| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 2974100 | NA (NA) | 10 (0.030) | 6/90 | NT | NA | noncoding (9/23 nt) | REP208 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP208 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | = 2974105 | NA (NA) | noncoding (14/23 nt) | REP208 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP208 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
Only 100 of 233 total aligned reads displayed.
CAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/2974023‑2974100‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggccggatgtGCTGTACATCCGGCCCTTTTTTCGTTAATAGAGATTGGGCACTTGGCCGTTGAGGCGTTTGTCTCGT < CP009273/2974105‑2974039 CAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCATACTCTATTAACGAAAAAAG > 1:454317/1‑68CAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAG > 1:27670452/1‑68 AAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGGCCAATATCTTTTTAAGAAAAAAGG > 1:10746878/1‑68 AAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGATAAAAGG > 1:4863003/1‑68 AGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGG < 1:13865039/68‑1 AGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGG < 1:37073308/68‑1 GCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCC > 1:32415206/1‑68 GCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCC > 1:15252367/1‑68 GCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCC > 1:181956/1‑68 GCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCC > 1:3767185/1‑68 GCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCC > 1:17616476/1‑68 GCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCC > 1:18443957/1‑68 GCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCC > 1:12400391/1‑68 GCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCC > 1:33203030/1‑68 GCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCC > 1:24780155/1‑68 GCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCC > 1:20644236/1‑68 CTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAGAAGGGCCG > 1:34618696/1‑68 CTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGC < 1:24402608/66‑1 TGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGG > 1:28639372/1‑68 TGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCG < 1:23926814/67‑1 TGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCG < 1:3306327/67‑1 TGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCG < 1:30445752/67‑1 TGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCG < 1:8900833/67‑1 TGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCG < 1:11780251/67‑1 GAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGA < 1:716031/68‑1 GAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGA < 1:22162242/68‑1 GAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGA < 1:21499071/68‑1 GAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGA < 1:33973152/68‑1 GAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGA < 1:26729469/68‑1 GAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGA < 1:28764443/68‑1 GAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGA < 1:12930829/68‑1 GAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGA < 1:4704888/68‑1 GAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGA < 1:17996844/68‑1 GAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGA < 1:422008/68‑1 GAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGA < 1:24099653/68‑1 AATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGAT < 1:14793190/68‑1 ATAAGGAACGAGACAACCGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGAT < 1:20306147/67‑1 ATAAGGAACGAGACAAACGCCTCACCGGCCACGTGCCCAATCTCTATTAACGAAACAAGGGCCGGATG > 1:9806804/1‑68 ATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATG < 1:25075815/68‑1 ATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATG > 1:32536762/1‑68 ATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATG > 1:30668663/1‑68 ATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGAT < 1:34402183/67‑1 ATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGAT < 1:5633847/67‑1 ATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGAT < 1:13582332/67‑1 ATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGAT < 1:15615641/67‑1 ATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGAT < 1:4074050/67‑1 ATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGAT < 1:16727931/67‑1 ATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGAT < 1:1708525/67‑1 ATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGAT < 1:18944826/67‑1 ATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGAT < 1:20271838/67‑1 ATAAGGAACGAGACAAACGCCTCAACGCCCAAGTGCCCAATCTCTATTAACGAACAAACGGCCGGAT < 1:34786883/67‑1 TAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGT < 1:3954041/68‑1 TAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGT < 1:36466621/68‑1 TAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGT < 1:35617458/68‑1 TAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGT < 1:34165410/68‑1 TAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGT < 1:32044046/68‑1 TAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGT < 1:3150872/68‑1 TAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGT < 1:31068220/68‑1 TAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGT < 1:9655911/68‑1 TAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGT < 1:10579436/68‑1 TAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGT < 1:29835942/68‑1 TAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGT < 1:13643311/68‑1 TAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGT < 1:14166921/68‑1 TAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGT < 1:16449032/68‑1 TAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGT < 1:21298705/68‑1 TAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGT < 1:21795844/68‑1 TAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGT < 1:23188143/68‑1 TAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGT < 1:28334705/68‑1 AAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGT > 1:7138468/1‑67 AAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGT > 1:17590146/1‑67 GAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTcca > 1:16003603/1‑64 CTCTATTAACGAAAAAAGGGCCGGATGTGCTGTACATCCGGCCCTTTTTTCGTTAATAGAGATTGGGC > 1:9250326/1‑68 CTCTATTAACGAAAAAAGGGCCGGATGTGCTGTACATCCGGCCCTTTTTTCGTTAATAGAGATTGGGC > 1:19875928/1‑68 TCTATTAACGAAAAAAGGGCCGGATGTGCTGTACAGCCGGCCGGTTTTTCGTTAATAGAGATTGGGC > 1:2293994/1‑67 CGAAAAAAGGGCCGGATGTGCTGTACATCCGGCCCTTTTTTCGTTAATAGAGATTGGGCACTTGGCCG > 1:31783264/1‑68 GGGCCGGATGTGCTGTACATCCGGCCCTTTTTTCGTTAATAGAGATTGGGCACTTGGCCGTTGAGGCG < 1:2592039/68‑1 GGGCCGGATGTGCTGTACATCCGGCCCTTTTTTCGTTAATAGAGATTGGGCACTTGGCCGTTGAGGCG < 1:32992541/68‑1 GGGCCGGATGTGCTGTACATCCGGCCCTTTTTTCGTTAATAGAGATTGGGCACTTGGCCGTTGAGGCG < 1:5330952/68‑1 GGGCCGGATGTGCTGTACATCCGGCCCTTTTTTCGTTAATAGAGATTGGGCACTTGGCCGTTGAGGCG > 1:13175594/1‑68 GGGCCGGATGTGCTGTACATCCGGCCCTTTTTTCGTTAATAGAGATTGGGCACTTGGCCGTTGAGGCG < 1:29306966/68‑1 GCCGGATGTGCTGTACATCCGGCCCTTTTTTCGTTAATAGAGATTGGGCACTTGGCCGTTGAGGCGTT > 1:5887420/1‑68 GGATGTGCTGTACATCCGGCCCTTTTTTCGTTAATAGAGATTGGGCACTTGGCCGTTGAGGCGTTTGT < 1:12181207/68‑1 GGATGTGCTGTACATCCGGCCCTTTTTTCGTTAATAGAGATTGGGCACTTGGCCGTTGAGGCGTTTGT < 1:31877051/68‑1 GGATGTGCTGTACATCCGGCCCTTTTTTCGTTAATAGAGATTGGGCACTTGGCCGTTGAGGCGTTTGT < 1:36188598/68‑1 GGATGTGCTGTACATCCGGCCCTTTTTTCGTTAATAGAGATTGGGCACTTGGCCGTTGAGGCGTTTGT < 1:8046206/68‑1 GGATGTGCTGTACATCCGGCCCTTTTTTCGTTAATAGAGATTGGGCACTTGGCCGTTGAGGCGTTTGT < 1:24747494/68‑1 GGATCTGCTGTACATCCGGCCCTTTTTTCGTTAATAGAGATTGGGCACTTGGCCGTTGAGGCGTTTGT < 1:26848350/68‑1 ATGTGCTGTACATCCGGCCCTTTTTTCGTTAATAGAGATTGGGCACTTGGCCGTTGAGGCGTTTGTC < 1:18813162/67‑1 TGTGCTGTACATCCGGCCCTTTTTTCGTTAATAGAGATTGGGCACTTGGCCGTTGAGGCGTTTGTCTC > 1:10058466/1‑68 TGTGCTGTACATCCGGCCCTTTTTTCGTTAATAGAGATTGGGCACTTGGCCGTTGAGGCGTTTGTCTC > 1:11106597/1‑68 TGTGCTGTACATCCGGCCCTTTTTTCGTTAATAGAGATTGGGCACTTGGCCGTTGAGGCGTTTGTCTC > 1:18294286/1‑68 TGTGCTGTACATCCGGCCCTTTTTTCGTTAATAGAGATTGGGCACTTGGCCGTTGAGGCGTTTGTCTC > 1:35465737/1‑68 TGTGCTGTACATCCGGCCCTTTTTTCGTTAATAGAGATTGGGCACTTGGCCGTTGAGGCGTTTGTCTC > 1:23846353/1‑68 TGTGCTGTACATCCGGCCCTTTTTTCGTTAATAGAGATTGGGCACTTGGCCGTTGAGGCGTTTGTCTC > 1:25842592/1‑68 TGTGCTGTACATCCGGCCCTTTTTTCGTTAATAGAGATTGGGCACTTGGCCGTTGAGGCGTTTGTCTC > 1:29570794/1‑68 GTGCTGTACATCCGGCCCTTTTTTCGTTAATAGAGATTGGGCACTTGGCCGTTGAGGCGTTTGTCTCG > 1:11884809/1‑68 GTGCTGTACATCCGGCCCTTTTTTCGTTAATAGAGATTGGGCACTTGGCCGTTGAGGCGTTTGTCTCG > 1:7676126/1‑68 GTGCTGTACATCCGGCCCTTTTTTCGTTAATAGAGATTGGGCACTTGGCCGTTGAGGCGTTTGTCTCG > 1:33714958/1‑68 TGCTGTACATCCGGCCCTTTTTTCGTTAATAGAGATTGGGCACTTGGCCGTTGAGGCGTTTGTCTCGT > 1:11467717/1‑68 TGCTGTACATCCGGCCCTTTTTTCGTTAATAGAGATTGGGC < 1:6892602/41‑1 CAAGGCTGAATAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/2974023‑2974100‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggccggatgtGCTGTACATCCGGCCCTTTTTTCGTTAATAGAGATTGGGCACTTGGCCGTTGAGGCGTTTGTCTCGT < CP009273/2974105‑2974039 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |