| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 2974100 | NA (NA) | 10 (0.030) | 6/90 | NT | NA | noncoding (9/23 nt) | REP208 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP208 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | = 2974105 | NA (NA) | noncoding (14/23 nt) | REP208 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP208 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
Only 100 of 486 total aligned reads displayed.
TAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCG > CP009273/2974033‑2974167 | tAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGT < 1:9766619‑M1/68‑1 (MQ=255)tAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGT < 1:3954041‑M1/68‑1 (MQ=255)tAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGT < 1:32737414‑M1/68‑1 (MQ=255)tAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGT < 1:3139452‑M1/68‑1 (MQ=255)tAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGT < 1:31092995‑M1/68‑1 (MQ=255)tAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGT < 1:1363375‑M1/68‑1 (MQ=255)tAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGT < 1:14166921‑M1/68‑1 (MQ=255)tAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGT < 1:21298705‑M1/68‑1 (MQ=255)tAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGT < 1:18159368‑M1/68‑1 (MQ=255) aGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTAc > 1:17280524/1‑68 (MQ=255) ggAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACa > 1:28293603/1‑68 (MQ=255) gAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACa > 1:4259642/1‑67 (MQ=255) gAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACa > 1:33357170/1‑67 (MQ=255) gAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACa > 1:15129115/1‑67 (MQ=255) gAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCCATTAACGAAAAAAGGGCCGGATGTACa > 1:21848778/1‑67 (MQ=255) aCGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGc > 1:10276327/1‑67 (MQ=255) cGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCac > 1:23506272‑M2/1‑66 (MQ=255) cGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCac < 1:4647735‑M2/68‑3 (MQ=255) gagaCAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCaca > 1:28769635‑M2/1‑65 (MQ=255) gagaCAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCaca > 1:32442351‑M2/1‑65 (MQ=255) gagaCAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCaca > 1:37155141‑M2/1‑65 (MQ=255) gagaCAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCaca > 1:11106597‑M2/1‑65 (MQ=255) gagaCAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCaca > 1:20332143‑M2/1‑65 (MQ=255) gagaCAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCaca > 1:20218225‑M2/1‑65 (MQ=255) aCAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAACGGGCCGGATGTACAGCacatcc < 1:15536802‑M2/68‑7 (MQ=255) aCAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCacatcc < 1:20645338‑M2/68‑7 (MQ=255) aCAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCacatcc < 1:26770695‑M2/68‑7 (MQ=255) aCAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCacatcc < 1:33790659‑M2/68‑7 (MQ=255) aCAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCacatcc < 1:8046206‑M2/68‑7 (MQ=255) aCAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCacatcc < 1:18461590‑M2/68‑7 (MQ=255) cGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCacatccggccc > 1:13175594‑M2/1‑57 (MQ=255) cGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCacatccggccc < 1:5330952‑M2/68‑12 (MQ=255) cGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCacatccggccc < 1:30878059‑M2/68‑12 (MQ=255) cGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCacatccggccc < 1:9586966‑M2/68‑12 (MQ=255) cGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCacatccggccc < 1:1761383‑M2/68‑12 (MQ=255) cGCCTCAACGGCCAAGTGCCCAATCTCTATTAACCAAAAAACGGCCGGATGAACAGCacatccggcc < 1:33037239‑M2/67‑11 (MQ=255) gCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCg < 1:186889/68‑1 (MQ=255) gCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCg > 1:3658798/1‑68 (MQ=255) ccTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGt > 1:30650078/1‑68 (MQ=255) tCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGa > 1:9230592/1‑68 (MQ=255) aCGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGaaa > 1:16391268/1‑67 (MQ=255) aCGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGaaa > 1:5886095/1‑67 (MQ=255) aCGGCCAAGTGACCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGaaa > 1:24948272/1‑67 (MQ=255) ggCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCa > 1:20064084/1‑68 (MQ=255) ggCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCa > 1:18874326/1‑68 (MQ=255) tGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCg > 1:19126141/1‑68 (MQ=255) gCCCAATCTCTATTAACGAAAAACGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGcc < 1:23205658/66‑1 (MQ=255) gCCCAATCTCTATTAACGAAAAACCGGCCGGCTGTACAGCacatccggcccttttttcgttaataga > 1:2293994‑M2/1‑40 (MQ=255) gCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGcc < 1:35110204/66‑1 (MQ=255) accAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCTat > 1:2233334/2‑68 (MQ=255) ccAATCTCTATTAACGAAAAAAGGGCCGGATGTACGGGGCGTCCGGCCCGTGAAATCAGACGCCGata > 1:34735068/1‑68 (MQ=255) aaTCTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATAtt < 1:19369013/68‑1 (MQ=255) aTCTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATAtt > 1:29494692/1‑67 (MQ=255) tctcTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTtc < 1:19603849/68‑1 (MQ=255) ctctATTACCGAAAAAAGGGCCGGATGTACAGCacacccggcccttttttcgttaatagagattgggc > 1:17802042‑M2/1‑33 (MQ=255) ctctATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTtc > 1:11465197/1‑67 (MQ=255) ctctATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTtc > 1:26305694/1‑67 (MQ=255) ctctATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTtc > 1:5076654/1‑67 (MQ=255) ctctATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTtc > 1:7215713/1‑67 (MQ=255) ctctATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTtc > 1:7735255/1‑67 (MQ=255) tctATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTtctc > 1:18359803/1‑68 (MQ=255) tATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATAtt < 1:36332462/62‑1 (MQ=255) aTTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCa > 1:1002553/1‑66 (MQ=255) ttAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACt > 1:25187045/1‑68 (MQ=255) ttAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACt > 1:21683607/1‑68 (MQ=255) ttAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACt > 1:6632250/1‑68 (MQ=255) ttAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACt > 1:31613234/1‑68 (MQ=255) ttAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACt > 1:16052831/1‑68 (MQ=255) ttAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACt > 1:29695326/1‑68 (MQ=255) ttAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACt > 1:1290875/1‑68 (MQ=255) ttAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCCATATTTCTCAACt > 1:2459638/1‑68 (MQ=255) cGAAAAAAGGGCCGGATGTgctgtacatccggcccttttttcgttaatagagattgggcacttggccg > 1:31783264‑M1/1‑19 (MQ=255) cGAAAAAAGGGCCGGATGTACAGCCCATCCGGCCCGTGAAATCAGACGCGGATATTTCTCAACTtctc > 1:8572283/1‑68 (MQ=255) cGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGATATCAGACGCCGATATTTCTCAACTtctc > 1:6112946/1‑68 (MQ=255) cGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTtctc > 1:1585231/1‑68 (MQ=255) cGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTtctc > 1:28543978/1‑68 (MQ=255) cGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTtctc > 1:35608165/1‑68 (MQ=255) cGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTtctc > 1:6947072/1‑68 (MQ=255) cGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTtctc > 1:12251968/1‑68 (MQ=255) aaaaaGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGcc < 1:30494507/68‑1 (MQ=255) aaaaaGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGcc < 1:16539221/68‑1 (MQ=255) aaaGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTg < 1:446119/68‑1 (MQ=255) aaaGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTg < 1:14598005/68‑1 (MQ=255) acgggCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGc < 1:12619741/66‑1 (MQ=255) aGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCACCTTCTCGCCTGcc > 1:26525826/1‑68 (MQ=255) aGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGcc < 1:24117258/68‑1 (MQ=255) gggCCGGATGTgctgtacatccggcccttttttcgttaatagagattgggcacttggccgttgaggcg < 1:29306966‑M1/68‑58 (MQ=255) ggCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCa > 1:25602390/1‑67 (MQ=255) ccGGATGTgctgtacatccggcccttttttcgttaatagagattgggcacttggccgttgaggcgtt < 1:27573758‑M1/67‑60 (MQ=255) cGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCa < 1:25867044/67‑1 (MQ=255) aTGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGttt > 1:16691871/1‑68 (MQ=255) tgtgctgtacatccggcccttttttcgttaatagagattgggcacttggccgttgaggcgtttgtctc > 1:35465737‑M1/1‑3 (MQ=255) tgtgctgtacatccggcccttttttcgttaatagagattgggcacttggccgttgaggcgtttgtctc > 1:23846353‑M1/1‑3 (MQ=255) tgtgctgtacatccggcccttttttcgttaatagagattgggcacttggccgttgaggcgtttgtctc > 1:32138559‑M1/1‑3 (MQ=255) tGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCACAACTTCTCGCCTGCCATCAGttt > 1:24397560/1‑67 (MQ=255) gtgctgtacatccggcccttttttcgttaatagagattgggcacttggccgttgaggcgtttgtctcg > 1:33714958‑M1/1‑2 (MQ=255) gtgctgtacatccggcccttttttcgttaatagagattgggcacttggccgttgaggcgtttgtctcg > 1:11884809‑M1/1‑2 (MQ=255) gTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGc < 1:36046675/68‑1 (MQ=255) tgctgtacatccggcccttttttcgttaatagagattgggcacttggccgttgaggcgtttgtctcgt > 1:32026623‑M1/1‑1 (MQ=255) tACAGCACATCCGGCCCGTGAAATCAGAAGCCGATATTTCTCAACTGCTCGCCTGCCATCAGTTTGCg > 1:13853559/1‑68 (MQ=255) | TAAGGAACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCG > CP009273/2974033‑2974167 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |