New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 = 1823129205 (0.460)13 (0.030) 7/94 NT 7.0% coding (863/1479 nt) astD succinylglutamic semialdehyde dehydrogenase
?CP009273 = 1823150 175 (0.470)coding (842/1479 nt) astD succinylglutamic semialdehyde dehydrogenase

Only 100 of 473 total aligned reads displayed.

CAGTTGCCCGGCGTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAAT  >  CP009273/1823063‑1823196
                                                                  |                                                                   
    tGCCCGGCGTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCtt                                                                >  1:18418354/1‑68 (MQ=255)
    tGCCCGGCGTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCtt                                                                >  1:29175577/1‑68 (MQ=255)
    tGCCCGGCGTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCt                                                                 <  1:29618491/67‑1 (MQ=255)
    tGCCCGGCGTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCt                                                                 <  1:19247112/67‑1 (MQ=255)
       ccGGCGTTAATAGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCgccgttta                                                             >  1:27772194‑M1/1‑60 (MQ=255)
        cGGCGTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCa                                                            <  1:15390655/68‑1 (MQ=255)
           cGTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGc                                                          <  1:19755724/67‑1 (MQ=255)
           cGTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGc                                                          <  1:4749089/67‑1 (MQ=255)
           cGTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGc                                                          <  1:5491001/67‑1 (MQ=255)
           cGTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGc                                                          <  1:13246370/67‑1 (MQ=255)
            gTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCaa                                                        >  1:6595551/1‑68 (MQ=255)
            gTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCaa                                                        >  1:21872664/1‑68 (MQ=255)
            gTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCaa                                                        <  1:36606656/68‑1 (MQ=255)
            gTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCaa                                                        <  1:22271670/68‑1 (MQ=255)
                 tCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAAc                                                   >  1:13574316/1‑68 (MQ=255)
                 tCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAAc                                                   >  1:30106226/1‑68 (MQ=255)
                 tCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAAc                                                   >  1:33398165/1‑68 (MQ=255)
                   gctggctgACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAAcg                                                  >  1:3039368/1‑67 (MQ=255)
                        cTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCggg                                             >  1:22397024‑M2/1‑64 (MQ=255)
                         tGACGGCAACCAGACGAGCTAGTAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggc                                            >  1:22002794‑M2/1‑63 (MQ=255)
                            cGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggcgca                                         >  1:6874538‑M2/1‑60 (MQ=255)
                               cAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGt                                      <  1:32812407/67‑1 (MQ=255)
                               cAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGt                                      <  1:35229304/67‑1 (MQ=255)
                               cAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGt                                      <  1:34929418/67‑1 (MQ=255)
                               cAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGt                                      <  1:18545443/67‑1 (MQ=255)
                               cAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGt                                      <  1:3893428/67‑1 (MQ=255)
                               cAACCAGACGAGCAAGAAACCCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggcgcaggg                                      >  1:17706081‑M2/1‑57 (MQ=255)
                                 aCCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCa                                   >  1:1727791/1‑68 (MQ=255)
                                  ccTGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggcgcagggcgat                                  >  1:3174745‑M2/1‑54 (MQ=255)
                                  ccAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAg                                  <  1:4924233/68‑1 (MQ=255)
                                   cAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGc                                 >  1:35994467/1‑68 (MQ=255)
                                   cAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGc                                 <  1:3108724/68‑1 (MQ=255)
                                   cAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGc                                 <  1:17167898/68‑1 (MQ=255)
                                       cGAGCAAGAAACGCATCGCCCTGCGCCCggcggttattgctgaaaagcggggcgcagggcgatgcgtt                             >  1:26279981‑M1/1‑28 (MQ=255)
                                       cGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGtt                              <  1:26788159/67‑1 (MQ=255)
                                        gAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGa                            <  1:8579097/68‑1 (MQ=255)
                                         aGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGa                            >  1:7687235/1‑67 (MQ=255)
                                            aaGAAACGCGTCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCgg                        <  1:21235741/68‑1 (MQ=255)
                                            aaGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCg                         >  1:8811684/1‑67 (MQ=255)
                                            aaGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGAGGGCGCAGGTGCAGAGTAGACCg                         >  1:5634793/1‑67 (MQ=255)
                                             aGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGc                       <  1:16465288/68‑1 (MQ=255)
                                             aGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGc                       <  1:15137308/68‑1 (MQ=255)
                                             aGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGc                       <  1:24094264/68‑1 (MQ=255)
                                             aGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGc                       <  1:33848062/68‑1 (MQ=255)
                                             aGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGc                       <  1:2489006/68‑1 (MQ=255)
                                             aGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGc                       <  1:30528490/68‑1 (MQ=255)
                                                aaCGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCtgt                    >  1:20719532/1‑68 (MQ=255)
                                                aaCGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCtgt                    <  1:35860691/68‑1 (MQ=255)
                                                aaCGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCtgt                    >  1:15955945/1‑68 (MQ=255)
                                                 aCGCATCGCCCTGCGCCCgccgtttattgctgaaaagcggggcgcagggcgatgcgtttcttgctcg                    >  1:27200134‑M1/1‑18 (MQ=255)
                                                  cGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCtgtg                   >  1:11510432/1‑67 (MQ=255)
                                                  cGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGa                  <  1:26583117/68‑1 (MQ=255)
                                                     ctcGCCCTCCGCCCCGCTTTTCACCAATAACCGGCgggcgcagggcgatgcgtttcttgctcgtctgg               >  1:34792077‑M2/2‑35 (MQ=255)
                                                     aTCGCCCTGCGCCCgccgtttattgctgaaaagcggggcgcagggcgatgcgtttcttgctcgtctgg               >  1:11701218‑M1/1‑14 (MQ=255)
                                                     aTCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACac               >  1:30851910/1‑67 (MQ=255)
                                                     aTCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACaa               >  1:33968811/1‑68 (MQ=255)
                                                     aTCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGGGACac               >  1:9701389/1‑67 (MQ=255)
                                                      tCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACaaa              <  1:28438656/68‑1 (MQ=255)
                                                        gCCCTGCGCCCgccggttattgctgaaaagcggggcgcagggcgatgcgtttcttgctcgtctggtt             >  1:8372111‑M1/1‑11 (MQ=255)
                                                        gCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACg            <  1:10384422/68‑1 (MQ=255)
                                                         acctGCGCCCCGCTTTTCAGCAATAAACGGCgggcgcagggcgatgcgtttcttgctcgtctggttg            <  1:23574282‑M2/66‑37 (MQ=255)
                                                         aCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACg            <  1:26683776‑M1/66‑1 (MQ=255)
                                                          ccTGCGCCCgccgtttattgctgaaaaggggggcgcagggggctgcggttcttgctggtgtggttgcc          >  1:4367638‑M1/1‑9 (MQ=255)
                                                          ccTGCGCCCgccgtttattgctgaaaagcggggcgcagggcgatgcgtttcttgctcgtctggttgcc          >  1:28305924‑M1/1‑9 (MQ=255)
                                                          ccTGCGCCCgccgtttattgctgaaaagcggggcgcagggcgatgcgtttcttgctcgtctggttgcc          <  1:26991467‑M1/68‑60 (MQ=255)
                                                          ccTGCGCCCgccgtttattgctgaaaagcggggcgcagggcgatgcgtttcttgctcgtctggttgcc          >  1:32086103‑M1/1‑9 (MQ=255)
                                                          ccTGCGCCCgccgtttattgctgaaaagcggggcgcagggcgatgcgtttcttg                        >  1:6012854‑M1/1‑9 (MQ=255)
                                                          ccTGCGCCCgccgtttattgcggaaaagcggggcgcagggcgatgcgtttcttgctcgtctggttgcc          <  1:22097386‑M1/68‑60 (MQ=255)
                                                          CCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGcc          >  1:12311536‑M1/1‑68 (MQ=255)
                                                          CCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGcc          <  1:24142129‑M1/68‑1 (MQ=255)
                                                           CTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCg         >  1:14030786‑M1/1‑68 (MQ=255)
                                                            tGCGCCCgccgtttattgctgaaaagcggggcgcagggcgatgcgtttcttgctcgtctggttgccg         >  1:6341060‑M1/1‑7 (MQ=255)
                                                            tGCGCCCgccgtttattgctgaaaagcggggcgcagggcgatgcgtttcttgctcgtctggttgccg         >  1:5408634‑M1/1‑7 (MQ=255)
                                                            TGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGCCCGGCTGGGACAAACGCCg         <  1:9180853‑M1/67‑1 (MQ=255)
                                                            TGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCg         <  1:11148864‑M1/67‑1 (MQ=255)
                                                            TGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCg         <  1:12326740‑M1/67‑1 (MQ=255)
                                                            TGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCg         <  1:18677456‑M1/67‑1 (MQ=255)
                                                            TGCGCCCCGCGTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCg         <  1:19622548‑M1/67‑1 (MQ=255)
                                                             GCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCg         <  1:16743742‑M1/66‑1 (MQ=255)
                                                             GCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGAc       >  1:12970548‑M1/1‑68 (MQ=255)
                                                              cgcccgccgtttattgctgaaaagcggggcgcagggcgatgcgtttcttgctcgtctggttgccgtca      >  1:729367‑M1/1‑5 (MQ=255)
                                                              CGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCg         <  1:28684596‑M1/65‑1 (MQ=255)
                                                               gcccgccgtttattgctgaaaagcggggcgcagggcgatgcgtttcttgctcgtctggttgccgtcag     <  1:23196247‑M1/68‑65 (MQ=255)
                                                               gcccgccgtttattgctgaaaagcggggcgcagggcgatgcgtttcttgctcgtctggttgccgtca      <  1:26025256‑M1/67‑64 (MQ=255)
                                                               gcccgccgtttattgctgaaaagcggggcgcagggcgatgcgtttcttgctcgtctggttgccgtca      >  1:14882415‑M1/1‑4 (MQ=255)
                                                               GCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGCCTg     <  1:25253466‑M1/68‑1 (MQ=255)
                                                               GCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTg     >  1:10055573‑M1/1‑68 (MQ=255)
                                                               GCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTg     <  1:13723632‑M1/68‑1 (MQ=255)
                                                               GCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTg     <  1:4242874‑M1/68‑1 (MQ=255)
                                                               GCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTg     <  1:18963480‑M1/68‑1 (MQ=255)
                                                               GCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTg     <  1:36285415‑M1/68‑1 (MQ=255)
                                                               GCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTg     <  1:2295308‑M1/68‑1 (MQ=255)
                                                               GCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTg     <  1:32614859‑M1/68‑1 (MQ=255)
                                                               GCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTCTGACAAACGCCGACTg     <  1:14314603‑M1/68‑1 (MQ=255)
                                                                cccgccgtttattgctgaaaagcggggcgcagggcgatgcgtttcttgctcgtctggttgccgtcag     >  1:25538440‑M1/1‑3 (MQ=255)
                                                                CCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGa    <  1:34572151‑M1/68‑1 (MQ=255)
                                                                 CCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGaa   <  1:32167314‑M1/68‑1 (MQ=255)
                                                                 CCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGa    >  1:23432985‑M1/1‑67 (MQ=255)
                                                                 CCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGa    >  1:1281066‑M1/1‑67 (MQ=255)
                                                                  CCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAAt  >  1:26336482‑M1/1‑68 (MQ=255)
                                                                  |                                                                   
CAGTTGCCCGGCGTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAAT  >  CP009273/1823063‑1823196

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.