| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 2006338 = | 414 (0.930) | 20 (0.050) | 13/92 | NT | 6.1% | coding (158/315 nt) | fliE | flagellar basal‑body component |
| ? | CP009273 | 2006392 = | 280 (0.770) | coding (104/315 nt) | fliE | flagellar basal‑body component | |||||
Only 100 of 459 total aligned reads displayed.
TTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACTAATGCGATCGAGCGCGGCGTGCAGCTGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACTCATCGCCGTAGCCTGTAACT > CP009273/2006325‑2006458 | tCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACTAATGCGATCGAGCGCGGCGTGCAGCTGCCCGGc < 1:1944355/68‑1 (MQ=255) tCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACTAATGCGATCGAGCGCGGCGTGCAGCTGCCCGGc > 1:10591286/1‑68 (MQ=255) tCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACTAATGCGATCGAGCGCGGCGTGCAGCTGCCCGGc > 1:1189618/1‑68 (MQ=255) tCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACTAATGCGATCGAGCGCGGCGTGCAGCTGCCCGGc > 1:17036659/1‑68 (MQ=255) cattcgttttgccgggcagctgcacgccgcgcgcgatcgcattagtgatacacaaaccgctgcccgGc < 1:22580296‑M2/2‑1 (MQ=255) ctgcctgcGTGCGGGCAGCTGTTTGTGTATCACTAATGCGATCGAGCGCGGCGTGCAGCTGCCCGGCa < 1:1503979/68‑1 (MQ=255) gcctgcGTGCGGGCAGCTGTTTGTGTATCACTAATGCGATCGAGCGCGGCGTGCAGCTGCCCGGCaaa > 1:1135365/1‑68 (MQ=255) agttttgccgggcagctgcacgccgcgcgcgatcgcattagtgatacacaaacagcggcccgGCaaaa < 1:19864506‑M2/6‑1 (MQ=255) gttttgcCGGGCAGCTGTTTGTGTATCACTAATGCGATCGAGCGCGGCGTGCAGCTGCCCGGCaaa < 1:28951922‑M1/59‑1 (MQ=255) ctgcGTGCGGGCAGCTGTTTGTGTATCACTAATGCGATCGAGCGCGGCGTGCAGCTGCCCGGCaaaa < 1:20658617/67‑1 (MQ=255) ctgcGTGCGGGCAGCTGTTTGTGTATCACTAATGCGATCGAGCGCGGCGTGCAGCTGCCCGGCaaa > 1:12346561/1‑66 (MQ=255) ctgcGTGCGGGCAGCTGTTTGTGTATCACTAATGCGATCGAGCGCGGCGTGCAGCTGCCCGGCAAAAc < 1:19116652/68‑1 (MQ=255) tgcgtgcgGGCAGCTGTTTGTGTATCACTAATGCGATCGAGCGCGGCGTGCAGCTGCCCGGCAAAACt < 1:14108900/68‑1 (MQ=255) tttgccgggcagctgcacgccgcgctcgatcgcattagtgatacacaaaccgctgcccgGCAAAAc < 1:26654615‑M2/7‑1 (MQ=255) tgcgGGCAGCTGTTTGTGTATCACTAATGCAATCGAGCGCGGCGTGCAGCTGCCCGGCAAAACTAATg > 1:13535766/1‑68 (MQ=255) gccgCTGTTTGTGTATCACTAATGCGATCGAGCGCGGCGTGCAGCTGCCCGGCAAAAGTAATGGTCgg > 1:4040168/4‑68 (MQ=255) CAGCTGTTTGTGTATCACTAATGCGATCGAGCGCGGCGTGCAGCTGCCCGGCAAAACTAATGGTCgg > 1:4466499‑M1/1‑67 (MQ=255) TGTTTGTGTATCACTAATGCGATCGAGCGCGGCGTGCAGCTGCCCGGCAAAACTAATGGTCGGTTGCg > 1:23457846‑M1/1‑68 (MQ=255) ttGTGTATCACTAATGCGATCGAGCGCGGCGTGCAGCTGCCCGGCAAAACTAATGGTCGGTTGCGGc < 1:15513889/67‑1 (MQ=255) ttGTGTATCACTAATGCGATCGAGCGCGGCGTGCAGCTGCCCGGCAAAACTAATGGTCGGTTGCGGc < 1:13322845/67‑1 (MQ=255) acgccgcgctcgagcgcattagtgatacacaaacagccccccgGCAAAACTAATGGTCGGTTGCGGc < 1:6649096‑M2/24‑1 (MQ=255) gtgtATCACTAATGCGATCGAGCGCGGCGTGCAGCTGCCCGGCAAAACTAATGGTCGGTTGCGGCAGt > 1:19998193/1‑68 (MQ=255) gtgtATCACTAATGCGATCGAGCGCGGCGTGCAGCTGCCCGGCAAAACTAATGGTCGGTTGCGGCAGt > 1:779759/1‑68 (MQ=255) gtgtATCACTAATGCGATCGAGCGCGGCGTGCAGCTGCCCGGCAAAACTAATGGTCGGTTGCGGCAGt > 1:9743387/1‑68 (MQ=255) tgtATCACTAATGCGATCGAGCGCGGCGTGCAGCTGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTg > 1:24027961/1‑68 (MQ=255) tgtATCACTAATGCGATCGAGCGCGGCGTGCAGCTGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTg > 1:4947926/1‑68 (MQ=255) tgtATCACTAATGCGATCGAGCGCGGCGTGCAGCTGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTg > 1:1028101/1‑68 (MQ=255) tgtATCACTAATGCGATCGAGCGCGGCGTGCAGCTGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTg > 1:10050661/1‑68 (MQ=255) tATCACTAATGCGATCGAGCGCGGCGTGCAGCTGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGAt > 1:25021841/1‑68 (MQ=255) gcgatcgcattagtgacacacaaacagctgcccgGCAAAACTAATGGTCGGTTGCGGCAGTGATTcc < 1:27046099‑M2/33‑1 (MQ=255) aCTAATGCGATCGAGCGCGGCGTGCAGCTGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGAtt > 1:25574962/1‑65 (MQ=255) aCTAATGCGATCGAGCGCGGCGTGCAGCTGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGAtt > 1:28387410/1‑65 (MQ=255) aCTAATGCGATCGAGCGCGGCGTGCAGCTGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGAtt > 1:13039611/1‑65 (MQ=255) aCTAATGCGATCGAGCGCGGCGTGCAGCTGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGAtt > 1:6828874/1‑65 (MQ=255) tGCGATCGAGCGCGGCGTGCAGCTGCCCGGCAAATCTAATGGTCGGTTGCGGCAGTGATTCCTgcgc > 1:34777973/1‑67 (MQ=255) tGCGATCGAGCGCGGCGTGCAGCTGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTgcgca < 1:35348790/68‑1 (MQ=255) tGCGATCGAGCGCGGCGTGCAGCTGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTgcgca < 1:18518378/68‑1 (MQ=255) tGCGATCGAGCGCGGCGTGCAGCTGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTgcgc > 1:5691253/1‑67 (MQ=255) tGCGATCGAGCGCGGCGTGCAGCTGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTgcgc > 1:33651860/1‑67 (MQ=255) tGCGATCGAGCGCGGCGTGCAGCTGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTgcgc > 1:33037738/1‑67 (MQ=255) tGCGATCGAGCGCGGCGTGCAGCTGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTgcgc > 1:3240803/1‑67 (MQ=255) tGCGATCGAGCGCGGCGTGCAGCTGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTgcgc > 1:6945401/1‑67 (MQ=255) tGCGATCGAGCGCGGCGTGCAGCTGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTgcgc > 1:28160316/1‑67 (MQ=255) tGCGATCGAGCGCGGCGTGCAGCTGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTgcgc > 1:27884992/1‑67 (MQ=255) tGCGATCGAGCGCGGCGTGCAGCTGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTgcgc > 1:10922633/1‑67 (MQ=255) tGCGATCGAGCGCGGCGTGCAGCTGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTgcgc > 1:19627416/1‑67 (MQ=255) tGCGATCGAGCGCGGCGTGCAGCTGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTgcgc > 1:1804135/1‑67 (MQ=255) tGCGATCGAGCGCGGCGTGCAGCTGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTgcgc > 1:24617334/1‑67 (MQ=255) tGCGATCGAGCGCGGCGTGCAGCTGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTgcgc > 1:2169820/1‑67 (MQ=255) tGCGATCGAGCGCGGCGTGCAGCTGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTgcgc > 1:16623980/1‑67 (MQ=255) tGCGATCGAGCGCGGCGTGCAGCTGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTgcgc > 1:21807533/1‑67 (MQ=255) tGCGATCGAGCGCGGCGTGCAGCTGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTgcgc > 1:22518624/1‑67 (MQ=255) tGCGATCGAGCGCGGCGTGCAGCTGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTgcgc > 1:17697612/1‑67 (MQ=255) tGCCATCGACCGCCGCGTCCAGCTGCCCGGCAAAACTAAAGGTCGGTAGCGGCAGTCAATCCTgcgc > 1:8756309/1‑67 (MQ=255) gCGATCGAGCGCGGCGTGCAGCTCCCCGGCAAAACAAATGGTCGCTTGCGGCAGTGATTCCTgcgcac > 1:16250502/1‑68 (MQ=255) gATCGAGCGCGGCGTGCAGCTGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTgcgcacgc > 1:8160227/1‑68 (MQ=255) gATCGAGCGCGGCGTGCAGCTGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTgcgcacgc < 1:34350175/68‑1 (MQ=255) gATCGAGCGCGGCGTGCAGCTGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTgcgcacg < 1:21317424/67‑1 (MQ=255) ttagtgatacacaaactgctgcccgGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTgcgcacgcg < 1:34448396‑M2/43‑1 (MQ=255) tCGAGCGCGGCGTGCAGCTGCCCGGCAAAACTAATGGTCGGTCGCGGCAGTGATTCCTgcgcacgcg < 1:26247260/67‑1 (MQ=255) cGAGCGCGGCGTGCAGCTGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTgcgcacgcgc > 1:35527601/1‑67 (MQ=255) cGAGCGCGGCGTGCAGCTGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTgcgcacgcgc > 1:27672633/1‑67 (MQ=255) cGAGCGCGGCGTGCAGCTGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTgcgcacgcgc > 1:6400024/1‑67 (MQ=255) gcgcGGCGTGCAGCTGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACt < 1:36239172/67‑1 (MQ=255) gcgcGGCGTGCAGCTGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACt < 1:35255118/67‑1 (MQ=255) gcgcGGCGTGCAGCTGCCCGGCAAAACTAATGGTCGGGTGCGGCAGTGATTCCTGCGCACGCGCACt < 1:18702914/67‑1 (MQ=255) gcggcgTGCAGCTGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCTCTCa > 1:37064501/1‑67 (MQ=255) gcggcgTGCAGCTGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACTCa > 1:9031782/1‑67 (MQ=255) gcggcgTGCAGCTGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACTCa > 1:15203175/1‑67 (MQ=255) gcggcgTGCAGCTGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACTCa < 1:1598055/67‑1 (MQ=255) gcggcgTGCAGCTGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACTCa > 1:7611730/1‑67 (MQ=255) ggcgTGCAGCTGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACTCATc < 1:22981617/67‑1 (MQ=255) ggcgTGCAGCTGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACTCATc > 1:20984243/1‑67 (MQ=255) ggcgTGCAGCTGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACTCATc < 1:5037739/67‑1 (MQ=255) ggTGCAGCTGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACTCATCGc < 1:16867346/66‑1 (MQ=255) cgTGCAGCTGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACTCATCGc < 1:2356980/67‑1 (MQ=255) cgTGCAGCTGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACTCATCGc < 1:3168778/67‑1 (MQ=255) cgTGCAGCTGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACTCATCGc < 1:31212700/67‑1 (MQ=255) cgTGCAGCTGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACTCATCGc < 1:14582786/67‑1 (MQ=255) agctgcccgGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACTCATCGCCGTAg < 1:2977258‑M2/58‑1 (MQ=255) gctgcccgGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCCCGCGCACTCATCGCCGTAGcc > 1:33864789‑M2/9‑68 (MQ=255) gctgcccgGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACTCATCGCCGTAg > 1:28010453‑M2/9‑66 (MQ=255) tgcccgGCATAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACTCATCGCCGCAGc < 1:35973225‑M2/59‑1 (MQ=255) tgcccgGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACTCATCGCCGTAg > 1:8410436‑M2/7‑64 (MQ=255) tgcccgGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACTCATCGCCGTAg > 1:30386873‑M2/7‑64 (MQ=255) tgcccgGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACTCATCGCCGTAg > 1:28819188‑M2/7‑64 (MQ=255) tgcccgGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACTCATCGCCGTAg > 1:30020036‑M2/7‑64 (MQ=255) tgcccgGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACTCATCGCCGTAGc < 1:35041839‑M2/59‑1 (MQ=255) tgcccgGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACTCATCGCCGTAGc < 1:29371489‑M2/59‑1 (MQ=255) tgcccgGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACTCATCGCCGTAGc < 1:11731517‑M2/59‑1 (MQ=255) tgcccgGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACTCATCGCCGTAGc < 1:32767477‑M2/59‑1 (MQ=255) tgcccgGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACTCATCGCCGTAGc < 1:25282097‑M2/59‑1 (MQ=255) tgcccgGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACTCATCGCCGTAGc < 1:7305770‑M2/59‑1 (MQ=255) tgcccgGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACTCATCGCCGTAGc < 1:32044490‑M2/59‑1 (MQ=255) tgcccgGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACTCATCGCCGTAGc < 1:30955436‑M2/59‑1 (MQ=255) tgcccgGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACTCATCGCCGTAGc < 1:30638452‑M2/59‑1 (MQ=255) tgcccgGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACTCATCGCCGTAGc < 1:2591555‑M2/59‑1 (MQ=255) ccggGCAAAACTAAAGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACTCATCGCCGTAGCCTGt < 1:36633982‑M2/63‑1 (MQ=255) ccgGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACTCATCGCCGTAGCCTGTa > 1:18983466‑M2/4‑67 (MQ=255) gGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACTCATCGCCGTAGCCTGTAACt < 1:26586414‑M2/67‑1 (MQ=255) | TTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACTAATGCGATCGAGCGCGGCGTGCAGCTGCCCGGCAAAACTAATGGTCGGTTGCGGCAGTGATTCCTGCGCACGCGCACTCATCGCCGTAGCCTGTAACT > CP009273/2006325‑2006458 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |