| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 2548559 | NA (NA) | 6 (0.020) | 4/92 | NT | NA | noncoding (9/24 nt) | REP177 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP177 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | = 2548565 | NA (NA) | noncoding (15/24 nt) | REP177 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP177 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
Only 100 of 181 total aligned reads displayed.
TTTTCGGGTAAGGGTTCATGATAAAGATGGTGCAAATTGGCTGTACGGGTCTTTTTCATGATGTTAATGCCGGGTGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/2548483‑2548559‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgccgggtgtCCTACAACACCCGGCATTAACATCATGAAAAAGACCCGTACAGCCAATTTGCACCATCTTTATCAT < CP009273/2548565‑2548500 TTTTCGGGTAAGGGTTCATGATAAAGATGGTGCAAATTGGCTGTACGGGTCTTTTTCATGATGTTAAT > 1:18659407/1‑68 TTTCGGGTAAGGGTTCATGATAAAGATGGTGCAAATTGGCTGTACGGGTCTTTTTCATGATGTTAAT < 1:5193496/67‑1 TTTCGGGTAAGGGGTCATGATACAGATGGTGCAAATTGGCTGTACGGGGCTTTTTCATGATGTTAAT < 1:29666913/67‑1 TTCGGGTAAGGGTTCATGATAAAGATGGTGCAAATTGGCTGTACGGGTCTTTTTCATGATGTTAATGC < 1:6800741/68‑1 TTCGGGTAAGGGTTCATGATAAAGATGGTGCAAATTGGCTGTACGGGTCTTTTTCATGATGTTAATGC < 1:630032/68‑1 GGGTAAGGGTTCATGATAAAGATGGTGCAAATTGGCTGTACGGGTCTTTTTCATGATGTTAATGCCGG > 1:8819341/1‑68 GGGTAAGGGTTCATGATAAAGATGGTGCAAATTGGCTGTACGGGTCTTTTTCATGATGTTAATGCCGG < 1:17532189/68‑1 GGGTAAGGGTTCATGATAAAGATGGGGCAAATTGGCTGTACGGGTCTTTTTCATGATGTTAATGCCGG < 1:27585589/68‑1 GGTAAGGGTTCATGATAAAGATGGTGCAAATTGGCTGTACGGGTCTTTTTCATGATGTTAATGCCGGG > 1:20079859/1‑68 GTAAGGGTTCATGATAAAGATGGTGCAAATTGGCTGTACGGGTCTTTTTCATGATGTTAATGCCGGGT > 1:16015050/1‑68 GTAAGGGTTCATGATAAAGATGGTGCAAATTGGCTGTACGGGTCTTTTTCATGATGTTAATGCCGGGT > 1:5351135/1‑68 GTAAGGGTTCATGATAAAGATGGTGCAAATTGGCTGTACGGGTCTTTTTCATGATGTTAATGCCGGGT < 1:942476/68‑1 tacGGGTTCATGATAAAGATTGTGCAAATTGGCTGTACGGGTCTTTTTCATGATGTTAATGCCTGGT < 1:31428571/64‑1 TAAGGTTTCATGATAAAGATGGTGCAAATTGGCTGTACGGGGCTTTTTCATGATGTTAATGCCGGGT < 1:36152542/67‑1 TAAGGGTTCATGATAAAGATTGAGCAAATTGGCTGTACGGGTCTTTTTAATTATGTTAATGCCGGGT < 1:8915117/67‑1 TAAGGGTTCATGATAAAGATGGTGCAAATTGGCTGTACGGGTCTTTTTCATGATGTTAATGCCGGGTG > 1:15238397/1‑68 TAAGGGTTCATGATAAAGATGGTGCAAATTGGCTGTACGGGTCTTTTTCATGATGTTAATGCCGGGT < 1:35853365/67‑1 TAAGGGTTCATGATAAAGATGGTGCAAATTGGCTGTACGGGTCTTTTTCATGATGTTAATGCCGGGT < 1:30174384/67‑1 TAAGGGTTCATGATAAAGATGGTGCAAATTGGCTGTACGGGTCTTTTTCATGATGTTAATGCCGGGT < 1:16960741/67‑1 TAAGGGTTCATGATAAAGATGGTGCAAATTGGCTGTACGGGTCTTTTTCATGATGTTAATGCCGGGT < 1:18112018/67‑1 TAAGGGTTCATGATAAAGATGGTGCAAATTGGCTGTACGGGTCTTTTTCATGATGTTAATGCCGGGT < 1:36090733/67‑1 TAAGGGTTCATGATAAAGATGGTGCAAATTGGCTGTACGGGTCTTTTTCATGATGTTAATGCCGGGT < 1:21594563/67‑1 TAAGGGTTCATGATAAAGATGGTGCAAATTGGCTGTACGGGTCTTTTTCATGATGTTAATGCCGGGT < 1:4668943/67‑1 TAAGGGTTCATGATAAAGATGGTGCAAATTGGCTGTACGGGTCTTTTTCATGATGTTAATGCCGGGT < 1:27248667/67‑1 TAAGGGTTCATGATAAAGATGGTGCAAATTGGCTGTACGGGTCTTTTTCATGATGTTAATGCCGGGT < 1:12208954/67‑1 TAAGGGTTCATGATAAAGATGGTGCAAATTGGCTGTACGGGTCTTTTTCATGATGTTAATGCCGGGT < 1:8791269/67‑1 TAAGGGTTCATGATAAAGATGGTGCAAATTGGCTGTACGGGTCTTTTTCATGATGTTAATGCCGGGT < 1:7658208/67‑1 TAAGGGTTCATGATAAAGATGGTGCAAATTGGCTGTACGGGTCTTTTTCATGATGTTAATGCCGGGT < 1:11042683/67‑1 TAAGGGTTCATGATAAAGATCGTGCAAATTGGCTGTACGGGTCTTTTTCATGATGTTAATGCCGGGT < 1:34184409/67‑1 TAAGGGTGCATGATAAAGATGGTGCAAATTGGCTGTACGGGTCTTTTTCATGATGTTAATGCCGGGT < 1:16239734/67‑1 TAAGGCTTCATGATAAAGATGGTGCAAATTGGCTGTACGGGTCCTTTTCATGATGTTAATGCCGGGT < 1:8172956/67‑1 AAGGGTTCATGATAAAGATGGTGCAAATTGGCTGTACGGGTCTTTTTCATGATGTTAATGCCGGGTGT < 1:15926839/68‑1 AAGGGTTCATGATAAAGATGGTGCAAATTGGCTGTACGGGTCTTTTTCATGATGTTAATGCCGGGTGT < 1:32324665/68‑1 AAGGGTTCATGATAAAGATGGTGCAAATTGGCTGTACGGGTCTTTTTCATGATGTTAATGCCGGGTGT < 1:29056724/68‑1 AAGGGTTCATGATAAAGATGGTGCAAATTGGCTGTACGGGTCTTTTTCATGATGTTAATGCCGGGTGT < 1:276856/68‑1 AAGGGTTCATGATAAAGATGGTGCAAATTGGCTGTACGGGTCTTTTTCATGATGTTAATGCCGGGTGT < 1:12455295/68‑1 AAGGGTTCATGATAAAGATGGTGCAAATTGGCTGTACGGGTCTTTTTCATGATGTTAATGCCGGGTGT < 1:26722185/68‑1 AAGGGTTCATGATAAAGATGGTGCAAATTGGCTGTACGGGTCTTTTTCATGATGTTAATGCCGGGTGT < 1:15421056/68‑1 AAGGGTTCATGATAAAGATGGTGCAAATTGGCTGTACGGGTCTTTTTCATGATGTTAATGCCGGGTGT < 1:34758889/68‑1 AAGGGTTCATGATAAAGATGGTGCAAATTGGCTGTACGGGTCTTTTTCATGATGTTAATGCCGGGTGT < 1:15663761/68‑1 AAGGGTTCATGATAAAGATGGTGCAAATTGGCTGTACGGGTCTTTTTCATGATGTTAATGCCGGGTGT < 1:1849455/68‑1 AAGGGTTCATGATAAAGATGGTGCAAATTGGCTGTACGGGTCTTTTTCATGATGTTAATGCCGGGTG < 1:15726469/67‑1 AAGGGTTCATGATAAAGATGGTGCAAATTGGCTGTACGGGTCTATTTCATGATGTTAATGCCGGGTGT < 1:9316430/68‑1 AAGGGTTCATGATAAAGATCGTGCAAATTGGCTGTACGGGTCTTTTTCATGATGTTAATGCCGGGTGT < 1:6135148/68‑1 AAGGGTTCATGATAAAGATAGTGCAAATTGGCTGTACGGGTCTTTTTCATGATGTTAATGCCGGGTGT < 1:21316308/68‑1 AAGGGTGCATGATAAAGATGGTGCAAATTGGCTGTACGGGTCTTTTTCATGATGTTAATGCCGGGTGT < 1:4978485/68‑1 GGTCTTTTTCATGATGTTAATGCCGGGTGTCCTACAACACCCGGCATTAACATCATGAAAAAGACCCG > 1:30846041/1‑68 TCTTTTTCATGATGTTAATGCCGGGTGTCCTCCAACACCCGGCATTAACATCATGAAAAAGCCCCGT > 1:5974114/1‑67 TCTTTTTCATGATGTTAATGCCGGGTGTCCTACACCCCCCGGCATTAACATCATGAAAAAGACCCGT > 1:5919/1‑67 TTCATGATGTTAATGCCGGGTGTCCTACACCACCCGGCATTAACATCATGAAAAAGACCCGTACAGCC > 1:4602689/1‑68 TGCCGGGTGTCCTACAACACCCGGCATTAACATCATGAAAAAGACCCGTACAGCCAATTTGCACCAT < 1:32918187/67‑1 TGCCGGGTGTCCTACAACACCCGGCATTAACATCATGAAAAAGACCCGTACAGCCAATTTGCACCAT < 1:31516873/67‑1 TGCCGGGTGTCCTACAACACCCGGCATTAACATCATGAAAAAGACCCGTACAGCCAATTTGCACCAT < 1:19363893/67‑1 TGCCGGGTGTCCTACAACACCCGGCATTAACATCATGAAAAAGACCCGTACAGCCAATTTGCACCAT < 1:17074514/67‑1 TGCCGGGTGTCCTACAACACCCGGCATTAACATCATGAAAAAGACCCGTACAGCCAATTTGCACCAT < 1:33750624/67‑1 TGCCGGGTGTCCTACAACACCCGGCATTAACATCATGAAAAAGACCCGTACAGCCAATTTGCACCAT < 1:28258584/67‑1 TGCCGGGTGTCCTACAACACCCGGCATTAACATCATGAAAAAGACCCGTACAGCCAATTTGCACCAT < 1:17293345/67‑1 TGCCGGGTGTCCTACAACACCCGGCATTAACATCATGAAAAAGACCCGTACAGCCAATTTGCACCAT < 1:25938353/67‑1 TGCCGGGTGTCCTACAACACCCGGCATTAACATCATGAAAAAGACCCGTACAGCCAATTTGCACCAT < 1:23464446/67‑1 TGCCGGGTGTCCTACAACACCCGGCATTAACATCATGAAAAAGACCCGTACAGCCAATTTGCACCAT < 1:13847790/67‑1 TGCCGGGTGTCCTACAACACCCGGCATTAACATCATGAAAAAGACCCGTACAGCCAATTTGCACCAT < 1:14346126/67‑1 TGCCGGGTGTCCTACAACACCCGGCATTAACATCATGAAAAAGACCCGTACAGCCAATTTGCACCAT < 1:18888186/67‑1 GCCGGGTGTCCTACAACACCCGGCATTAACATCATGAAAAAGCCCCGTACCGCCAATTTGCTCCATCT > 1:11455256/1‑68 GCCGGGTGTCCTACAACACCCGGCATTAACATCATGAAAAAGACCCGTGCAGCCAATTTGGACCATCT > 1:18251156/1‑68 GCCGGGTGTCCTACAACACCCGGCATTAACATCATGAAAAAGACCCGTACAGCCAATTTGCACCATCT < 1:257042/68‑1 GCCGGGTGTCCTACAACACCCGGCATTAACATCATGAAAAAGACCCGTACAGCCAATTTGCACCATCT < 1:31956412/68‑1 GCCGGGTGTCCTACAACACCCGGCATTAACATCATGAAAAAGACCCGTACAGCCAATTTGCACCATCT > 1:7205305/1‑68 GCCGGGTGTCCTACAACACCCGGCATTAACATCATGAAAAAGACCCGTACAGCCAATTTGCACCATC < 1:8996509/67‑1 GCCGGGTGTCCTACAACACCCGGCATTAACATCATGAAAAAGACCCGTACAGCCAATTTGCACCATC < 1:4384248/67‑1 GCCGGGTGTCCTACAACACCCGGCATTAACATCATGAAAAAGACCCGTACAGCCAATTTGCACCATC < 1:7380157/67‑1 GCCGGGTGTCCTACAACACCCGGCATTAACATCATGAAAAAGACCCGTACAGCCAATTTGCACCATC < 1:2698920/67‑1 GCCGGGTGTCCTACAACACCCGGCATTAACATCATGAAAAAGACCCGTACAGCCAATTTGCACCATC < 1:14717215/67‑1 GCCGGGTGTCCTACAACACCCGGCATTAACATCATGAAAAAGACCCGTACAGCCAATTTGCACCATC < 1:34620402/67‑1 GCCGGGTGTCCTACAACACCCGGCATTAACATCATGAAAAAGACCCGTACAGCCAATTTGCACCATC < 1:13590585/67‑1 GCCGGGTGTCCTACAACACCCGGCATTAACATCATGAAAAAGACCCGTACAGCCAATTTGCACCATC < 1:27843996/67‑1 GCCGGGTGTCCTACAACACCCGGCATTAACATCATGAAAAAGACCCGTACAGCCAATTTGCACCATC < 1:10675164/67‑1 GCCGGGTGTCCTACAACACCCGGCATTAACATCATGAAAAAGACCCGTACAGCCAATTTGCACCATC < 1:12908846/67‑1 GCCGGGTGTCCTACAACACCCGGCATTAACATCATGAAAAAGACCCGTACAGCCAATTTGCACCATC < 1:1711919/67‑1 GCCGGGTGTCCTACAACACCCGGCATTAACATCATGAAAAAGACCCGTACAGCCAATTTGCACCATC < 1:21093260/67‑1 GCCGGGTGTCCTACAACACCCGGCATTAACATCATGAAAAAGACCCGTACAGCCAATTTGCACCATC < 1:1771769/67‑1 GCCGGGGGTCCTACAACACCCGGCATTAACATCATGAAAAAGACCCGTACAGCCAATTTGCACCATC < 1:11842196/67‑1 GCCGGGGGTCCTACAACACCCGGCATTAACATCATGAAAAAGACCCGTACAGCCAATTTGCACCATC < 1:16620843/67‑1 GGTGTCCTACAACACCCGGCATTAACATCATGAAAAAGACCCGTACAGCCAATTTGCACCATCTTTA > 1:14448818/1‑67 GTGTCCTACAACACCCGTCATTAACATCATGAAAAAGACCCTTACAGCCAATTTGCACCATCTTTAT < 1:22138860/67‑1 GTGTCCTACAACACCCGGCATTAACATCATGAAAAAGACCCGTACAGCCAATTTGCACCATCTTTATC > 1:35573022/1‑68 GTGTCCTACAACACCCGGCATTAACATCATGAAAAAGACCCGTACAGCCAATTTGCACCATCTTTATC > 1:24197384/1‑68 GTGTCCTACAACACCCGGCATTAACATCATGAAAAAGACCCGTACAGCCAATTTGCACCATCTTTATC > 1:30473214/1‑68 GTGTCCTACAACACCCGGCATTAACATCATGAAAAAGACCCGTACAGCCAATTTGCACCATCTTTAT < 1:35114883/67‑1 TGTCCTACAACACCCGGCATTAACATCATGAAAAAGACCCGTACAGCCAATTTGCACCATCTTTATC < 1:13011898/67‑1 TGTCCTACAACACCCGGCATTAACATCATGAAAAAGACCCGTACAGCCAATTTGCACCATCTTTATC < 1:22296825/67‑1 TGTCCTACAACACCCGGCATTAACATCATGAAAAAGACCCGTACAGCCAATTTGCACCATCTTTATC < 1:6954937/67‑1 GTCCTACAACACCCGTCATTAACATCATGAAAAAGACCCGTACAGCCATTTTGCACAATCTGTATCAT > 1:10732916/1‑68 GTCCTACAACACCCGGCATTAACATCATGAAAAAGACCCGTACAGCCAATTTGCACCATCTTTATCAT > 1:25164596/1‑68 GTCCTACAACACCCGGCATTAACATCATGAAAAAGACCCGTACAGCCAATTTGCACCATCTTTATCA < 1:7970839/67‑1 GTCCTACAACACCCGGCATTAACATCATGAAAAAGACCCGTACAGCCAATTTGCACCATCTTTATCA < 1:1578905/67‑1 GTCCTACAACACCCGGCATTAACATCATGAAAAAGACCCGTACAGCCAATTTGCACCATCTTTATCA < 1:13246245/67‑1 GTCCTACAACACCCGGCATTAACATCATGAAAAAGACCCGTACAGCCAATTTGCACCATCTTTATCA < 1:1965849/67‑1 GTCCTACAACACCCGGCATTAACATCATGAAAAAGACCCGTACAGCCAATTTGCACCATCTTTATCA < 1:12360157/67‑1 GTCCTACAACACCCGGCATTAACATCATGAAAAAGACCCGTACAGCCAATTTGCACCATCTTTATCA < 1:415179/67‑1 GTCCTACAACACCCGGCATTAACATCATGAAAAAGACCCGTACAGCCAATTTGCACCATCTTTATCA < 1:35815399/67‑1 TTTTCGGGTAAGGGTTCATGATAAAGATGGTGCAAATTGGCTGTACGGGTCTTTTTCATGATGTTAATGCCGGGTGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/2548483‑2548559‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgccgggtgtCCTACAACACCCGGCATTAACATCATGAAAAAGACCCGTACAGCCAATTTGCACCATCTTTATCAT < CP009273/2548565‑2548500 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |