New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 1823129	205 (0.460)	13 (0.030)	7/94	NT	7.0%	coding (863/1479 nt)	astD	succinylglutamic semialdehyde dehydrogenase
	?	CP009273	= 1823150	175 (0.470)					coding (842/1479 nt)	astD	succinylglutamic semialdehyde dehydrogenase

TCATCCCAGTTGCCCGGCGTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/1823057‑1823129 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctgcgcccGCCGTTTATTGCTGAAAAGCGGGGCGCAGGGCGATGCGTTTCTTGCTCGTCTGGTTGCCGTCAGC  <  CP009273/1823150‑1823086                                                                                                                                            TCATCCCAGTTGCCCGGCGTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCT                                                                         >  1:20265689/1‑67  CATCCCTGTTGCCCGGCGTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGC                                                                       <  1:3056371/68‑1  CATCCCAGTTGCCCGGCGTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGC                                                                       <  1:17822883/68‑1   ATCCCAGTTGCCCGGCGTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGC                                                                       >  1:7943876/1‑67   ATCCCAGTTGCCCGGCGTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGC                                                                       >  1:13303862/1‑67   ATCCCAGTTGCCCGGCGTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCC                                                                          <  1:19655378/64‑1    TCCCAGTTGACCGGCGTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGC                                                                     <  1:11421524/68‑1     CCCAGTTGCCCGGCGTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGC                                                                     >  1:12687927/1‑67     CCCAGTTGCCCGGCGTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGC                                                                     >  1:35848368/1‑67     CCCAGTTGCCCGGCGTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGC                                                                     >  1:13136735/1‑67     CCCAGTTGCCCGGCGTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGC                                                                     >  1:34144343/1‑67     CCCAGTTGCCCGGCGTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGC                                                                     >  1:5215245/1‑67     CCCAGTTGCCCGGCGTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGC                                                                     >  1:10302638/1‑67     CCCAGTTGCCCGGCGTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGC                                                                     >  1:15546596/1‑67     CCCAGTTGCCCGGCGTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGC                                                                     >  1:20887250/1‑67      CCAGTTGCCCGGCGTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCC                                                                    >  1:14573357/1‑67      CCAGTTGCCCGGCGTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCC                                                                    >  1:2105113/1‑67      CCAGTTGCCCGGCGTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCC                                                                    >  1:20996341/1‑67         GTTGCCCGGCGTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCGCC                                                                >  1:16117076/1‑68              CCGGCGTTAATAGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCGCCGTTTA                                                           >  1:27772194/1‑68                        TCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCGCCGTTTATTGCTGAAAA                                                 >  1:28989147/1‑68                                    GGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCGCCGTTTATTGCTGAAAAGCGGGGCGCAGG                                     <  1:19591628/68‑1                                      CAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCGCCGTTTATTGCTGAAAAGCGGGGCGCAGGt                                    <  1:23574282/67‑2                                         CCAGACGAGCAAGAAACGCATCGCCCTGCGCCCGCCGGTTATTGGTGAAAAGCGGGGCGGAGGGCGAg                                >  1:34792077/1‑67                                            GACGAGCAAGAAACGCATCGCCCAGCGCCCGCCGGTTATTGCGGAAAAGCGGGGCGCAGGGGGATGgg                             >  1:32198373/1‑66                                              CGAGCAAGAAACGCATCGCCCTGCGCCCGGCGGTTATTGCTGAAAAGCGGGGCGCAGGGCGATGCGTT                           >  1:26279981/1‑68                                              CGAGCAAGAAACGCATCGCCCTGCGCCCGCCGTTTATTGCTGAAAAGCGGGGCGCAGGGCGATGCGTT                           >  1:4331966/1‑68                                              CGAGCAAGAAACGCATCGCCCTGCGCCCGCCGTTTATTGCTGAAAAGCGGGGCGCAGGGCGATGCGTT                           >  1:6815443/1‑68                                              CGAGCAAGAAACGCATCGCCCTGCGCCCGCCGGTTATTGGTGAAAAGCGGGGCGCAGGGCGATGGGTT                           >  1:24128922/1‑68                                              CGAGCAAGAAACGCATCGCCCTGCGCCCCCCGTTTATTGCTGAAAAGCGGGGCGCAGGGCGATGCGTT                           >  1:5435016/1‑68                                                       AACGCATCGCCCTGCGCCCGCCGTTTATTGCTGAAAAGCGGGGCGCAGGGCGATGCGTTTCTTGCTCG                  >  1:22197878/1‑68                                                        ACGCATCGCCCTGCGCCCGCCGTTTATTGCTGAAAAGCGGGGCGCAGGGCGATGCGTTTCTTGCTCG                  >  1:27200134/1‑67                                                            ATCGCCCTGCGCCCGCCGTTTATTGCTGAAAAGCGGGGCGCAGGGCGATGCGTTTCTTGCTCGTCTGG             >  1:11701218/1‑68                                                            ATCGCCCTGCGCCCGCCGTTTATTGCTGAAAAGCGGGGCGCAGGGCGATGCGTTTCTTGCTCGTCTGG             >  1:15988197/1‑68                                                            ATCGCCCTGCGCCCGCCGTTTATTGCTGAAAAGCGGGGCGCAGGGCGATGCGTTTCTTGCTCGTCAGG             >  1:3174745/1‑68                                                               GCCCTGCGCCCGCCGTTTATTGCTGAAAAGCGGGGCGCGGGGCGATGCGTTTCTTGCTCGTCTGGTT           >  1:2633039/1‑67                                                               GCCCTGCGCCCGCCGTTTATTGCTGAAAAGCGGGGCGCAGGGCGATGCGTTTCTTGCTCGTCTGGTT           >  1:8329688/1‑67                                                               GCCCTGCGCCCGCCGGTTATTGCTGAAAAGCGGGGCGCAGGGCGATGCGTTTCTTGCTCGTCTGGTT           >  1:8372111/1‑67                                                                CCCTGCGCCCGCCGTTTATTGCTGAAAAGCGGGGCGCAGGGCGATGGGTTTCTTGCTCGTCTGGTTG          >  1:17706081/1‑67                                                                CCCTGCGCCCGCCGTTTATTGCTGAAAAGCGGGGCGCAGGGCGATGCGTTTCTTGCTCGTCTGGTTG          >  1:36203884/1‑67                                                                 CCTGCGCCCGCCGTTTATTTCTGAAAAGCGGGGCGCAGGGCGATGCGTTTCTTGCTCGTCTGGTTGCC        >  1:14164485/1‑68                                                                 CCTGCGCCCGCCGTTTATTGCTGAAAAGGGGGGCGCAGGGGGCTGCGGTTCTTGCTGGTGTGGTTGCC        >  1:4367638/1‑68                                                                 CCTGCGCCCGCCGTTTATTGCTGAAAAGCTGGGCGCAGGGCGATGCGTTTCTTGCTCGTCTGGTTGCC        >  1:1122812/1‑68                                                                 CCTGCGCCCGCCGTTTATTGCTGAAAAGCGGGGCGCAGGGCGATGCGTTTCTTGCTCGTCTGGTTGCC        <  1:30314332/68‑1                                                                 CCTGCGCCCGCCGTTTATTGCTGAAAAGCGGGGCGCAGGGCGATGCGTTTCTTGCTCGTCTGGTTGCC        >  1:28305924/1‑68                                                                 CCTGCGCCCGCCGTTTATTGCTGAAAAGCGGGGCGCAGGGCGATGCGTTTCTTGCTCGTCTGGTTGCC        >  1:32086103/1‑68                                                                 CCTGCGCCCGCCGTTTATTGCTGAAAAGCGGGGCGCAGGGCGATGCGTTTCTTGCTCGTCTGGTTGCC        <  1:26991467/68‑1                                                                 CCTGCGCCCGCCGTTTATTGCTGAAAAGCGGGGCGCAGGGCGATGCGTTTCTTGCTCGTCTGGTTGCC        >  1:5578372/1‑68                                                                 CCTGCGCCCGCCGTTTATTGCTGAAAAGCGGGGCGCAGGGCGATGCGTTTCTTGCTCGTCTGGTTGCC        <  1:5615801/68‑1                                                                 CCTGCGCCCGCCGTTTATTGCTGAAAAGCGGGGCGCAGGGCGATGCGTTTCTTGCTCGTCTGGTTGCC        <  1:12319237/68‑1                                                                 CCTGCGCCCGCCGTTTATTGCTGAAAAGCGGGGCGCAGGGCGATGCGTTTCTTG                      >  1:6012854/1‑54                                                                 CCTGCGCCCGCCGTTTATTGCGGAAAAGCGGGGCGCAGGGCGATGCGTTTCTTGCTCGTCTGGTTGCC        <  1:22097386/68‑1                                                                 CCTGCGCCCGCCGGTTTTTGCTGAAAAGCGGGGCGCAGGGCGGTGCGTTTCTTGCGCGTCTGGTTGCC        >  1:18342845/1‑68                                                                  CTGCGCCCGCCGTTTATTGCTGAAAAGCGGGGCGCAGGGCGATGCGTTTCTTGCTCGTCTGGTTGCCG       >  1:13724540/1‑68                                                                   TGCGCCCGCCGTTTATTGCTGAAAAGCGGGGCGCAGGGCGATGCGTTTCTTGCTCGTCTGGTTGCCGT      <  1:9757080/68‑1                                                                   TGCGCCCGCCGTTTATTGCTGAAAAGCGGGGCGCAGGGCGATGCGTTTCTTGCTCGTCTGGTTGCCG       >  1:5408634/1‑67                                                                   TGCGCCCGCCGTTTATTGCTGAAAAGCGGGGCGCAGGGCGATGCGTTTCTTGCTCGTCTGGTTGCCG       >  1:6341060/1‑67                                                                   TGCGCCCGCCGTTTATTGCTGAAAAGCGGGGCGCAGGGCGATGCGTTTCTTGCTCGTCTGGTTGCCG       >  1:6874538/1‑67                                                                   TGCGCCCGCCGTTTATTGCTGAAAAGCGGGGCGCAGGGCGATGCGTTTCTTGCTCGTCTGGTTGCCG       >  1:26234850/1‑67                                                                   TGCGCCCGCCGTTTATTGCTGAAAAGCGGGGCGCAGGGCGATGCGTTTCTTGCTCGTCTGGTTGCCG       >  1:17590466/1‑67                                                                   TGCGCCCGCCGTTTATTGCTGAAAAGCGGGGCGCAGGGCGATGCGTTTCTTGCTCGTCTGGTTGCCG       >  1:17187613/1‑67                                                                   TGCGCCCGCCGTTTATTGCTGAAAAGCGGGGCGCAGGGCGATGCGTTTCTTGCTCGTCTGGTTGCCG       >  1:26644892/1‑67                                                                   TGCGCCCGCCGTTTATTGCTGAAAAGCGGGGCGCAGGGCGATGCGTTTCTTGCTCGTCTGGTTGCCG       >  1:13510396/1‑67                                                                   TGCGCCCGCCGTTTATTGCTGAAAAGCGGGGCGCAGGGCGATGCGTTTCTTGCTCGTCTGGTTGCCG       >  1:25065023/1‑67                                                                     CGCCCGCCGTTTATTGCTGAAAAGCGGGGCGCAGGGCGATGCGTTTCTTGCTCGTCTGGTTGCCGTCA    >  1:22292672/1‑68                                                                     CGCCCGCCGTTTATTGCTGAAAAGCGGGGCGCAGGGCGATGCGTTTCTTGCTCGTCTGGTTGCCGTCA    >  1:3639509/1‑68                                                                     CGCCCGCCGTTTATTGCTGAAAAGCGGGGCGCAGGGCGATGCGTTTCTTGCTCGTCTGGTTGCCGTCA    >  1:729367/1‑68                                                                     CGCCCGCCGTTTATTGCTGAAAAGCGGGGCGCAGGGCGATGCGTTTCTTGCTCGTCTGGTTGCCGTCA    >  1:28912745/1‑68                                                                      GCCCGCCGTTTATTGCTGAAAAGCGTGGCGCAGGGCGATGCGTTTCTTGCTCGTCTGGTTGCCGTCA    >  1:21960795/1‑67                                                                      GCCCGCCGTTTATTGCTGAAAAGCGGGGCTCAGGGCGATGCGTTTCTTGCTCGTCTGGTTGCCGTCA    >  1:9015612/1‑67                                                                      GCCCGCCGTTTATTGCTGAAAAGCGGGGCGCAGGGCGATGCGTTTCTTGCTCGTCTGGTTGCCGTCAG   <  1:32695733/68‑1                                                                      GCCCGCCGTTTATTGCTGAAAAGCGGGGCGCAGGGCGATGCGTTTCTTGCTCGTCTGGTTGCCGTCAG   <  1:23196247/68‑1                                                                      GCCCGCCGTTTATTGCTGAAAAGCGGGGCGCAGGGCGATGCGTTTCTTGCTCGTCTGGTTGCCGTCA    >  1:1292637/1‑67                                                                      GCCCGCCGTTTATTGCTGAAAAGCGGGGCGCAGGGCGATGCGTTTCTTGCTCGTCTGGTTGCCGTCA    <  1:12319821/67‑1                                                                      GCCCGCCGTTTATTGCTGAAAAGCGGGGCGCAGGGCGATGCGTTTCTTGCTCGTCTGGTTGCCGTCA    >  1:14882415/1‑67                                                                      GCCCGCCGTTTATTGCTGAAAAGCGGGGCGCAGGGCGATGCGTTTCTTGCTCGTCTGGTTGCCGTCA    >  1:9015632/1‑67                                                                      GCCCGCCGTTTATTGCTGAAAAGCGGGGCGCAGGGCGATGCGTTTCTTGCTCGTCTGGTTGCCGTCA    <  1:11073217/67‑1                                                                      GCCCGCCGTTTATTGCTGAAAAGCGGGGCGCAGGGCGATGCGTTTCTTGCTCGTCTGGTTGCCGTCA    >  1:6115465/1‑67                                                                      GCCCGCCGTTTATTGCTGAAAAGCGGGGCGCAGGGCGATGCGTTTCTTGCTCGTCTGGTTGCCGTCA    >  1:19721296/1‑67                                                                      GCCCGCCGTTTATTGCTGAAAAGCGGGGCGCAGGGCGATGCGTTTCTTGCTCGTCTGGTTGCCGTCA    >  1:3040487/1‑67                                                                      GCCCGCCGTTTATTGCTGAAAAGCGGGGCGCAGGGCGATGCGTTTCTTGCTCGTCTGGTTGCCGTCA    >  1:22032295/1‑67                                                                      GCCCGCCGTTTATTGCTGAAAAGCGGGGCGCAGGGCGATGCGTTTCTTGCTCGTCTGGTTGCCGTCA    >  1:4849862/1‑67                                                                      GCCCGCCGTTTATTGCTGAAAAGCGGGGCGCAGGGCGATGCGTTTCTTGCTCGTCTGGTTGCCGTCA    >  1:23308859/1‑67                                                                      GCCCGCCGTTTATTGCTGAAAAGCGGGGCGCAGGGCGATGCGTTTCTTGCTCGTCTGGTTGCCGTCA    >  1:35718903/1‑67                                                                      GCCCGCCGTTTATTGCTGAAAAGCGGGGCGCAGGGCGATGCGTTTCTTGCTCGTCTGGTTGCCGTCA    >  1:35062367/1‑67                                                                      GCCCGCCGTTTATTGCTGAAAAGCGGGGCGCAGGGCGATGCGTTTCTTGCTCGTCTGGTTGCCGTCA    >  1:23997616/1‑67                                                                      GCCCGCCGTTTATTGCTGAAAAGCGGGGCGCAGGGCGATGCGTTTCTTGCTCGTCTGGTTGCCGTCA    <  1:26025256/67‑1                                                                      GCCCGCCGTTTATTGCTGAAAAGCGGGGCGCAGGGCGATGCGTTTCTTGCTCGTCTGGTTGCCGTCA    <  1:3002996/67‑1                                                                      GCCCGCCGTTTATTGCTGAAAAGCGGGGCGCAGGGCGATGCGTTACTAGCTCGTCTGGTTGCCGTCA    >  1:22002794/1‑67                                                                      GCCCGCCGTTTATTGATGAAAAGCGGGGCGCAGGGCGATGCGTATCTTGCTAGTCTGGTTGACGTCA    >  1:30861813/1‑67                                                                       CCCGCCGTTTATTGCTGAAAAGCGGGGCGCAGGGCGATGCGTTTCTTGCTCGTCTGGTTGCCGTCAG   >  1:22397024/1‑67                                                                       CCCGCCGTTTATTGCTGAAAAGCGGGGCGCAGGGCGATGCGTTTCTTGCTCGTCTGGTTGCCGTCAG   >  1:18474957/1‑67                                                                       CCCGCCGTTTATTGCTGAAAAGCGGGGCGCAGGGCGATGCGTTTCTTGCTCGTCTGGTTGCCGTCAG   >  1:4279938/1‑67                                                                       CCCGCCGTTTATTGCTGAAAAGCGGGGCGCAGGGCGATGCGTTTCTTGCTCGTCTGGTTGCCGTCAG   >  1:25538440/1‑67                                                                        CCGCCGTTTATTGCTGAAAAGCGGGGCGCAGGGCGCTGCGTTTCTTGCTCGTCTGGTTGCCGTCAGC  >  1:34846586/1‑67                                                                        CCGCCGTTTATTGCTGAAAAGCGGGGCGCAGGGCGATGCGTTTCTTGCTCGTCTGGTTGCCGTCAGC  <  1:23089643/67‑1                                                                                                                                            TCATCCCAGTTGCCCGGCGTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/1823057‑1823129 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctgcgcccGCCGTTTATTGCTGAAAAGCGGGGCGCAGGGCGATGCGTTTCTTGCTCGTCTGGTTGCCGTCAGC  <  CP009273/1823150‑1823086

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.