New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 = 1823129205 (0.460)13 (0.030) 7/94 NT 7.0% coding (863/1479 nt) astD succinylglutamic semialdehyde dehydrogenase
?CP009273 = 1823150 175 (0.470)coding (842/1479 nt) astD succinylglutamic semialdehyde dehydrogenase

Only 100 of 375 total aligned reads displayed.

TGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGTCAGATGGACAGCCGCGT  >  CP009273/1823084‑1823216
                                                                  |                                                                  
tggctgACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAAcggc                                                                    <  1:18938765/67‑1 (MQ=255)
   cTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCggg                                                                 >  1:4279938‑M2/1‑64 (MQ=255)
    tGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggc                                                                >  1:23308859‑M2/1‑63 (MQ=255)
    tGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggc                                                                >  1:4849862‑M2/1‑63 (MQ=255)
    tGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggc                                                                >  1:6115465‑M2/1‑63 (MQ=255)
    tGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggc                                                                <  1:12319821‑M2/67‑5 (MQ=255)
    tGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggc                                                                <  1:11073217‑M2/67‑5 (MQ=255)
    tGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGAGCCCCGCTTTTCAGCAATAAACGGCgggc                                                                >  1:9015612‑M2/1‑63 (MQ=255)
       cGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggcgcag                                                            >  1:13724540‑M2/1‑60 (MQ=255)
       cGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggcgca                                                             >  1:17590466‑M2/1‑60 (MQ=255)
        ggCAACCAGACGCGCAAGAAACGCACCGCCCTGCGCCCCGCTTTTCAGCAAAAACCGGCgggcgcagg                                                           >  1:18342845‑M2/1‑59 (MQ=255)
        ggCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggcgcagg                                                           >  1:32086103‑M2/1‑59 (MQ=255)
        ggCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggcgcagg                                                           >  1:5578372‑M2/1‑59 (MQ=255)
        ggCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggcgcagg                                                           <  1:30314332‑M2/68‑10 (MQ=255)
        ggCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGAAATAAACGGCgggcgcagg                                                           >  1:14164485‑M2/1‑59 (MQ=255)
        ggCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCAGCTTTTCAGCAATAAACGGCgggcgcagg                                                           >  1:1122812‑M2/1‑59 (MQ=255)
          cAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGt                                                          <  1:35935255/67‑1 (MQ=255)
          cAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGt                                                          <  1:22159206/67‑1 (MQ=255)
          cAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGt                                                          <  1:18545443/67‑1 (MQ=255)
          cAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGt                                                          <  1:24240993/67‑1 (MQ=255)
           aaCCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAACCGGCgggcgcagggc                                                         >  1:8372111‑M2/1‑56 (MQ=255)
             ccAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggcgcagggcgat                                                      >  1:15988197‑M2/1‑54 (MQ=255)
             ccAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggcgcagggcgat                                                      >  1:11701218‑M2/1‑54 (MQ=255)
              cAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGc                                                     >  1:3947920/1‑68 (MQ=255)
              cAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGc                                                     <  1:3108724/68‑1 (MQ=255)
                  cGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATATACGGCGGGCGCAGGTGCAGCGtt                                                  <  1:33107621/67‑1 (MQ=255)
                  cGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCg                                                    <  1:11939696/65‑1 (MQ=255)
                  cGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTg                                                 >  1:4385132/1‑68 (MQ=255)
                   gAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGa                                                <  1:8579097/68‑1 (MQ=255)
                    aGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGa                                                >  1:28564195/1‑67 (MQ=255)
                       aaGAAACGCGTCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCgg                                            <  1:21235741/68‑1 (MQ=255)
                       aaGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCgg                                            <  1:798523/68‑1 (MQ=255)
                        aGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATCAACGGCGGGCGCAGGTGCAGCGTTGACCGGc                                           <  1:24108074/68‑1 (MQ=255)
                        aGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGc                                           <  1:2489006/68‑1 (MQ=255)
                        aGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGc                                           <  1:26196292/68‑1 (MQ=255)
                        aGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGc                                           <  1:28319427/68‑1 (MQ=255)
                        aGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGc                                           <  1:28232372/68‑1 (MQ=255)
                        aGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGc                                           <  1:33848062/68‑1 (MQ=255)
                        aGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGc                                           <  1:21560488/68‑1 (MQ=255)
                        aGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGc                                           <  1:19743574/68‑1 (MQ=255)
                        aGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGc                                           <  1:17251574/68‑1 (MQ=255)
                        aGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGc                                           <  1:14693700/68‑1 (MQ=255)
                           aaCGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCtgt                                        >  1:20719532/1‑68 (MQ=255)
                             cGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGa                                      <  1:25906082/68‑1 (MQ=255)
                             cGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGa                                      <  1:15007867/68‑1 (MQ=255)
                             cGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGa                                      <  1:26583117/68‑1 (MQ=255)
                             cGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGCCGGGCGCAGGTGCAGCGTTGACCGGCTGTGa                                      <  1:25071077/68‑1 (MQ=255)
                                ctcGCCCTCCGCCCCGCTTTTCACCAATAACCGGCgggcgcagggcgatgcgtttcttgctcgtctgg                                   >  1:34792077‑M2/2‑35 (MQ=255)
                                aTCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACaa                                   >  1:33968811/1‑68 (MQ=255)
                                aTCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGGGACac                                   >  1:9701389/1‑67 (MQ=255)
                                 tCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACaaa                                  <  1:26780111/68‑1 (MQ=255)
                                   gCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAAc                                 >  1:5932959/1‑67 (MQ=255)
                                   gCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAAc                                 >  1:30212811/1‑67 (MQ=255)
                                   gCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACg                                <  1:10384422/68‑1 (MQ=255)
                                    cccTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACg                                >  1:36569372/1‑67 (MQ=255)
                                    cccTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACg                                >  1:21998149/1‑67 (MQ=255)
                                    acctGCGCCCCGCTTTTCAGCAATAAACGGCgggcgcagggcgatgcgtttcttgctcgtctggttg                                <  1:23574282‑M2/66‑37 (MQ=255)
                                    aCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGCCCGGCTGTGCCAAACg                                <  1:25692842‑M1/66‑1 (MQ=255)
                                     ccTGCGCCCCGCTTTTCAGCAATAAACGGCgggcgcagggcgatgcgtttcttgctcgtctggttgcc                              <  1:19591628‑M2/68‑39 (MQ=255)
                                     CCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGCCCGGCTGGGGCAAACGcc                              <  1:3076748‑M1/68‑1 (MQ=255)
                                       TGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCg                             <  1:3515971‑M1/67‑1 (MQ=255)
                                        GCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGAc                           >  1:35527911‑M1/1‑68 (MQ=255)
                                        GCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGAc                           >  1:12970548‑M1/1‑68 (MQ=255)
                                         CGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCg                             <  1:28684596‑M1/65‑1 (MQ=255)
                                          GCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGCCTg                         <  1:25253466‑M1/68‑1 (MQ=255)
                                          GCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTg                         <  1:13088140‑M1/68‑1 (MQ=255)
                                          GCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTg                         <  1:26672130‑M1/68‑1 (MQ=255)
                                          GCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTg                         >  1:10055573‑M1/1‑68 (MQ=255)
                                          GCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTg                         <  1:24704774‑M1/68‑1 (MQ=255)
                                          GCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTg                         <  1:36285415‑M1/68‑1 (MQ=255)
                                          GCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTg                         <  1:32673796‑M1/68‑1 (MQ=255)
                                          GCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTg                         <  1:23494159‑M1/68‑1 (MQ=255)
                                          GCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTg                         <  1:17146727‑M1/68‑1 (MQ=255)
                                          GCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTAACAAACGCCGACTg                         <  1:34510282‑M1/68‑1 (MQ=255)
                                           CCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGa                        <  1:29698992‑M1/68‑1 (MQ=255)
                                            CCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGaa                       <  1:32167314‑M1/68‑1 (MQ=255)
                                            CCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGa                        >  1:16341172‑M1/1‑67 (MQ=255)
                                            CCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGa                        >  1:223928‑M1/1‑67 (MQ=255)
                                             CCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAAt                      >  1:26336482‑M1/1‑68 (MQ=255)
                                               gCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATgg                    >  1:5382414/1‑68 (MQ=255)
                                                 ttttCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGt                   <  1:27393248/67‑1 (MQ=255)
                                                  tttCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGTCa                 <  1:3858647/68‑1 (MQ=255)
                                                  tttCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGTCa                 <  1:27202329/68‑1 (MQ=255)
                                                  tttCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGTCa                 <  1:31391337/68‑1 (MQ=255)
                                                    tCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGTCAGa               >  1:3611446/1‑68 (MQ=255)
                                                    tCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGTCAGa               <  1:29044481/68‑1 (MQ=255)
                                                     cAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGTCAGAt              <  1:19123791/68‑1 (MQ=255)
                                                     cAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGTCAGAt              <  1:15403169/68‑1 (MQ=255)
                                                       gCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGTCAGATgg            >  1:6458293/1‑68 (MQ=255)
                                                       gCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGTCAGATgg            >  1:32482268/1‑68 (MQ=255)
                                                         aaTAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCTGACTGAATGGTCAGATGGAc          >  1:34963412/1‑68 (MQ=255)
                                                         aaTAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGTCAGATGGAc          >  1:22439139/1‑68 (MQ=255)
                                                            aaaCGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGTCAGATGGACAGc       <  1:22937794/68‑1 (MQ=255)
                                                              aCGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGTCAGATGGACAGcc      >  1:31859272/1‑67 (MQ=255)
                                                              aCGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGTCAGATGGACAGcc      >  1:7155106/1‑67 (MQ=255)
                                                              aCGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGTCAGATGGACAGcc      >  1:729996/1‑67 (MQ=255)
                                                              aCGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGTCAGATGGACAGcc      >  1:13521770/1‑67 (MQ=255)
                                                               cggcggGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGTCAGATGGACAGCcgc    <  1:12699630/68‑1 (MQ=255)
                                                                 gcgggcgCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGTCAGATGGACAGCcgcg   >  1:26972433/1‑67 (MQ=255)
                                                                  cgggcgCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGTCAGATGGACAGCCGCGt  <  1:30437529/67‑1 (MQ=255)
                                                                  |                                                                  
TGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGTCAGATGGACAGCCGCGT  >  CP009273/1823084‑1823216

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.