New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 1424533 =229 (0.510)18 (0.050) 9/94 NT 5.9% coding (1228/3363 nt) stfR Rac prophage; putative tail fiber protein
?CP009273 1424679 = 380 (1.020)coding (1374/3363 nt) stfR Rac prophage; putative tail fiber protein

Only 100 of 488 total aligned reads displayed.

AATCCGCGGCAACGCGCGCCGAGACAGCAGCTAAACGGGCAGAGGATATTGCATCCGCCGTGGCGCTTGAGGATGCAAGTACGACGAAAAAGGGGATAGTACAGCTCAGCAGTGCGACCAACAGTACGTCTGAA  >  CP009273/1424612‑1424745
                                                                   |                                                                  
  tCCGCGGCAACGCGCGCCGAGACAGCAGCTAAACGGGCAGAGGATATTGCATCCGCCGTGGCGCTTGa                                                                  >  1:24522090/1‑68 (MQ=255)
   ccGCGGCAACGCGCGCCGAGACAGCAGCTAAACGGGCAGAGGATATTGCATCCGCCGTGGCGCTTGAg                                                                 >  1:35047320/1‑68 (MQ=255)
   ccGCGGCAACGCGCGCCGAGACAGCAGCTAAACGGGCAGAGGATATTGCATCCGCCGTGGCGCTTGAg                                                                 >  1:28973415/1‑68 (MQ=255)
   ccGCGGCAACGCGCGCCGAGACAGCAGCTAAACGGGCAGAGGATATTGCATCCGCCGTGGCGCTTGAg                                                                 >  1:22050985/1‑68 (MQ=255)
       ggCAACGCGCGCCGAGACAGCAGCTAAACGGGCAGAGGATATTGCATCCGCCGTGGCGCTTGAGGATg                                                             <  1:5032212/68‑1 (MQ=255)
        gCAACGCGCGCCGAGACAGCAGCTAAACGGGCAGAGGATATTGCATCCGCCGTGGCGCTTGAGGATGc                                                            >  1:28231772/1‑68 (MQ=255)
        gCAACGCGCGCCGAGACAGCAGCTAAACGGGCAGAGGATATTGCATCCGCCGTGGCGCTTGAGGATGc                                                            >  1:23547275/1‑68 (MQ=255)
               gcgcCGAGACAGCAGCTAAACGGGCAGAGGATATTGCATCCGCCGTGGCGCTTGAGGATGCAAGTacg                                                     >  1:31486451/1‑68 (MQ=255)
                       aCAGCAGCTAAACGGGCAGAGGATATTGCATCCGCCGTGGCGCTTGAGGATGCAAGTACGACGaaaaa                                             >  1:10428530/1‑68 (MQ=255)
                       aCAGCAGCTAAACGGGCAGAGGATATTGCATCCGCCGTGGCGCTTGAGGATGCAAGTACGACGaaaaa                                             >  1:18631066/1‑68 (MQ=255)
                            agcagcctctgtcgccttcgtggatgccgtcgtggcgctTGAGGATGCAAGTACGACGAAAAAGGGGa                                        >  1:14711686‑M2/40‑68 (MQ=255)
                            agcTAAACGGGCAGAGGATATTGCTTCCGCCGTGGCGCTTGAGGATGCAAGTACGACGAAAAAgggg                                         <  1:11593176/67‑1 (MQ=255)
                            agcTAAACGGGCAGAGGATATTGCATCCGCCGTGGCGCTTGAGGATGCAAGTACGACGaaaa                                              <  1:2672456/62‑1 (MQ=255)
                            agcTAAACGGGCAGAGGATATTGCATCCGCCGTGGCGCTTGAGGATGCAAGTACGACGaaaa                                              <  1:36590316/62‑1 (MQ=255)
                            agcTAAACGGGCAGAGGATATTGCATCCGCCGTGGCGCTTGAGGATGCAAGTACGACGaaaa                                              <  1:15170773/62‑1 (MQ=255)
                            agcTAAACGGGCAGAGGATATTGCATCCGCCGTGGCGCTTGAGGATGCAAGTACGACGAAAAAgggg                                         <  1:29271308/67‑1 (MQ=255)
                            agcTAAACGGGCAGAGGATATTGCATCCGCCGTGGCGCTTGAGGATGCAAGTACGACGAAAAAgggg                                         <  1:9105337/67‑1 (MQ=255)
                            agcTAAACGGGCAGAGGATATTGCATCCGCCGTGGCGCTTGAGGATGCAAGTACGACGAAAAAgggg                                         <  1:12931264/67‑1 (MQ=255)
                            agcTAAACGGGCAGAGGATATTGCATCCGCCGTGGCGCTTGAGGATGCAAGTACGACGAAAAAgggg                                         <  1:11317156/67‑1 (MQ=255)
                            agcTAAACGGGCAGAGGATATTGCATCCGCCGTGGCGCTTGAGGATGCAAGTACGACGAAAAAgggg                                         <  1:20596981/67‑1 (MQ=255)
                            agcTAAACGGGCAGAGGATATTGCATCCGCCGTGGCGCTTGAGGATGCAAGTACGACGAAAAAgggg                                         <  1:5614318/67‑1 (MQ=255)
                            agcTAAACGGGCAGAGGATATTGCATCCGCCGTGGCGCTTGAGGATGCAAGTACGACGAAAAAgggg                                         <  1:5106989/67‑1 (MQ=255)
                            agcTAAACGGGCAGAGGATATTGCATCCGCCGTGGCGCTTGAGGATGCAAGTACGACGAAAAAgggg                                         <  1:18210267/67‑1 (MQ=255)
                            agcTAAACGGGCAGAGGATATTGCATCCGCCGTGGCGCTTGAGGATGCAAGTACGACGAAAAAgggg                                         <  1:3611564/67‑1 (MQ=255)
                            agcTAAACGGGCAGAGGATATTGCATCCGCCGTGGCGCTTGAGGATGCAAGTACGACGAAAAAGGGGa                                        >  1:37009426/1‑68 (MQ=255)
                               tAAACGGGCAGAGGATATTGCATCCGCCGTGGCGCTTGAGGATGCAAGTACGACGAAAAAGGGGATa                                      <  1:35291142/67‑1 (MQ=255)
                               tAAACGGGCAGAGGATATTGCATCCGCCGTGGCGCTTGAGGATGCAAGTACGACGAAAAAGGGGATa                                      <  1:36797168/67‑1 (MQ=255)
                               tAAACGGGCAGAGGATATTGCATCCGCCGTGGCGCTTGAGGATGCAAGTACGACGAAAAAGGGGATAg                                     >  1:11868336/1‑68 (MQ=255)
                               tAAACGGGCAGAGGATATTGCATCCGCCGTGGCGCTTGAGGATGCAAGTACGACG‑AAAAGGGGATAGt                                    <  1:9247594/68‑1 (MQ=255)
                                aaaCGGGCAGATGATATTGCAACCGCCGTGGCGCTTGAGGATGCAAGTACGACGAAAAAGGGGATAGt                                    <  1:23206133/68‑1 (MQ=255)
                                aaaCGGGCAGAGGATATTGCATGCGCCGGGGCGCTTGAGGATGCAAGTACGACGAATAAGGGGATAGt                                    <  1:33869998/68‑1 (MQ=255)
                                aaaCGGGCAGAGGATATTGCATCCGCCGTGGCGCTTGAGGATGCAAGTACGACGAAAAAGGGGATAGt                                    <  1:20411557/68‑1 (MQ=255)
                                aaaCGGGCAGAGGATATTGCATCCGCCGTGGCGCTTGAGGATGCAAGTACGACGAAAAAGGGGATAGt                                    <  1:16638303/68‑1 (MQ=255)
                                aaaCGGGCAGAGGATATTGCATCCGCCGTGGCGCTTGAGGATGCAAGTACGACGAAAAAGGGGATAGt                                    <  1:1627362/68‑1 (MQ=255)
                                aaaCGGGCAGAGGATATTGCATCCGCCGTGGCGCTTGAGGATGCAAGTACGACGAAAAAGGGGATAGt                                    <  1:29540790/68‑1 (MQ=255)
                                 aaCGGGCAGAGGATATTGCATCCGCCGTGGCGCTTGAGGATGCAAGTACGACGAAAAAGGGGATAGt                                    >  1:8379695/1‑67 (MQ=255)
                                  aCGGGCAGAGGATATTGCATCCGCCGTGGCGCTTGAGGATGCAAGTACGACGAAAAAGGGGATAGTAc                                  >  1:12376793/1‑68 (MQ=255)
                                   cGGGCAGAGGATATTGCTTCCGCCGTGGCGCTTGAGGATGCAAGTACGACGAAAAAGGGGATAGTACa                                 <  1:3937007/68‑1 (MQ=255)
                                   cGGGCAGAGGATATTGCATCCGCCGTGGCGCTTGAGGATGCAAGTACGACGAAAAAGGGGATAGTACa                                 <  1:27311460/68‑1 (MQ=255)
                                   cGGGCAGAGGATATTGCATCCGCCGTGGCGCTTGAGGATGCAAGTACGACGAAAAAGGGGATAGTACa                                 <  1:26961040/68‑1 (MQ=255)
                                   cGGGCAGAGGATATTGCATCCGCCGTGGCGCTTGAGGATGCAAGTACGACGAAAAAGGGGATAGTACa                                 <  1:19998799/68‑1 (MQ=255)
                                   cGGGCAGAGGATATTGCATCCGCCGTGGCGCTTGAGGATGCAAGTACGACGAAAAAGGGGATAGTACa                                 <  1:22365464/68‑1 (MQ=255)
                                   cGGGCAGAGGATATTGCATCCGCCGTGGCGCTTGAGGATGCAAGTACGACGAAAAAGGGGATAGTACa                                 <  1:762872/68‑1 (MQ=255)
                                    gggCAGAGGATATTGCATCCGCCGTGGCGCTTGAGGATGCAAGTACGACGAAAAAGGGGATAGTACa                                 >  1:32650609/1‑67 (MQ=255)
                                    gggCAGAGGATATTGCATCCGCCGTGGCGCTTGAGGATGCAAGTACGACGAAAAAGGGGATAGTACa                                 >  1:15359909/1‑67 (MQ=255)
                                    gggCAGAGGATATTGCATCCGCCGTGGCGCTTGAGGATGCAAGTACGACGAAAAAGGGGATAGTACa                                 >  1:26147082/1‑67 (MQ=255)
                                      gCAGAGGATATTGCATCCGCCGTGGCGCTTGAGGATGCAAGTACGACGAAAAAGGGGATAGTACAGc                               <  1:6444391/67‑1 (MQ=255)
                                      gCAGAGGATATTGCATCCGCCGTGGCGCTTGAGGATGCAAGTACGACGAAAAAGGGGATAGTACAGc                               <  1:6681501/67‑1 (MQ=255)
                                      gCAGAGGATATTGCATCCGCCGTGGCGCTTGAGGATGCAAGTACGACGAAAAAGGGGATAGTACAGc                               <  1:22698253/67‑1 (MQ=255)
                                      gCAGAGGATATTGCATCCGCCGTGGCGCTTGAGGATGCAAGTACGACGAAAAAGGGGATAGTACAGc                               <  1:13499666/67‑1 (MQ=255)
                                      gCAGAGGATATTGCATCCGCCGTGGCGCTTGAGGATGCAAGTACGACGAAAAAGGGGATAGTACAGc                               <  1:28778389/67‑1 (MQ=255)
                                           ggATATTGCATCCGCCGTGGCGCTGGAGGATGCAAGTACGACGAAAAAGGGGATAGTACAGCTcagca                         >  1:35739266/1‑68 (MQ=255)
                                            gATATTGCATCCGCCGTGGCGCTTGAGGATGCAAGTACGACGAAAAAGGGGATAGTACAGCTcagcag                        >  1:29860249/1‑68 (MQ=255)
                                            gATATTGCATCCGCCGTGGCGCTTGAGGATGCAAGTACGACGAAAAAGGGGATAGTACAGCTcagcag                        >  1:34887283/1‑68 (MQ=255)
                                            gATATTGCATCCGCCGTGGCGCTTGAGGATGCAAGTACGACGAAAAAGGGGATAGTACAGCTcagcag                        >  1:19891816/1‑68 (MQ=255)
                                            gATATTGCATCCGCCGTGGCGCTTGAGGATGCAAGTACGACGAAAAAGGGGATAGTACAGCTcagcag                        >  1:8075046/1‑68 (MQ=255)
                                              tatTGCATCCGCCGTGGCGCTTGAGGATGCAAGTACGACGAAAAAGGGGATAGTACAGCTCAGCAGt                       <  1:21786808/67‑1 (MQ=255)
                                              tatTGCATCCGCCGTGGCGCTTGAGGATGCAAGTACGACGAAAAAGGGGATAGTACAGCTCAGCAGt                       <  1:15646807/67‑1 (MQ=255)
                                               atTGCATCCGCCGTGGCGCTTGAGGATGCAAGTACGACGAAAAAGGGGATAGTACAGCTCAGCAGTGc                     <  1:18832096/68‑1 (MQ=255)
                                                ttGCATCCGCCGTGGCGCTTGAGGATGCAAGTACGACGAAAAAGGGGATAGTACAGCTCAGCAGTGCg                    >  1:24780908/1‑68 (MQ=255)
                                                ttGCATCCGCCGTGGCGCTTGAGGATGCAAGTACGACGAAAAAGGGGATAGTACAGCTCAGCAGTGCg                    >  1:60750/1‑68 (MQ=255)
                                                 tGCATCCGCCGTGGCGCTTGAGGATGCAAGTACGACGAAAAAGGGGATAGTACAGCTCAGCAGTGCg                    >  1:7403542/1‑67 (MQ=255)
                                                 tGCATCCGCCGTGGCGCTTGAGGATGCAAGTACGACGAAAAAGGGGATAGTACAGCTCAGCAGTGCGa                   <  1:25088417/68‑1 (MQ=255)
                                                 tGCATCCGCCGTGGCGCTTGAGGATGCAAGTACGACGAAAAAGGGGATAGTACAGCTCAGCAGTGCGa                   <  1:15761386/68‑1 (MQ=255)
                                                 tGCATCCGCCGTGGCGCTTGAGGATGCAAGTACGACGAAAAAGGGGATAGTACAGCTCAGCAGTGCGa                   <  1:7263108/68‑1 (MQ=255)
                                                  gCATCCGCCGTGGCGCTTGAGTATGCAAGTACGACGAAAAAGGGGATATTACAGCTCAGCAGTGCGa                   >  1:13005840/1‑67 (MQ=255)
                                                  gCATCCGCCGTGGCGCTTGAGGATGCAAGTACGACGAAAAAGGGGATAGTACAGCTCAGCAGTGCGa                   >  1:6842033/1‑67 (MQ=255)
                                                  gCATCCGCCGTGGCGCTTGAGGATGCAAGTACGACGAAAAAGGGGATAGTACAGCTCAGCAGTGCGa                   >  1:3102739/1‑67 (MQ=255)
                                                  gCATCCGCCGTGGCGCTTGAGGATGCAAGTACGACGAAAAAGGGGATAGTACAGCTCAGCAGTGCGa                   >  1:17575568/1‑67 (MQ=255)
                                                  gCATCCGCCGTGGCGCTTGAGGATGCAAGTACGACGAAAAAGGGGATAGTACAGCTCAGCAGTGCGa                   >  1:30428966/1‑67 (MQ=255)
                                                  gCATCCGCCGTGGCGCTTGAGGATGCAAGTACGACGAAAAAGGGGATAGTACAGCTCAGCAGTGCGa                   >  1:25684293/1‑67 (MQ=255)
                                                  gCATCCGCCGTGGCGCTTGAGGATGCAAGTACGACGAAAAAGGGGATAGTACAGCTCAGCAGTGCGa                   >  1:21086510/1‑67 (MQ=255)
                                                  gCATCCGCCGTGGCGCTTGAGGATGCAAGTACGACGAAAAAGGGGATAGTACAGCTCAGCAGTGCGa                   >  1:23400611/1‑67 (MQ=255)
                                                   cATCCGCCGTGGCGCTTGAGGATGCAAGTACGACGATAAAGGGGATAGTACAGCTCAGCAGTGCGAcc                 >  1:169122/1‑68 (MQ=255)
                                                   atgccgtcgtggcgctTGAGGATGCAAGTACGACGAAAAAGGGGATAGTACAGCTCAGCAGTGCGAcc                 >  1:34232751‑M2/17‑68 (MQ=255)
                                                    aTCCGCCGTGGCGCTTGAGGATGCAAGTACGACGAAAAAGGGGATAGTACAGCTCAGCAGTGCGACCa                >  1:21396114/1‑68 (MQ=255)
                                                    aTCCGCCGTGGCGCTTGAGGATGCAAGTACGACGAAAAAGGGGATAGTACAGCTCAGCAGTGCGACCa                >  1:10843038/1‑68 (MQ=255)
                                                    aTCCGCCGTGGCGCTTGAGGATGCAAGTACGACGAAAAAGGGGATAGTACAGCTCAGCAGTGCGACCa                >  1:22976058/1‑68 (MQ=255)
                                                    aTCCGCCGTGGCGCTTGAGGATGCAAGTACGACGAAAAAGGGGATAGTACAGCTCAGCAGTGCGACCa                <  1:30061578/68‑1 (MQ=255)
                                                    aTCCGCCGTGGCGCTTGAGGATGCAAGTACGACGAAAAAGGGGATAGTACAGCTCAGCAGTGCGACCa                >  1:18346726/1‑68 (MQ=255)
                                                    aTCCGCCGTGGCGCTTGAGGATGCAAGTACGACGAAAAAGGGGATAGTACAGCTCAGCAGTGCGACCa                >  1:4743990/1‑68 (MQ=255)
                                                    aTCCGCCGTGGCGCTTGAGGATGCAAGTACGACGAAAAAGGGGATAGTACAGCTCAGCAGTGCGACCa                <  1:1388349/68‑1 (MQ=255)
                                                     tCCGCCGTGGCGCTTGAGGATGCAAGTACGACGAAAAAGGGGATAGTACAGCTCAGCAGTGCGACCaa               <  1:28517702/68‑1 (MQ=255)
                                                      ccgccgTGGCGCTTGAGGATGCAAGTACGACGAAAAAGGGGATAGTACAGCTCAGCAGTGCGACCAAc              <  1:19436290/68‑1 (MQ=255)
                                                      ccgccgTGGCGCTTGAGGATGCAAGTACGACGAAAAAGGGGATAGTACAGCTCAGCAGTGCGACCAAc              >  1:1062781/1‑68 (MQ=255)
                                                      ccgccgTGGCGCTTGAGGATGCAAGTACGACGAAAAAGGGGATAGTACAGCTCAGCAGTGCGACCAAc              >  1:1798659/1‑68 (MQ=255)
                                                        gccgTGGCGCTTGAGGATGCAAGTACGACGAAAAAGGGGATAGTACAGCTCAGCAGTGCGACCAACAg            >  1:9546036/1‑68 (MQ=255)
                                                        gccgTGGCGCTTGAGGATGCAAGTACGACGAAAAAGGGGATAGTACAGCTCAGCAGTGCGACCAACAg            >  1:14391632/1‑68 (MQ=255)
                                                             ggcgctTGAGGTTGCAAGTACGTCGAAAAAGGGGATAGTACAGCTCAGCAGTGCGACCAACAGTACGt       <  1:33365679‑M2/62‑1 (MQ=255)
                                                             ggcgctTGAGGATGCAAGTACGACGAAAAAGGGGATAGTACAGCTCAGCAGTGCGACCAACAGTACg        <  1:31913840‑M2/61‑1 (MQ=255)
                                                             ggcgctTGAGGATGCAAGTACGACGAAAAAGGGGATAGTACAGCTCAGCAGTGCGACCAACAGTACg        >  1:32247969‑M2/7‑67 (MQ=255)
                                                             ggcgctTGAGGATGCAAGTACGACGAAAAAGGGGATAGTACAGCTCAGCAGTGCGACCAACAGTACg        >  1:29699919‑M2/7‑67 (MQ=255)
                                                             ggcgctTGAGGATGCAAGTACGACGAAAAAGGGGATAGTACAGCTCAGCAGTGCGACCAACAGTACg        <  1:1003623‑M2/61‑1 (MQ=255)
                                                             ggcgctTGAGGATGCAAGTACGACGAAAAAGGGGATAGTACAGCTCAGCAGTGCGACCAACAGTACg        >  1:25033402‑M2/7‑67 (MQ=255)
                                                               cgctTGAGGATGCAAGTACGACGAAAAAGGGGATAGTACAGCTCAGCAGTGCGACCAACAGTACg        >  1:31656359‑M2/5‑65 (MQ=255)
                                                               cgctTGAGGATGCAAGTACGACGAAAAAGGGGATAGTACAGCTCAGCAGTGCGACCAACAGTACg        >  1:880334‑M2/5‑65 (MQ=255)
                                                               cgctTGAGGATGCAAGTACGACGAAAAAGGGGATAGTACAGCTCAGCAGTGCGACCAACAGTACGTc      <  1:31275359‑M2/63‑1 (MQ=255)
                                                               cgctTGAGGATGCAAGTACGACGAAAAAGGGGATAGTACAGCTCAGCAGTGCGACCAACAGTACGTc      <  1:1489625‑M2/63‑1 (MQ=255)
                                                                gctTGAGGATGCAAGTACGACGAAAAAGGGGATAGTACAGCTCAGCAGTGCGACCAACAGTACGTCTg    >  1:32833590‑M2/4‑68 (MQ=255)
                                                                  tTGAGGATGCAAGTACGACGAAAAAGGGGATAGTACAGCTCAGCAGTGCGACCAACAGTACGTCTGa   <  1:24177840‑M2/66‑1 (MQ=255)
                                                                   |                                                                  
AATCCGCGGCAACGCGCGCCGAGACAGCAGCTAAACGGGCAGAGGATATTGCATCCGCCGTGGCGCTTGAGGATGCAAGTACGACGAAAAAGGGGATAGTACAGCTCAGCAGTGCGACCAACAGTACGTCTGAA  >  CP009273/1424612‑1424745

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.