| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 1424533 = | 229 (0.510) | 18 (0.050) | 9/94 | NT | 5.9% | coding (1228/3363 nt) | stfR | Rac prophage; putative tail fiber protein |
| ? | CP009273 | 1424679 = | 380 (1.020) | coding (1374/3363 nt) | stfR | Rac prophage; putative tail fiber protein | |||||
Only 100 of 319 total aligned reads displayed.
GTCATCGGCATCATCGGCGTCTGCTTCAAAAGATGAGGCGACCAGACAAGCGTCAGCAGCGAAGAGCAGCGCCACGACGGCATCCACGAAGGCGACAGAGGCTGCTGGCAGTGCGACGGCGGCAGCTCAGAGCAA > CP009273/1424466‑1424600 | ttcagacgtactgttggtcgcactgctgagctgtactatcccctttttcgtcgtacttgcatcctcaa < 1:24883328‑M1/1‑1 (MQ=255) cagacgtactgttggtcgcactgctgagctgtactatcccctttttcgtcgtacttgcatcctcaAgc > 1:32833590‑M1/66‑68 (MQ=255) cATCGGCATCATCGGCGTCTGCTTCAAAAGATGAGGCGACCAGACAAGCGTCAGCAGCGAAGagcagc < 1:24988023/68‑1 (MQ=255) cATCGGCATCATCGGCGTCTGCTTCAAAAGATGAGGCGACCAGACAAGCGTCAGCAGCGAAGagcagc < 1:9216529/68‑1 (MQ=255) aTCGGCATCATCGGCGTCTGCTTCAAAAGATGAGGCGACCAGACAAGCGTCAGCAGCGAAGAGCAgcg < 1:26052562/68‑1 (MQ=255) cGGCATCATCGGCGTCTGGTTCAAAGGATGAGGCTACCAGACCAGCGTCAGCAGCGAAGAGCAgcgca > 1:36675518/1‑67 (MQ=255) cGGCATCATCGGCGTCTGCTTCAAAAGATGAGGCGACCAGACAAGCGTCAGCAGCGAAGagcagccgc > 1:13092575/1‑65 (MQ=255) acgtactgttggtcgcactgctgagctgtactatcccctttttcgtcgtacttgcatcctcaAGCGcc < 1:25194280‑M1/6‑1 (MQ=255) acgtactgttggtcgcactgctgagctgtactatcccctttttcgtcgtacttgcatcctcaAGCGcc < 1:21924980‑M1/6‑1 (MQ=255) cgtactgttggtcgcacttctgagctgtactatcccctttttcgtcgtacttgcatccacaAGAGcc < 1:18790531‑M1/6‑1 (MQ=255) cgtactgttggtcgcactgctgagctgtactatcccctttttcgtcgtacttgcatcctcaAGCGcc < 1:1003623‑M1/6‑1 (MQ=255) cgtactgttggtcgcactgctgagctgtactatcccctttttcgtcgtacttgcatcctcaAGCGcc > 1:29699919‑M1/62‑67 (MQ=255) cgtactgttggtcgcactgctgagctgtactatcccctttttcgtcgtacttgcatcctcaAGCGcc < 1:5183455‑M1/6‑1 (MQ=255) cgtactgttggtcgcactgctgagctgtactatcccctttttcgtcgtacttgcatcctcaAGCGcc < 1:31913840‑M1/6‑1 (MQ=255) gCATCATCGGCGTCTGCTTCAAAAGATGAGGCGACCAGACAAGCGTCAGCAGCGAAGAGCAGCGCCac > 1:32487300/1‑68 (MQ=255) gCATCATCGGCGTCTGCTTCAAAAGATGAGGCGACCAGACAAGCGTCAGCAGCGAAGAGCAGCGCCac > 1:21764105/1‑68 (MQ=255) tactgttggtcgcactgctgagctgtactatcccctttttcgtcgtacttgcatcctcaAGCGCCacg < 1:5711958‑M1/9‑1 (MQ=255) atcatcGGCGTCTGCTTCAAAAGATGAGGCGACCAGACAAGCGTCAGCAGCGAAGAGCAGCGCCacg < 1:15200879/67‑1 (MQ=255) atcatcGGCGTCTGCTTCAAAAGATGAGGCGACCAGACAAGCGTCAGCAGCGAAGAGCAGCGCCacg > 1:28940074/1‑67 (MQ=255) actgttggtcgcactgctgagctgtactatcccctttttcgtcgtacttgcatcctcaAGCGCCacg < 1:34866596‑M1/9‑1 (MQ=255) actgttggtcgcactgctgagctgtactatcccctttttcgtcgtacttgcatcctcaAGCGCCacg < 1:8956671‑M1/9‑1 (MQ=255) actgttggtcgcactgctgagctgtactatcccctttttcgtcgtacttgcatcctcaAGCGCCacg > 1:29203305‑M1/59‑67 (MQ=255) cGGCGTCTGCTTCAAAAGATGAGGCGACCAGACAAGCGTCAGCATCGAAGAGCAGCGCCACTAAGGct > 1:1824215/1‑67 (MQ=255) cGGCGTCTGCTTCAAAAGATGAGGCGACCAGACAAGCGTCAGCAGCGAAGAGCAGCGCCACGACGGCa > 1:26733256/1‑68 (MQ=255) cGGCGTCTGCTTCAAAAGATGAGGCGACCAGACAAGCGTCAGCAGCGAAGAGCAGCGCCACGACGGCa > 1:27279099/1‑68 (MQ=255) ggCGTCTGCTTCAAAAGATGAGGCGACCAGACAAGCGTCAGCAGCGAAGAGCAGCGCCACGACGGCAt < 1:30589482/68‑1 (MQ=255) gCGTCTGCTTCAAAAGATGAGGCGACCAGACAAGCGTCAGCAGCGAAGAGCAGCGCCACGACGGCAt > 1:4949678/1‑67 (MQ=255) cGTCTGCTTCAAAAGATGAGGCTACCAGACAAGCGTCAGCAGCGAAGAGCAGCGCCACGACGGCATcc > 1:6316141/1‑68 (MQ=255) cGTCTGCTTCAAAAGATGAGGCGTCCAGACAAGCGTCAGCAGCGAAGAGCAGCGCCACGACGGCATcc > 1:3945007/1‑68 (MQ=255) cGTCTGCTTCAAAAGATGAGGCGACCAGACAAGCGTCAGCAGCGAAGAGCAGCGCCACGACGGCATcc > 1:4499278/1‑68 (MQ=255) cGTCTGCTTCAAAAGATGAGGCGACCAGACAAGCGTCAGCAGCGAAGAGCAGCGCCACGACGGCATcc > 1:5886220/1‑68 (MQ=255) cGTCTGCTTCAAAAGATGAGGCGACCAGACAAGCGTCAGCAGCGAAGAGCAGCCCCACGACGGCATcc > 1:32059423/1‑68 (MQ=255) cGTCTGCTTCAAAAGATGAGGCGACCAGACAAGCGTAAGCAGCGAAGAGCAGCGCCACGACGGCATcc > 1:8340919/1‑68 (MQ=255) tCTGCTTCAAAAGATGAGGCGACCAGACAAGCGTCAGCAGCGAAGAGCAGCGCCACGACGGCATCCAc > 1:1925239/1‑68 (MQ=255) tCTGCTTCAAAAGATGAGGCGACCAGACAAGCGTCAGCAGCGAAGAGCAGCGCCACGACGGCATCCAc > 1:2881066/1‑68 (MQ=255) tCTGCTTCAAAAGATGAGGCGACCAGACAAGCGTCAGCAGCGAAGAGCAGCGCCACGACGGCATCCAc > 1:3341973/1‑68 (MQ=255) tCTGCTTCAAAAGATGAGGCGACCAGACAAGCGTCAGCAGCGAAGAGCAGCGCCACGACGGCATCCAc > 1:7812376/1‑68 (MQ=255) tCTGCTTCAAAAGATGAGGCGACCAGACAAGCGTCAGCAGCGAAGAGCAGCGCCACGACGGCATCCAc > 1:23327976/1‑68 (MQ=255) tCTGCTTCAAAAGATGAGGCGACCAGACAAGCGTCAGCAGCGAAGAGCAGCGCCACGACGGCATCCAc > 1:34092169/1‑68 (MQ=255) tCTGCTTCAAAAGATGAGGCGACCAGACAAGCGTCAGCAGCGAAGAGCAGCGCCACGACGGCATCCAc > 1:11173818/1‑68 (MQ=255) actgctgagctgtactatcccctttttcgtcgtacttgcatcctcaAGCGCCACGACGGCATCCACGa > 1:13865364‑M1/47‑68 (MQ=255) gCTTCAAAAGATGAGGCGACCAGACAAGCGTCAGCAGCGAAGAGCAGCGCCACGACGGCATCCACGaa > 1:21996085/1‑68 (MQ=255) cTTCAAAAGATGAGGCGCCCAGACAAGCGTCAGCAGCGAAGAGCAGCGCCACGACGGCATCCACGAAg > 1:10553681/1‑68 (MQ=255) cTTCAAAAGATGAGGCGACCAGACAAGCGTCAGCAGCGAAGAGCAGCGCCACGACGGCATCCACGAAg > 1:17547043/1‑68 (MQ=255) ttCAAAAGATGAGGCGACCAGACAAGCGTCAGCAGCGAAGAGCAGCGCCACGACGGCATCCACGAAg < 1:17737752/67‑1 (MQ=255) tCAAAAGATGAGGCGACCAGACAAGCGTCAGCAGCGAAGAGCAGCGCCACGACGGCATCCACGAAGGc < 1:23876676/68‑1 (MQ=255) cAAAAGATGAGGCGACCAGACAAGCGTCAGCAGCGAAGAGCAGCGCCACGACGGCATCCACGAAGGCg < 1:36371167/68‑1 (MQ=255) aaGATGAGGCGACCAGACAAGCGTCAGCAGCGAAGAGCAGCGCCACGACGGCATCCACGAAGGCGACa > 1:31482736/1‑68 (MQ=255) aaGATGAGGCGACCAGACAAGCGTCAGCAGCGAAGAGCAGCGCCACGACGGCATCCACGAAGGCGACa > 1:1465813/1‑68 (MQ=255) aaGATGAGGCGACCAGACAAGCGTCAGCAGCGAAGAGCAGCGCCACGACGGCATCCACGAAGGCGACa > 1:1358078/1‑68 (MQ=255) aaGATGAGGCGACCAGACAAGCGTCAGCAGCGAAGAGCAGCGCCACGACGGCATCCACGAAGGCGACa > 1:36463407/1‑68 (MQ=255) aaGATGAGGCGACCAGACAAGCGTCAGCAGCGAAGAGCAGCGCCACGACGGCATCCACGAAGGCGACa > 1:24477155/1‑68 (MQ=255) aaGATGAGGCGACCAGACAAGCGTCAGCAGCGAAGAGCAGCGCCACGACGGCATCCACGAAGGCGACa > 1:34198963/1‑68 (MQ=255) aaGATGAGGCGACCAGACAAGCGTCAGCAGCGAAGAGCAGCGCCACGACGGCATCCACGAAGGCGACa > 1:35933582/1‑68 (MQ=255) aaGATGAGGCGACCAGACAAGCGTCAGCAGCGAAGAGCAGCGCCACGACGGCATCCACGAAGGCGACa > 1:25368987/1‑68 (MQ=255) aaGATGAGGCGACCAGACAAGCGTCAGCAGCGAAGAGCAGCGCCACGACGGCATCCACGAAGGCGACa > 1:23366675/1‑68 (MQ=255) aaGATGAGGCGACCAGACAAGCGTCAGCAGCGAAGAGCAGCGCCACGACGGCATCCACGAAGGCGACa > 1:24056426/1‑68 (MQ=255) aaGATGAGGCGACCAGACAAGCGTCAGCAGCGAAGAGCAGCGCCACAACGGCATCCACGAAGGCGACa > 1:14109369/1‑68 (MQ=255) aGATGAGGCGACCAGACAAGCGTCAGCAGCGAAGAGCAGCGCCACGACGGCATCCACGAAGGCGACag > 1:16076053/1‑68 (MQ=255) aGATGAGGCGACCAGACAAGCGTCAGCAGCGAAGAGCAGCGCCACGACGGCATCCACGAAGGCGACag > 1:15764184/1‑68 (MQ=255) aTGAGGCGACCAGACAAGCGTCAGCAGCGAAGAGCAGCGCCACGACGGCATCCACGAAGGCGACagag > 1:12115759/1‑68 (MQ=255) tGAGGCGACCAGACAAGCGTCAGCAGCGAAGAGCAGCGCCACGACGGCATCCACGAAGGCGACagag > 1:22284047/1‑67 (MQ=255) gAGGCGACCAGACAAGCGTCAGCAGCGAAGAGCAGCGCCACGACGGCATCCACGAAGGCGACAGAGgc < 1:1737168/68‑1 (MQ=255) gAGGCGACCAGACAAGCGTCAGCAGCGAAGAGCAGCGCCACGACGGCATCCACGAAGGCGACAGAGgc < 1:22750421/68‑1 (MQ=255) gAGGCGACCAGACAAGCGTCAGCAGCGAAGAGCAGCGCCACGACGGCATCCACGAAGGCGACAGAGgc < 1:33599814/68‑1 (MQ=255) gAGGCGACCAGACAAGCGTCAGCAGCGAAGAGCAGCGCCACGACGGCATCCACGAAGGCGACAGAGgc < 1:11439206/68‑1 (MQ=255) gAGGCGACCAGACAAGCGTCAGCAGCGAAGAGCAGCGCCACGACGGCATCCACGAAGGCGACAGAGgc < 1:33153619/68‑1 (MQ=255) gAGGCGACCAGACAAGCGTCAGCAGCGAAGAGCAGCGCCACGACGGCATCCACGAAGGCGACAGAGgc < 1:3000932/68‑1 (MQ=255) gAGGCGACCAGACAAGCGTCAGCAGCGAAGAGCAGCGCCACGACGGCATCCACGAAGGCGACAGAGgc < 1:1341249/68‑1 (MQ=255) gAGGCGACCAGACAAGCGTCAGCAGCGAAGAGCAGCGCCACGACGGCATCCACGAAGGCGACAGAGgc < 1:37065335/68‑1 (MQ=255) ggCGACCAGACAAGCGTCAGCAGCGAAGAGCAGCGCCACGACGGCATCCACGAAGGCGACAGAGgct > 1:15495121/1‑67 (MQ=255) gCGACCAGACAAGCGTCAGCAGCGAAGAGCAGCGCCACGCCGGCATCCACGAAGGCGCCAGAGgct > 1:1098219/1‑66 (MQ=255) gCGACCAGACAAGCGTCAGCAGCGAAGAGCAGCGCCACGACGGCATCCACGAAGGCGACAGAGgctgc > 1:7381836/1‑68 (MQ=255) cGACCAGACAAGCGTCAGCAGCGAAGAGCAGCGCCACGACGGCATCCACGAAGGCGACAGAGgct > 1:31600320/1‑65 (MQ=255) cGACCAGACAAGCGTCAGCAGCGAAGAGCAGCGCCACGACGGCATCCACGAAGGCGACAGAGgct > 1:19421104/1‑65 (MQ=255) ccAGACAAGCGTCAGCAGCGAAGAGCAGCGCCACGACGGCATCCACGAAGGCGACAGAGGCTGCTGGc > 1:14834377/1‑68 (MQ=255) cAAGCGTCAGCAGCGAAGAGCAGCGCCACGACGGCATCCACGAAGGCGACAGAGGCTGCTGGCAGTGc > 1:7080624/1‑68 (MQ=255) aGCGTCAGCAGCGAAGAGCAGCGCCACGACGGCATCCACGAAGGCGACAGAGGCTGCTGGCAGTGCg > 1:33316997/1‑67 (MQ=255) aGCGTCAGCAGCGAAGAGCAGCGCCACGACGGCATCCACGAAGGCGACAGAGGCTGCTGGCAGTGCg > 1:3570242/1‑67 (MQ=255) cGTCAGCAGCGAAGAGCAGCGCCACGCCGGCATCCACGAAGGCGACAGAGGCTGCTGGCAGTGCGAcg > 1:27892542/1‑68 (MQ=255) cGTCAGCAGCGAAGAGCAGCGCCACGACGGCATCCACGAAGGCGACAGAGGCTGCTGGCAGTGCGAcg > 1:21494313/1‑68 (MQ=255) cGTCAGAAGCGAAGAGCAGAGAAACGACGGCATCCACGAAGGCGACAGAGGCTGCTGGCAGTTCGAcg > 1:20088795/1‑68 (MQ=255) gTCAGCAGCGAAGAGCAGCGCCACGACGGCATCCACGAAGGCGACAGAGGCTGCTGGCAGTGCGAcg > 1:30389644/1‑67 (MQ=255) gTCAGCAGCGAAGAGCAGCGCCACGACGGCATCCACGAAGGCGACAGAGGCTGCTGGCAGTGCGAcg > 1:19586491/1‑67 (MQ=255) gTCAGCAGCGAAGAGCAGCGCCACGACGGCATCCACGAAGGCGACAGAGGCTGCTGGCAGTGCGAcg > 1:28058552/1‑67 (MQ=255) gTCAGCAGCGAAGAGCAGCGCCACGACGGCATCCACGAAGGCGACAGAGGCTGCTGGCAGTGCGAcg > 1:28570774/1‑67 (MQ=255) gTCAGCAGCGAAGAGCAGCGCCACGACGGCATCCACGAAGGCGACAGAGGCTGCTGGCAGTGCGAcg > 1:21157417/1‑67 (MQ=255) cagcagCGAAGAGCAGCGCCACGACGGCATCCACGAAGGCGACAGAGGCTGCTGGCAGTGCGAcggcg < 1:16816457/68‑1 (MQ=255) gcagcGAAGAGCAGCGCCACGACGGCATCCACGAAGGCGACAGAGGCTGCTGGCAGTGCGACggcggc > 1:9472320/1‑68 (MQ=255) gcagcGAAGAGCAGCGCCACGACGGCATCCACGAAGGCGACAGAGGCTGCTGGCAGTGCGACggcggc > 1:13730961/1‑68 (MQ=255) gcagcGAAGAGCAGCGCCACGACGGCATCCACGAAGGCGACAGAGGCTGCTGGCAGTGCGACggcggc > 1:30233142/1‑68 (MQ=255) agcGAAGAGCAGCGCCACGACGGCATCCACGAAGGCGACAGAGGCTGCTGGCAGTGCGACGGCGGCa > 1:34548964/1‑67 (MQ=255) catcctcaAGCGCCACGCCGGCATGCACGAAGGCGACAGAGGCTGCTGGCAGTGCGACGGCGGCAGc < 1:20436393‑M1/59‑1 (MQ=255) gAAGAGCAGCGCCACGACGGCATCCACGAAGGCGACAGAGGCTGCTGGCAGTGCGACGGCGGCAGCTc > 1:11671365/1‑68 (MQ=255) atcctcaAGCGCCACGACGGCATCCACGAAGGCGACAGAGGCTGCTGGCAGTGCGACGGCGGCAGCTc < 1:11545689‑M1/61‑1 (MQ=255) cctcaAGCGCCACGCCGGCATCCACGAAGGCGACAGAGGCTGCTGGCAGTGCGCCGGCGGCAGCTCa < 1:857417‑M1/62‑1 (MQ=255) gcagcGCCACGACGGCATCCACGAAGGCGACAGAGGCTGCTGGCAGTGCGACGGCGGCAGCTCaga < 1:29431343/66‑1 (MQ=255) gcagcGCCACGACGGCATCCACGAAGGCGACAGAGGCTGCTGGCAGTGCGACGGCGGCAGCTCAGAGc > 1:27619743/1‑68 (MQ=255) AGCGCCACGACGGCATCCACGAAGGCGACAGAGGCTGCTGGCAGTGCGACGGCGGCAGCTCAGAGCaa < 1:6680117‑M1/68‑1 (MQ=255) AGCGCCACGACGGCATCCACGAAGGCGACAGAGGCTGCTGGCAGTGCGACGGCGGCAGCTCAGAGCaa < 1:17104495‑M1/68‑1 (MQ=255) | GTCATCGGCATCATCGGCGTCTGCTTCAAAAGATGAGGCGACCAGACAAGCGTCAGCAGCGAAGAGCAGCGCCACGACGGCATCCACGAAGGCGACAGAGGCTGCTGGCAGTGCGACGGCGGCAGCTCAGAGCAA > CP009273/1424466‑1424600 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |