| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 2006338 = | 414 (0.930) | 20 (0.050) | 13/92 | NT | 6.1% | coding (158/315 nt) | fliE | flagellar basal‑body component |
| ? | CP009273 | 2006392 = | 280 (0.770) | coding (104/315 nt) | fliE | flagellar basal‑body component | |||||
Only 100 of 555 total aligned reads displayed.
CATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACTAATGCGATCGAGCGCGGCGTGCAGCTGCCCGGCAAAACTAATGG > CP009273/2006271‑2006404 | cATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCtgcgtgc > 1:4045080/1‑68 (MQ=255) atatCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCtgcgtgcg > 1:30056395/1‑68 (MQ=255) atatCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCtgcgtgcg > 1:30695082/1‑68 (MQ=255) atatCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCtgcgtgcg > 1:15927677/1‑68 (MQ=255) atatCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCtgcgtgc < 1:21514679/67‑1 (MQ=255) tatCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCgg < 1:35853049/68‑1 (MQ=255) tatCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCgg < 1:33399056/68‑1 (MQ=255) tatCCGTCATCACATCGTTTCACGCCACGCCGGGCTCACCGAGAGGGAATTTTTCAGCCTGCGTGCgg < 1:5782447/68‑1 (MQ=255) tacaggctacggcgatgagtgcgcgtgcgcaggaatcactgccgcaaccgaccattagttttgcCgg > 1:18983466‑M1/65‑67 (MQ=255) atCGGTCATCACATCGTTTAACGCCACGCCGGGTTCCCCGAGAGTGAATTTTTCTGCCTGCGTGCgg > 1:10978677/1‑67 (MQ=255) acaggctacggcgatgagtgcgcgtgcgcaggaatcactgccgcaaccgacctttagttttgcccgg < 1:36633982‑M1/4‑4 (MQ=255) acaggctacggcgatgagtgcgcgtgcgcaggaatcactgccgcaaccgaccattagttttgcCGGGc < 1:16913961‑M1/5‑1 (MQ=255) cGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCa < 1:17602063/68‑1 (MQ=255) ggTCATCACATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCa > 1:16315904/1‑67 (MQ=255) ggTCATCACATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCa > 1:18450355/1‑67 (MQ=255) ggTCATCACATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCa > 1:33795878/1‑67 (MQ=255) ggTCATCACATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAg < 1:24011179/68‑1 (MQ=255) ggTCATCACATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAg < 1:19635563/68‑1 (MQ=255) tcatcaCATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAga < 1:7025908/67‑2 (MQ=255) gctacggcgatgagtgcgcgtgcgcaggaatcactgccgcaaccgaccattagttttgcCGGGCa < 1:30955436‑M1/6‑1 (MQ=255) gctacggcgatgagtgcgcgtgcgcaggaatcactgccgcaaccgaccattagttttgcCGGGCa < 1:9015819‑M1/6‑1 (MQ=255) gctacggcgatgagtgcgcgtgcgcaggaatcactgccgcaaccgaccattagttttgcCGGGCa < 1:6847155‑M1/6‑1 (MQ=255) gctacggcgatgagtgcgcgtgcgcaggaatcactgccgcaaccgaccattagttttgcCGGGCa < 1:30638452‑M1/6‑1 (MQ=255) gctacggcgatgagtgcgcgtgcgcaggaatcactgccgcaaccgaccattagttttgcCGGGCa < 1:15106411‑M1/6‑1 (MQ=255) gctacggcgatgagtgcgcgtgcgcaggaatcactgccgcaaccgaccattagttttgcCGGGCa < 1:13653330‑M1/6‑1 (MQ=255) gctacggcgatgagtgcgcgtgcgcaggaatcactgccgcaaccgaccattagttttgcCGGGCa < 1:16422117‑M1/6‑1 (MQ=255) gctacggcgatgagtgcgcgtgcgcaggaatcactgccgcaaccgaccattagttttgcCGGGCa < 1:32044490‑M1/6‑1 (MQ=255) gctacggcgatgagtgcgcgtgcgcaggaatcactgccgcaaccgaccattagttttgcCGGGCa < 1:15181201‑M1/6‑1 (MQ=255) ctacggcgatgagtgcgcgtgcgcaggaatcactgccgcaaccgaccattagttttgcCGGGCa > 1:8410436‑M1/59‑64 (MQ=255) ctacggcgatgagtgcgcgtgcgcaggaatcactgccgcaaccgaccattagttttgcCGGGCa > 1:7897037‑M1/59‑64 (MQ=255) ctacggcgatgagtgcgcgtgcgcaggaatcactgccgcaaccgaccattagttttgcCGGGCAGc > 1:32841712‑M1/59‑66 (MQ=255) ctacggcgatgagtgcgcgtgcgcaggaatcactgccgcaaccgaccattagttttgcCGGGCAGCt > 1:11842435‑M1/59‑67 (MQ=255) catcaCATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCt < 1:7571357/67‑1 (MQ=255) catcaCATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTg < 1:31374529/68‑1 (MQ=255) catcaCATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTg < 1:22316807/68‑1 (MQ=255) atcaCATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGt < 1:14059819/68‑1 (MQ=255) atcaCATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGt < 1:35039275/68‑1 (MQ=255) atcaCATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGt < 1:14206470/68‑1 (MQ=255) tcaCATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGtt > 1:9585818/1‑68 (MQ=255) tcaCATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGtt < 1:21849608/68‑1 (MQ=255) acaTCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTtg > 1:6226435/1‑68 (MQ=255) caTCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTtgt < 1:12105211/68‑1 (MQ=255) caTCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTtgt < 1:31690548/68‑1 (MQ=255) caTCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTtgt < 1:14836161/68‑1 (MQ=255) caTCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTtgt < 1:12928247/68‑1 (MQ=255) caTCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTtgt < 1:2770979/68‑1 (MQ=255) caTCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTtgt < 1:26814714/68‑1 (MQ=255) caTCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTtgt < 1:26053589/68‑1 (MQ=255) caTCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTtgt < 1:5526066/68‑1 (MQ=255) caTCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTtgt < 1:24531885/68‑1 (MQ=255) caTCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTtgt < 1:36195307/68‑1 (MQ=255) tCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTgtgt > 1:25556106/1‑68 (MQ=255) tCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTgtgt > 1:28413767/1‑68 (MQ=255) cGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTa > 1:28182294/1‑68 (MQ=255) gTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTa > 1:18728135/1‑67 (MQ=255) ttAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATc < 1:11684744/67‑1 (MQ=255) ttAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATc < 1:20439009/67‑1 (MQ=255) ttAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATc < 1:12562169/67‑1 (MQ=255) ttAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATc < 1:3791592/67‑1 (MQ=255) ttAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATc < 1:19788337/67‑1 (MQ=255) ttAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATc < 1:4413241/67‑1 (MQ=255) ttAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATc < 1:23253748/67‑1 (MQ=255) ttAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATc < 1:2982335/67‑1 (MQ=255) ttAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATc < 1:29439909/67‑1 (MQ=255) ttAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATc < 1:5168189/67‑1 (MQ=255) ttAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATc < 1:10308343/67‑1 (MQ=255) ttAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATc < 1:26354779/67‑1 (MQ=255) ttAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCa < 1:18158431/68‑1 (MQ=255) ttAACGCCACGCCGGGTGCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATc < 1:4795549/67‑1 (MQ=255) tAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTTGGTATc > 1:27144461/1‑66 (MQ=255) aaCGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACt < 1:34407185/68‑1 (MQ=255) ccgccacgccGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACTa > 1:16105446/2‑68 (MQ=255) acgccacgccGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACTa > 1:7426644/1‑68 (MQ=255) acgccacgccGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACTa < 1:34864384/68‑1 (MQ=255) cgccacgccGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACTaa > 1:11503960/1‑68 (MQ=255) gccacgccGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACTAAt > 1:6615446/1‑68 (MQ=255) gccacgccGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACTAAt > 1:27398920/1‑68 (MQ=255) gccacgccGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACTAAt < 1:35391585/68‑1 (MQ=255) gccacgccGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACTAAt > 1:17870402/1‑68 (MQ=255) gccacgccGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACTAAt > 1:32575695/1‑68 (MQ=255) gccacgccGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACTAAt > 1:23650932/1‑68 (MQ=255) ccacgccGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGTGAGCTGTTTGTGTATCACTAAt < 1:13266823/67‑1 (MQ=255) ccGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACTAATGCGATc > 1:34210076/1‑68 (MQ=255) ccGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACTAATGCGATCGAGCgcggc > 1:25410186/1‑68 (MQ=255) ccGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACTAATGCGATCGAGCgcggc > 1:6403792/1‑68 (MQ=255) ccGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACTAATGCGATCGAGCgcggc > 1:33157745/1‑68 (MQ=255) ccGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACTAATGCGATCGAGCgcggc < 1:19910353/68‑1 (MQ=255) cGAGAGTGAATTTTTCTGCCTGCGTGCGGGAAGCTGTTTGTGTATCACTAATGCGATCGAGCgcggcg > 1:17386482/1‑68 (MQ=255) gagaGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACTAATGCGATCGAGCGCGGCGt < 1:28948871/68‑1 (MQ=255) gagaGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACTAATGCGATCGAGCGCGGCGt < 1:19328036/68‑1 (MQ=255) tttCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACTAATGCGATCGAGCGCGGCGTGCAGCTGCCCg < 1:32281856/68‑1 (MQ=255) ttCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACTAATGCGATCGAGCGCGGCGTGCAGCTGCCCgg < 1:30339984/68‑1 (MQ=255) tCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACTAATGCGATCGAGCGCGGCGTGCAGCTGCCCGGc > 1:10591286/1‑68 (MQ=255) tCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACTAATGCGATCGAGCGCGGCGTGCAGCTGCCCGGc < 1:8634027/68‑1 (MQ=255) gcctgcGTGCGGGCAGCTGTTTGTGTATCACTAATGCGATCGAGCGCGGCGTGCAGCTGCCCGGCaaa > 1:1135365/1‑68 (MQ=255) cctgcGTGCGGGCAGCTGTTTGTGTATCACTAATGCGATCGAGCGCGGCGTGCAGCTGCCCGGCaaa > 1:24849198/1‑67 (MQ=255) ctgcGTGCGGGCAGCTGTTTGTGTATCACTAATGCGATCGAGCGCGGCGTGCAGCTGCCCGGCaaaa < 1:20658617/67‑1 (MQ=255) ctgcGTGCGGGCAGCTGTTTGTGTATCACTAATGCGATCGAGCGCGGCGTGCAGCTGCCCGGCAAAAc < 1:37062909/68‑1 (MQ=255) tgcgGGCAGCTGTTTGTGTATCACTAATGCGATCGAGCGCGGCGTGCAGCTGCCCGGCAAAACTAATg > 1:27993389/1‑68 (MQ=255) gcCGGGCAGCGGTTTGTGTATCACTAATGCGATCGCGCGCGGCGTGCAGCTGCCCGGCAAAACGAATg < 1:22580296‑M1/66‑1 (MQ=255) | CATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACTAATGCGATCGAGCGCGGCGTGCAGCTGCCCGGCAAAACTAATGG > CP009273/2006271‑2006404 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |