| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 2875593 = | 380 (0.850) | 13 (0.040) | 12/76 | NT | 5.0% | coding (404/483 nt) | casB | CRISP RNA (crRNA) containing Cascade antiviral complex protein |
| ? | CP009273 | 2875611 = | 236 (0.780) | coding (386/483 nt) | casB | CRISP RNA (crRNA) containing Cascade antiviral complex protein | |||||
Only 100 of 178 total aligned reads displayed.
GCTGACAGAACAGCCGATATGGTCCAGTTACGTCGATTACTTACTCACGCCGAACCCGTACTTGACTGGCCATTAATGGCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/2875675‑2875593‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggccattaatggccagTCAAGTACGGGTTCGGCGTGAGTAAGTAATCGACGTAACTGGACCATATCGGCTGTTCTGTCAGC > CP009273/2875611‑2875675 GCTGACAGAACAGCCGATATGGTCCAGTTACGTCGATTACTTACTCACGCCGAACCCGTACTTGACTG > 1:2728531/1‑68 TGACAGAACATCCTATATTGTCCAGTTACGTCTATTACTTACTCACGCCGAACCCCTACTTGACTGGC < 1:34745787/68‑1 TGACAGAACATCCGATATGGTCCAGTTACGTCGATTACTTACTCACGCCGAACCCGTACTTGACTGGC < 1:1362521/68‑1 TGACAGAACAGCCTATATGGTCCAGTTACGTCGATTACTTACTCATGCCGAACCCGTACTTGACTGG < 1:35900823/67‑1 TGACAGAACAGCCGATATGGTCCAGTTACGTCGATTACTTACTCACGCCGAACCCGTACTTGACTGGC < 1:27142647/68‑1 TGACAGAACAGCCGATATGGTCCAGTTACGTCGATTACTTACTCACGCCGAACCCGTACTTGACTGGC < 1:3908052/68‑1 TGACAGAACAGCCGATATGGTCCAGTTACGTCGATTACTTACTCACGCCGAACCCGTACTTGACTGGC < 1:21187526/68‑1 TGACAGAACAGCCGATATGGTCCAGTTACGTCGATTACTTACTCACGCCGAACCCGTACTTGACTGG < 1:30547289/67‑1 TGACAGAACAGCCGATATGGTCCAGTTACGTCGATTACTTACTCACGCCGAACCCGTACTTGACTGG < 1:294063/67‑1 TGACAGAACAGCCGATATGGTCCAGTTACGTCGATTACTTACTCACGCCGAACCCGTACTTGACTGG < 1:33023214/67‑1 TGACAGAACAGCCGATATGGTCCAGTTACGTCGATTACTTACTCACGCCGAACCCGTACTTGACTGG < 1:19393661/67‑1 TGACAGAACAGCCGATATGGTCCAGTTACGTCGATTACTTACTCACGCCGAACCCGTACTTGACTGG < 1:14641039/67‑1 TGACAGAACAGCCGATATGGTCCAGTTACGTCGATTACTTACTCACGCCGAACCCGTACTTGACTGG < 1:26573601/67‑1 TGACAGAACAGCCGATATGGTCCAGTTACGTCGATTACTTACTCACGCCGAACCCGTACTTGACTGG < 1:25336066/67‑1 TGACAGAACAGCCGATATGGTCCAGTTACGTCGATTACTTACTCACGCCGAACCCGTACTTGACTGG < 1:6835094/67‑1 TGACAGAACAGCCGATATGGTCCAGTTACGTCGATTACTTACTCACGCCGAACCCGTACTTGACTGG < 1:23180326/67‑1 TGACAGAACAGCCGATATGGTCCAGTTACGTCGATTACTTACTCACGCCGAACCCGTACTTGACTGG < 1:12098892/67‑1 TGACAGAACAGCCGATATGGTCCAGTTACGTCGATTACTTACTCACGCCGAACCCGTACTTGACTGG < 1:23519696/67‑1 TGACAGAACAGCCGATATGGTCCAGTTACGTCGATTACTTACTCACGCCGAACCCGTACTTGACTGG < 1:24092788/67‑1 TGACAGAACAGCCGATATGGGCCAGTTACGTCGATTACTTACTCACGCCGAACCCGTACTTGACTGG < 1:12550212/67‑1 TGACAGAACAGCCGATATGGGCCAGTTACGTCGATTACTTACTCACGCCGAACCCGTACTTGACTGG < 1:74432/67‑1 GACAGAACAGCCGATATGGTCCGGTTACGTCGATTACTTACTCACGCCGAACCCGTACTTGACTGGCC < 1:31265947/68‑1 GACAGAACAGCCGATATGGTCCAGTTACGTCGATTACTTACTCACGCCGAACCCGTACTTGACTGGCC < 1:20335207/68‑1 ACAGCCGATATGGTCCAGTTACGTCGATTACTTACTCACGCCGAACCCGTACTTGACTGGCCATTAAT > 1:6986931/1‑68 ACAGCCGATATGGTCCAGTTACGTCGATTACTTACTCACGCCGAACCCGTACTTGACTGGCCATTAAT < 1:25804902/68‑1 ACAGCCGATATGGTCCAGTTACGTCGATTACTTACTCACGCCGAACCCGTACTTGACTGGCCATT < 1:17954154/65‑1 ACAGCCGATATGGTCCAGTTACGTCGATTACTTACTCACGCCGAACCCGTACTTGACTGGCCATT < 1:21930392/65‑1 ACAGCCGATATGGTCCAGTTACGTCGATTACTTACTCACGCCGAACCCGTACTTGACTGGCCATT < 1:33374303/65‑1 ACAGCCGATATGGTCCAGTTAAGTCGATTACTTACTCACGCCGAACCCGTACTTGACTGGCCATT < 1:15230984/65‑1 CAGCCGATATGGTCCAGTTACGTCGATTACTTACTCACGCCGAACCCGTACTTGACTGGCCATTAATG > 1:10111167/1‑68 AGCCGATATGGTCCAGTTACGTCGATTACTTACTCACGCCGAACCCGTACTTGACTGGCCATTAATG > 1:28510343/1‑67 CGATATGGTCCAGTTACGTCGATTACTTACTGACGGCGAACGCGTACTTGACTGGCCATTAATtg < 1:16597257/65‑3 CGATATGGTCCAGTTACGTCGATTACTTACTCACGCCGAACCCGTACTTGACTGGCCATTAATGGCCA > 1:22831731/1‑68 CGATATGGTCCAGTTACGTCGATTACTTACTCACGCCGAACCCGTACTTGACTGGCCATTAATGGCCA > 1:18158127/1‑68 CGATATGGTCCAGTTACGTCGATTACTTACTCACGCCGAACCCGTACTTGACTGGCCATTAATGGCCA > 1:7731536/1‑68 CGATATGGTCCAGTTACGTCGATTACTTACTCACGCCGAACCCGTACTTGACTGGCCATTAATGGCC < 1:24627943/67‑1 CGATATGGTCCAGTTACGTCGATTACTTACTCACGCCGAACCCGTACTTGACTGGCCATTAATGGC < 1:26952041/66‑1 CGATATGGTCCAGTTACGTCGATTACTTACTCACGCCGAACCCGTACTTGACTGGCCATTAATGGC < 1:14786902/66‑1 CGATATGGTCCAGTTACGTCGATTACTTACTCACGCCGAACCCGTACTTGACTGGCCATTAATGG < 1:35188930/65‑1 CGATATGGTCCAGTTACGTCGATTACTTACTCACGCCGAACCCGTACTTGACTGGCCATTAATGG < 1:3693887/65‑1 CGATATGGTCCAGTTACGTCGATTACTTACTCACGCCGAACCCGTACTTGACTGGCCATTAATGG < 1:28386525/65‑1 CGATATGGTCCAGTTACGTCGATTACTTACTCACGCCGAACCCGTACTTGACTGGCCATTAATGG < 1:6252942/65‑1 CGATATGGTCCAGTTACGTCGATTACTTACTCACGCCGAACCCGTACTTGACTGGCCATTAATGG < 1:10148837/65‑1 CGATATGGTCCAGTTACGTCGATTACTTACTCACGCCGAACCCGTACTTGACTGGCCATTAATGG < 1:20945511/65‑1 CGATATGGTCCAGTTACGTCGATTACTTACTCACGCCGAACCCGTACTTGACTGGCCATTAATGG < 1:15148493/65‑1 CGATATGGTCCAGTTACGTCGATTACTTACTCACGCCGAACCCGTACTTGACTGGCCATTAATGG < 1:15496377/65‑1 CGATATGGTCCAGTTACGTCGATTACTTACTCACGCCGAACCCGTACTTGACTGGCCATTAATGG < 1:17340049/65‑1 CGATATGGTCCAGTTACGTCGATTACTTACTCACGCCGAACCCGTACTTGACTGGCCATTAATG < 1:13112972/64‑1 TATGGTCCAGTTACGTCGATTACTTACTCACGCCGAACCCGTACTTGACTGGCCATTAATGGCCAGT < 1:21969766/67‑1 TATGGTCCAGTTACGTCGATTACTTACTCACGCCGAACCCGTACTTGACTGGCCATTAATGGCCAGT < 1:32072635/67‑1 TATGGGCCAGTTACGTCGATTACTTACTCACGCCGAACCCGTACTTGACTGGCCATTAATGGCCAGT < 1:1184239/67‑1 TCCAGTTACGTCGATTACTTACTCACGCCGAACCCGTACTTGACTGGCCATTAATGGCCAGTCAAGT < 1:13303076/67‑1 CCAGTTACGTCGATTACTTACTCACGCCGAACCCGTACTTGACTGGCCATTAATGGCCAGTCAAGTA < 1:24722431/67‑1 CCAGTTACGTCGATTACTTACTCACGCCGAACCCGTACTTGACTGGCCATTAATGGCCAGTCAAGTA < 1:30995007/67‑1 TACGTCGATTACTTACTCACGCCGAACCCGTACTTGACTGGCCATTAATGGCCAGTCAAGTACGGG < 1:23216500/66‑1 ACTTACTCACGCCGAACCCGTACTTGCCTGGCCATTAATGGCCAGTCAAGTACGGGTTCGGCGTGAGT < 1:28120381/68‑1 CTCACGCCGAACCCGTACTTGACTGGCCATTAATGGCCAGTCAAGTACGGGTTCGGCGTGAGTAAGTA > 1:34894057/1‑68 CGTACTTGACTGGCCATTAATGGCCAGTCAAGTACGGGTTCGGCGTGAGTAAGTAATCGACGTAACTG > 1:9765694/1‑68 ACTGGCCATTAATGGCCAGTCAAGTACGGGTTCGGCGTGAGTAAGTAATCGACGTAACTGGACCATA > 1:14121503/1‑67 TGGCCATTCATGGCCAGTCAAGTACGGGTTCGGCGTGAGTAAGTAATCGACGTAACTGGACCATATCG < 1:34635748/68‑1 TGGCCATTAATGGCCAGTCAAGTACGGGTTCGGCGTGAGTAAGTAATCGACGTAACTGGACCATATCG < 1:13911784/68‑1 TGGCCATTAATGGCCAGTCAAGTACGGGTTCGGCGTGAGTAAGTAATCGACGTAACTGGACCATATCG < 1:31405994/68‑1 TGGCCATTAATGGCCAGTCAAGTACGGGTTCGGCGTGAGTAAGTAATCGACGTAACTGGACCATATCG < 1:28155641/68‑1 GCCATTAATGGCCAGTCAAGTACGGGTTCGGCGTGAGTAAGTAATCGACGTAACTGGACCATATCG > 1:21513536/1‑66 GCCATTAATGGCCAGTCAAGTACGGGTTCGGCGTGAGTAAGTAATCGACGTAACTGGACCATATCG > 1:16700039/1‑66 CCATTAATGGCCAGTCAAGTACGGGTTCGGCGTGAGTAAGTAATCGACGTAACTGGACCATATCG > 1:1291980/1‑65 CCATTAATGGCCAGTCAAGTACGGGTTCGGCGTGAGTAAGTAATCGACGTAACTGGACCATATCG > 1:5716488/1‑65 CATTAATGGCCAGTCAAGTACGGGTTCGGCGTGAGTAAGTAATCGAGGTAACTGGACCATATCG > 1:7232304/1‑64 CATTAATGGCCAGTCAAGTACGGGTTCGGCGTGAGTAAGTAATCGACGTAACTGGACCATATCGGCTG < 1:4938836/68‑1 CATTAATGGCCAGTCAAGTACGGGTTCGGCGTGAGTAAGTAATCGACGTAACTGGACCATATCGGCTG < 1:26451403/68‑1 CATTAATGGCCAGTCAAGTACGGGTTCGGCGTGAGTAAGTAATCGACGTAACTGGACCATATCGGCTG < 1:36379036/68‑1 CATTAATGGCCAGTCAAGTACGGGTTCGGCGTGAGTAAGTAATCGACGTAACTGGACCATATCGGCTG < 1:29680508/68‑1 CATTAATGGCCAGTCAAGTACGGGTTCGGCGTGAGTAAGTAATCGACGTAACTGGACCATATCGGCTG < 1:8716550/68‑1 ATTAATGGCCAGTCAAGTACGGGTTCGGCGTGAGTAAGTAATCGACGTAACTGGACCATATCGGCTGT < 1:3315761/68‑1 ATTAATGGCCAGTCAAGTACGGGTTCGGCGTGAGTAAGTAATCGACGTAACTGGACCATATCGGCTGT < 1:32242961/68‑1 ATTAATGGCCAGTCAAGTACGGGTTCGGCGTGAGTAAGTAATCGACGTAACTGGACCATATCGGCTGT < 1:11289185/68‑1 AATGGCCAGTCAAGTACGGGTTCGGCGTGAGTAAGTAATCGACGTAACTGGACCATATCGGCTGTTCT < 1:20999661/68‑1 AATGGCCAGTCAAGTACGGGTTCGGCGTGAGTAAGTAATCGACGTAACTGGACCATATCGGCTGTTCT < 1:35617898/68‑1 AATGGCCAGTCAAGTACGGGTTCGGCGTGAGTAAGTAATCGACGTAACTGGACCATATCGGCTGTTCT < 1:7638549/68‑1 AATGGCCAGTCAAGTACGGGTTCGGCGTGAGTAAGTAATCGACGTAACTGGACCATATCGGCTGTTCT < 1:19864086/68‑1 AATGGCCAGTCAAGTACGGGTTCGGCGTGAGTAAGTAATCGACGTAACTGGACCATATCGGCTGTTCT < 1:17161738/68‑1 AATGGCCAGTCAAGTACGGGTTCGGCGTGAGTAAGTAATCGACGTAACTGGACCATATCGGCTGT > 1:4608905/1‑65 ATGGCCAGTCAAGTACGGGTTCGGCGTGAGTAAGTAATCGACGTAACTGGACCATATCGGCTGT > 1:6663533/1‑64 ATGGCCAGTCAAGTACGGGTTCGGCGTGAGTAAGTAATCGACGTAACTGGACCATATCGGCTGT > 1:7543752/1‑64 TGGCCAGTCAAGTACGGGTTCGGCGTGAGTAAGTAATCGACGTAACTGGACCATATCGGCTGT > 1:13395245/1‑63 GCCAGTCAAGTACGGGTTCGGCGTGAGTAAGTAATCGACGTAACTGGACCATATCGGCTGTTCTGTCA > 1:5169691/1‑68 GCCAGTCAAGTACGGGTTCGGCGTGAGTAAGTAATCGACGTAACTGGACCATATCGGCTGTTCTGTCA > 1:8499254/1‑68 GCCAGTCAAGTACGGGTTCGGCGTGAGTAAGTAATCGACGTAACTGGACCATATCGGCTGTTCTGTCA > 1:32802644/1‑68 GCCAGTCAAGTACGGGTTCGGCGTGAGTAAGTAATCGACGTAACTGGACCATATCGGCTGTTCTGTCA > 1:19594772/1‑68 CCAGTCAAGTACGGGTTCGGCGTGAGTAAGTAATCGACGTAACTGGACCATATCGGCTGTTCTGTCA > 1:25540483/1‑67 CCAGTCAAGTACGGGTTCGGCGTGAGTAAGTAATCGACGTAACTGGACCATATCGGCTGTTCTGTCA > 1:2905291/1‑67 CCAGTCAAGTACGGGTTCGGCGTGAGTAAGTAATCGACGTAACTGGACCATATCGGCTGTTCTGTCA > 1:25484015/1‑67 CCAGTCAAGTACGGGTTCGGCGTGAGTAAGTAATCGACGTAACTGGACCATATCGGCTGTTCTGTCA > 1:6107205/1‑67 CCAGTCAAGTACGGGTTCGGCGTGAGTAAGTAATCGACGTAACTGGACCATATCGGCTGTTCTGTCA > 1:4003029/1‑67 CCAGTCAAGTACGGGTTCGGCGTGAGTAAGTAATCGACGTAACTGGACCATATCGGCTGTTCTGTCA > 1:35856730/1‑67 CCAGTCAAGTACGGGTTCGGCGTGAGTAAGTAATCGACGTAACTGGACCATATCGGCTGTTCTGTCA > 1:34013695/1‑67 CCAGTCAAGTACGGGTTCGGCGTGAGTAAGTAATCGACGTAACTGGACCATATCGGCTGTTCTGTCA > 1:15936397/1‑67 CCAGTCAAGTACGGGTTCGGCGTGAGTAAGTAATCGACGTAACTGGACCATATCGGCTGTTCTGTCA > 1:19168792/1‑67 CCAGTCAAGTACGGGTTCGGCGTGAGTAAGTAATCGACGTAACTGGACCATATCGGCTGTTCTGTCA > 1:18342440/1‑67 CAGTCAAGTACGGGTTCGGCGTGAGTAAGTAATCGACGTAACTGGACCATATCGGCTGTTCTGTCAGC < 1:12219100/68‑1 GCTGACAGAACAGCCGATATGGTCCAGTTACGTCGATTACTTACTCACGCCGAACCCGTACTTGACTGGCCATTAATGGCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/2875675‑2875593‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggccattaatggccagTCAAGTACGGGTTCGGCGTGAGTAAGTAATCGACGTAACTGGACCATATCGGCTGTTCTGTCAGC > CP009273/2875611‑2875675 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |