| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 2006338 = | 414 (0.930) | 20 (0.050) | 13/92 | NT | 6.1% | coding (158/315 nt) | fliE | flagellar basal‑body component |
| ? | CP009273 | 2006392 = | 280 (0.770) | coding (104/315 nt) | fliE | flagellar basal‑body component | |||||
Only 100 of 127 total aligned reads displayed.
CGCAACCGACCATTAGTTTTGCCGGGCAGCTGCACGCCGCGCTCGATCGCATTAGTGATACACAAACAGCTGCCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/2006413‑2006338‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagctgcccgGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACTCATCGCCGTAGCCTGTAACT > CP009273/2006392‑2006458 CGCAACCGACCATTAGTTTTGCCGGGCAGCTGCACGCCGCGCTCGATCGCATTAGTGATACACAAACA > 1:9800104/1‑68CGCAACCGACCATTAGTTTTGCCGGGCAGCTGCACGCCGCGCTCGATCGCATTAGTGATACACAAACA > 1:18351264/1‑68CGCAACCGACCATTAGTTTTGCCGGGCAGCTGCACGCCGCGCTCGATCGCATTAGTGATACACAAACA < 1:19908653/68‑1CGCAACCGACCATTAGTTTTGCCGGGCAGCTGCACGCCGCGCTCGATCGCATTAGTGATACACAAACA > 1:21185475/1‑68CGCAACCGACCATTAGTTTTGCCGGGCAGCTGCACGCCGCGCTCGATCGCATTAGTGATACACAAACA > 1:23457846/1‑68CGCAACCGACCATTAGTTTTGCCGGGCAGCTGCACGCCGCGCTCGATCGCATTAGTGATACACAAACA > 1:32747262/1‑68 GCAACCGACCATTAGTTTTGCCGGGCAGCTGCACGCCGCGCTCGATCGCATTAGTGATACACAAACAG < 1:13238985/68‑1 AACCGACCATTAGTTTTGCCGGGCAGCTGCACGCCGCGCTCGATCGCATTAGTGATACACAAACAGCT < 1:27026237/68‑1 AACCGACCATTAGTTTTGCCGGGCAGCTGCACGCCGCGCTCGATCGCATTAGTGATACACAAACAGC < 1:29165377/67‑1 ACCGACCATTAGTTTTGCCGGGCAGCTGCACGCCGCGCTCGATCGCATTAGTGATACACAAACAGCT > 1:22893139/1‑67 CCGACCATTAGTTTTGCCGGGCAGCTGCACGCCGCGCTCGATCGCATTAGTGATACACAAACAGCTGC < 1:15643610/68‑1 CCGACCATTAGTTTTGCCGGGCAGCTGCACGCCGCGCTCGATCGCATTAGTGATACACAAACAGCTG > 1:4466499/1‑67 CCGACCATTAGTTTTGCCGGGCAGCTGCACGCCGCGCTCGATCGCATTAGTGATACACAAACAGCTG > 1:8904705/1‑67 CGACCATTAGTTTTGCCGGGCAGCTGCACGCCGCGCTCGATCGCATTAGTGATACACAAACAGCTGCC < 1:10212831/68‑1 CGACCATTAGTTTTGCCGGGCAGCTGCACGCCGCGCTCGATCGCATTAGTGATACACAAACAGCTGCC < 1:19224962/68‑1 CCATTAGTTTTGCCGGGCAGCTGCACGCCGCGCTCGATCGCATTAGTGATACACAAACAGCTGCCCG < 1:28279934/67‑1 CATTCGTTTTGCCGGGCAGCTGCACGCCGCGCGCGATCGCATTAGTGATACACAAACCGCTGCCCGGC < 1:22580296/68‑1 AGTTTTGCCGGGCAGCTGCACGCCGCGCTCGATCGCATTAGTGATACACAAACAGCTGCCCGGCAAAA < 1:21348654/68‑1 AGTTTTGCCGGGCAGCTGCACGCCGCGCTCGATCGCATTAGTGATACACAAACAGCTGCCCGGCAAAA < 1:19637173/68‑1 TTTGCCGGGCAGCTGCACGCCGCGCTCGATCGCATTAGTGATACACAAACCGCTGCCCGGCAAAAC < 1:26654615/66‑1 TTTGCCGGGCAGCTGCACGCCGCGCTCGATCGCATTAGTGATACACAAACAGCTGCCCGGCAAAAC < 1:28202766/66‑1 TTTGCCGGGCAGCTGCACGCCGCGCTCGATCGCATTAGTGATACACAAACAGCTGCCCGGCAAAAC < 1:28951922/66‑1 CAGCTGCACGCCGCGCTCGATCGCATTAGTGATACACAAACAGCTGCCCGGCAAAACTAATGGTCGG < 1:17550930/67‑1 TGCACGCCGTGCGCGATCGCATTAGTGAAACACAAACAGCTGCCCGGCAAAACTAATGGGCGGTTGC < 1:3811220/67‑1 TGCACGCCGCGCTCGATCGCATTAGTGATACACAAACAGCTGCCCGGCAAAACTAATGGTCGGTT < 1:6831431/65‑1 cCACGCCGCGCTCGATCGCATTATTGATACCCAAACAGCTGCCCGGGAAAACTAATGGTCGGTTGCG < 1:29685216/66‑1 ACGCCGCGCTCGAGCGCATTAGTGATACACAAACAGCCCCCCGGCAAAACTAATGGTCGGTTGCGGC < 1:6649096/67‑1 ACGCCGCGCGCGATCGCATTAGTGAAACACAAACAGCTCCCCGGCAAAACTAATGGTCGGTTGCGGC < 1:18357924/67‑1 CGCCGCGCTCGATCGCATTAGTGATACACAAACAGCTGCCCGGCAAAACTAATGGTCGGTTGCGGCAG < 1:19705748/68‑1 CGCGCTCGAGCGCATTAGTGATACACAAACCGCTCCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGA < 1:32760514/68‑1 GCTCGATCGCAATAGTGATACACAAACAGCTGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATT < 1:16337752/67‑1 gCGATCGCATTAGTGACACACAAACAGCTGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCC < 1:27046099/66‑1 AGCTGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACTCATCGCCGTAG > 1:31948113/1‑67 AGCTGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACTCATCGCCGTAG < 1:2977258/67‑1 AGCTGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACTCATCGCCGTAG > 1:11842435/1‑67 AGCTGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACTCATCGCCGTAG < 1:24311094/67‑1 AGCTGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACTCATCGCCGTAG > 1:18528585/1‑67 AGCTGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACTCATCGCCGTAG < 1:17047558/67‑1 GCTGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCCCGCGCACTCATCGCCGTAGCC > 1:33864789/1‑68 GCTGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACTCATCGCCGTAG > 1:25607348/1‑66 GCTGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACTCATCGCCGTAG > 1:35410294/1‑66 GCTGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACTCATCGCCGTAG > 1:13724925/1‑66 GCTGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACTCATCGCCGTAG > 1:330480/1‑66 GCTGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACGCATCGCCGTAt > 1:1091421/1‑65 TGCCCGGCATAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACTCATCGCCGCAGC < 1:35973225/65‑1 TGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACTCATCGCCGTAGCCT < 1:36203424/67‑1 TGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACTCATCGCCGTAGCCT < 1:29524125/67‑1 TGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACTCATCGCCGTAGCC < 1:1351604/66‑1 TGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACTCATCGCCGTAGCC < 1:34368665/66‑1 TGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACTCATCGCCGTAGC < 1:10827451/65‑1 TGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACTCATCGCCGTAGC < 1:32767477/65‑1 TGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACTCATCGCCGTAGC < 1:11731517/65‑1 TGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACTCATCGCCGTAGC < 1:33850802/65‑1 TGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACTCATCGCCGTAGC < 1:32417800/65‑1 TGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACTCATCGCCGTAGC < 1:32044490/65‑1 TGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACTCATCGCCGTAGC < 1:10484440/65‑1 TGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACTCATCGCCGTAGC < 1:9015819/65‑1 TGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACTCATCGCCGTAGC < 1:35041839/65‑1 TGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACTCATCGCCGTAGC < 1:6670704/65‑1 TGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACTCATCGCCGTAGC < 1:36079153/65‑1 TGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACTCATCGCCGTAGC < 1:7305770/65‑1 TGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACTCATCGCCGTAGC < 1:6927102/65‑1 TGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACTCATCGCCGTAGC < 1:4964417/65‑1 TGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACTCATCGCCGTAGC < 1:6192144/65‑1 TGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACTCATCGCCGTAGC < 1:6847155/65‑1 TGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACTCATCGCCGTAGC < 1:6504911/65‑1 TGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACTCATCGCCGTAGC < 1:30955436/65‑1 TGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACTCATCGCCGTAGC < 1:16039649/65‑1 TGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACTCATCGCCGTAGC < 1:22569130/65‑1 TGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACTCATCGCCGTAGC < 1:15106411/65‑1 TGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACTCATCGCCGTAGC < 1:15062454/65‑1 TGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACTCATCGCCGTAGC < 1:25282097/65‑1 TGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACTCATCGCCGTAGC < 1:13653330/65‑1 TGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACTCATCGCCGTAGC < 1:27278539/65‑1 TGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACTCATCGCCGTAGC < 1:2771226/65‑1 TGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACTCATCGCCGTAGC < 1:31395795/65‑1 TGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACTCATCGCCGTAGC < 1:30673930/65‑1 TGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACTCATCGCCGTAGC < 1:11736592/65‑1 TGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACTCATCGCCGTAGC < 1:29371489/65‑1 TGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACTCATCGCCGTAGC < 1:30006103/65‑1 TGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACTCATCGCCGTAGC < 1:30638452/65‑1 TGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACTCATCGCCGTAG > 1:7897037/1‑64 TGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACTCATCGCCGTAG > 1:16058627/1‑64 TGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACTCATCGCCGTAG > 1:6823821/1‑64 TGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACTCATCGCCGTAG > 1:20518064/1‑64 TGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACTCATCGCCGTAG > 1:30386873/1‑64 TGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACTCATCGCCGTAG > 1:30020036/1‑64 TGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACTCATCGCCGTAG > 1:8410436/1‑64 TGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACTCATCGCCGTAG > 1:16648373/1‑64 TGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACTCATCGCCGTAG > 1:27776632/1‑64 TGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACTCATCGCCGTAG > 1:3550843/1‑64 TGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCACACTCATCGCCGTAGC < 1:11796246/65‑1 TGCCCGGCAAAACTAATGGGCGGGTGCGGCAGTGATTCCTGCGCACGCGCACTCATCGCCGTAGC < 1:28077632/65‑1 GCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACTCATCGCCGTAGCCTGT < 1:1517819/68‑1 GCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACTCATCGCCGTAGCCTGT < 1:7462621/68‑1 GCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACTCATCGCCGTAGCCTGT < 1:16913961/68‑1 ccgGGCAAAACTAAAGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACTCATCGCCGTAGCCTGT < 1:36633982/64‑1 CCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACTCATCGCCGTAGCCTGTA > 1:18983466/1‑67 GGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACTCATCGCCGTAGCCTGTAACT < 1:26586414/68‑1 GGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACTCATCGCCGTAGCCTGTAACT < 1:27602278/68‑1 CGCAACCGACCATTAGTTTTGCCGGGCAGCTGCACGCCGCGCTCGATCGCATTAGTGATACACAAACAGCTGCCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/2006413‑2006338‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagctgcccgGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACTCATCGCCGTAGCCTGTAACT > CP009273/2006392‑2006458 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |