCGGCGCACTGCCAGCAGCCTCTGTCGCCTTCGTGGATGCCGGCGTGGCGCTTGAGG < 1:857417/67‑1 cAGCTGCCGCCGTCGCACTGCCCGCAGCCTCGGTCGCCTTCGGGGATGCCGTCGTGGCGCTTGAGGAT < 1:21547832/67‑1 GAGCTGCCGCCGTCGCACTGCCAGCAGCCTCTGTCGCCTTCGTGGATGCCGTCGTGGCGCTTGAGGAT < 1:19278999/68‑1 GAGCTGCCGCCGTCGCACTGCCAGCAGCCTCTGTCGCCTTCGTGGATGCCGTCGTGGCGCTTGAGGAT < 1:13305761/68‑1 GAGCTGCCGCCGTCGCACTGCCAGCAGCCTCTGTCGCCTTCGTGGATGCCGTCGTGGCGCTTGAGGAT < 1:11545689/68‑1 GAGCTGCCGCCGGCGCACTGCCAGCAGCCTCTGTCGCCTTCGTGGATGCCGTCGTGGCGCTTGAGGAT < 1:28789180/68‑1 GCTGCCGCCGTCGCACTGCCAGCAGCCTCTGTCGCCTTCGTGGATGCCGGCGTGGCGCTTGAGGATG < 1:28382726/67‑1 GCTGCCGCCGTCGCACTGCCAGCAGCCTCTGTCGCCTTCGTGGAGGCCGTCGGGGCGCTTGAGGATG < 1:34254/67‑1 GCTGCCGCCGTCGCACTGCCAGCAGCCTCTGTCGCCTTCGTGCATGCCGGCGTGGCGCTTGAGGATG < 1:20436393/67‑1 TGCCGCCGTCGCCCTGCCAGCAGCCTCTGTCGCCTTCGTGGATGCCGTCGTGGCGCTTGAGGATG < 1:13959370/65‑1 TGCCGCCGTCCCACTGCCAGCAGCCTCTGTCGCCTTCGGGGATGCCGTCGTGGCGCTTGAGGATGCA < 1:9439397/67‑1 AGCAGCCTCTGTCGCCTTCGTGGATGCCGTCGTGGCGCTTGAGGATGCAAGTACGACGAAAAAGGGGA > 1:14711686/1‑68 GCCTCTGTCGCCTTCGTGGATGCCGTCGTGGCGCTTGAGGATGCAAGTACGACGAAAAAGGGGATAGT > 1:4582459/1‑68 TCGCCTTCGTGGATGCCGTCGTGGCGCTTGAGGATGCAAGTACGACGAAAAAGGGGATAGTACAGCTC > 1:18235250/1‑68 TCGCCTTCGTGGATGCCGTCGTGGCGCTTGAGGATGCAAGTACGACGAAAAAGGGGATAGTACAGCTC > 1:31501396/1‑68 CCTTCGTGGATGCCGTCGTGGCGCTTGAGGATGCAAGTACGACGAAAAAGGGGATAGTACAGCTCAGC > 1:13833654/1‑68 TCGTGGATGCCGTCGTGGCGCTTGAGGATGCAAGTACGACGAAAAAGGGGATAGTACAGCTCAGCAGT > 1:13865364/1‑68 TCGTGGATGCCGTCGTGGCGCTTGAGGATGCAAGTACGACGAAAAAGGGGATAGTACAGCTCAGCAGT > 1:6461913/1‑68 ATGCCGTCGTGGCGCTTGAGGATGCAAGTACGACGAAAAAGGGGATAGTACAGCTCAGCAGTGCGACC > 1:34232751/1‑68 CGTGGCGCTTGAGGATGCAAGTTCGACGAAAAAGGGGATAGTACAGCTCAGCAGTGCGACCAACAGT > 1:14769517/1‑67 CGTGGCGCTTGAGGATGCAAGTACGACGAAAAAGGGGATAGTACAGCTCAGCAGTGCGACCAACAGTA < 1:5711958/68‑1 CGTGGCGCTTGAGGATGCAAGTACGACGAAAAAGGGGATAGTACAGCTCAGCAGTGCGACCAACAGTA < 1:17212831/68‑1 CGTGGCGCTTGAGGATGCAAGTACGACGAAAAAGGGGATAGTACAGCTCAGCAGTGCGACCAACAGT > 1:24236129/1‑67 CGTGGCGCTTGAGGATGCAAGTACGACGAAAAAGGGGATAGTACAGCTCAGCAGTGCGACCAACAGT < 1:23035639/67‑1 CGTGGCGCTTGAGGATGCAAGTACGACGAAAAAGGGGATAGTACAGCTCAGCAGTGCGACCAACAGT > 1:29203305/1‑67 CGTGGCGCTTGAGGATGCAAGTACGACGAAAAAGGGGATAGTACAGCTCAGCAGTGCGACCAACAGT < 1:8956671/67‑1 CGTGGCGCTTGAGGATGCAAGTACGACGAAAAAGGGGATAGTACAGCTCAGCAGTGCGACCAACAGT < 1:34866596/67‑1 GGCTCTTGTGGATGCAAGTACGACGAAAAAGGGGATAGTACAGCTCAGAAGTGCGACCAACAGTACG < 1:18790531/67‑1 GGCGCTTGAGGTTGCAAGTACGTCGAAAAAGGGGATAGTACAGCTCAGCAGTGCGACCAACAGTACGT < 1:33365679/68‑1 GGCGCTTGAGGATGCAAGTACGACGAAAAAGGGGATAGTACAGCTCAGCAGTGCGACCAACAGTACGT < 1:13969366/68‑1 GGCGCTTGAGGATGCAAGTACGACGAAAAAGGGGATAGTACAGCTCAGCAGTGCGACCAACAGTACGT < 1:25194280/68‑1 GGCGCTTGAGGATGCAAGTACGACGAAAAAGGGGATAGTACAGCTCAGCAGTGCGACCAACAGTACGT < 1:21924980/68‑1 GGCGCTTGAGGATGCAAGTACGACGAAAAAGGGGATAGTACAGCTCAGCAGTGCGACCAACAGTACG > 1:32247969/1‑67 GGCGCTTGAGGATGCAAGTACGACGAAAAAGGGGATAGTACAGCTCAGCAGTGCGACCAACAGTACG < 1:1003623/67‑1 GGCGCTTGAGGATGCAAGTACGACGAAAAAGGGGATAGTACAGCTCAGCAGTGCGACCAACAGTACG < 1:8277949/67‑1 GGCGCTTGAGGATGCAAGTACGACGAAAAAGGGGATAGTACAGCTCAGCAGTGCGACCAACAGTACG > 1:25033402/1‑67 GGCGCTTGAGGATGCAAGTACGACGAAAAAGGGGATAGTACAGCTCAGCAGTGCGACCAACAGTACG < 1:5735536/67‑1 GGCGCTTGAGGATGCAAGTACGACGAAAAAGGGGATAGTACAGCTCAGCAGTGCGACCAACAGTACG < 1:5183455/67‑1 GGCGCTTGAGGATGCAAGTACGACGAAAAAGGGGATAGTACAGCTCAGCAGTGCGACCAACAGTACG > 1:29699919/1‑67 GGCGCTTGAGGATGCAAGTACGACGAAAAAGGGGATAGTACAGCTCAGCAGTGCGACCAACAGTACG < 1:21110648/67‑1 GGCGCTTGAGGATGCAAGTACGACGAAAAAGGGGATAGTACAGCTCAGCAGTGCGACCAACAGTACG < 1:17142701/67‑1 GGCGCTTGAGGATGCAAGTACGACGAAAAAGGGGATAGTACAGCTCAGCAGTGCGACCAACAGTACG < 1:31913840/67‑1 CGCTTGAGGATGCAAGTACGACGAAAAAGGGGATAGTACAGCTCAGCAGTGCGACCAACAGTACGTC < 1:31275359/67‑1 CGCTTGAGGATGCAAGTACGACGAAAAAGGGGATAGTACAGCTCAGCAGTGCGACCAACAGTACGTC < 1:1489625/67‑1 CGCTTGAGGATGCAAGTACGACGAAAAAGGGGATAGTACAGCTCAGCAGTGCGACCAACAGTACGTC < 1:6702870/67‑1 CGCTTGAGGATGCAAGTACGACGAAAAAGGGGATAGTACAGCTCAGCAGTGCGACCAACAGTACG > 1:21934580/1‑65 CGCTTGAGGATGCAAGTACGACGAAAAAGGGGATAGTACAGCTCAGCAGTGCGACCAACAGTACG > 1:31656359/1‑65 CGCTTGAGGATGCAAGTACGACGAAAAAGGGGATAGTACAGCTCAGCAGTGCGACCAACAGTACG > 1:880334/1‑65 GCTTGAGGATGCAAGTACGACGAAAAAGGGGATAGTACAGCTCAGCAGTGCGACCAACAGTACGTCTG > 1:8494292/1‑68 GCTTGAGGATGCAAGTACGACGAAAAAGGGGATAGTACAGCTCAGCAGTGCGACCAACAGTACGTCTG > 1:32833590/1‑68 GCTTGAGGATGCAAGTACGACGAAAAAGGGGATAGTACAGCTCAGCAGTGCGACCAACAGTACGTCT < 1:26300909/67‑1 TTGAGGATGCAAGTACGACGAAAAAGGGGATAGTACAGCTCAGCAGTGCGACCAACAGTACGTCTGAA < 1:24883328/68‑1 TTGAGGATGCAAGTACGACGAAAAAGGGGATAGTACAGCTCAGCAGTGCGACCAACAGTACGTCTGAA > 1:13674389/1‑68 TTGAGGATGCAAGTACGACGAAAAAGGGGATAGTACAGCTCAGCAGTGCGACCAACAGTACGTCTGA < 1:24177840/67‑1 CGTACTTTTGCTCTGAGCTGCCGCCGTCGCACTGCCAGCAGCCTCTGTCGCCTTCGTGGATGCCGTCGTGGCGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/1424607‑1424533‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgtggcgctTGAGGATGCAAGTACGACGAAAAAGGGGATAGTACAGCTCAGCAGTGCGACCAACAGTACGTCTGAA > CP009273/1424679‑1424745 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |