| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 2974100 | NA (NA) | 10 (0.030) | 6/90 | NT | NA | noncoding (9/23 nt) | REP208 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP208 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | = 2974105 | NA (NA) | noncoding (14/23 nt) | REP208 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP208 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
Only 100 of 396 total aligned reads displayed.
AACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTCGA > CP009273/2974038‑2974172 | aaCGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGc > 1:16609310/1‑68 (MQ=255) aCGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGc > 1:23690190/1‑67 (MQ=255) aCGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCa > 1:32026623‑M2/1‑67 (MQ=255) aCGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCa > 1:11467717‑M2/1‑67 (MQ=255) gagaCAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCaca > 1:18524293‑M2/1‑65 (MQ=255) gagaCAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCaca > 1:32442351‑M2/1‑65 (MQ=255) gagaCAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCaca > 1:18294286‑M2/1‑65 (MQ=255) gagaCAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCaca > 1:4286846‑M2/1‑65 (MQ=255) aCAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCagatcc < 1:26848350‑M2/68‑7 (MQ=255) aCAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCacatcc < 1:12297208‑M2/68‑7 (MQ=255) aCAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCacatcc < 1:36188598‑M2/68‑7 (MQ=255) aCAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCacatcc < 1:33790659‑M2/68‑7 (MQ=255) aCAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCacatcc < 1:12181207‑M2/68‑7 (MQ=255) aCAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCacatcc < 1:8046206‑M2/68‑7 (MQ=255) aaCGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCacatccggc > 1:5887420‑M2/1‑59 (MQ=255) aaCGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCacatccgg < 1:27573758‑M2/67‑9 (MQ=255) cGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCacatccggccc > 1:26461462‑M2/1‑57 (MQ=255) cGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCacatccggccc < 1:30878059‑M2/68‑12 (MQ=255) cGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCacatccggccc < 1:9586966‑M2/68‑12 (MQ=255) cGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCacatccggccc < 1:1761383‑M2/68‑12 (MQ=255) gCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCg > 1:18824278/1‑68 (MQ=255) gCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCg < 1:9825431/68‑1 (MQ=255) gCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCg < 1:35591733/68‑1 (MQ=255) gCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCg > 1:4939929/1‑68 (MQ=255) cTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGt < 1:36529283/67‑1 (MQ=255) tCAACGGCCAAGTGCCCAATCTCTAGTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGa > 1:20070312/1‑68 (MQ=255) aCGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGaaa > 1:28919501/1‑67 (MQ=255) aCGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGaaa > 1:30633494/1‑67 (MQ=255) aCGGCCAAGTGACCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGaaa > 1:24948272/1‑67 (MQ=255) ggCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCa > 1:14164191/1‑68 (MQ=255) gCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAATTCAg > 1:22706812/1‑68 (MQ=255) aGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACg > 1:26722593/1‑67 (MQ=255) aGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACg > 1:37003488/1‑67 (MQ=255) aGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACg > 1:25694617/1‑67 (MQ=255) aGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACg > 1:20461607/1‑67 (MQ=255) tGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCg > 1:19126141/1‑68 (MQ=255) gCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCa < 1:6892602‑M2/41‑2 (MQ=255) cccAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGat < 1:33336023/68‑1 (MQ=255) accAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCTat > 1:2233334/2‑68 (MQ=255) ccAATCTCTATTAACGAAAAAAGGGCCGGATGTACGGGGCGTCCGGCCCGTGAAATCAGACGCCGata > 1:34735068/1‑68 (MQ=255) ccAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGat < 1:31217828/67‑1 (MQ=255) aaTCTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATAtt < 1:32709601/68‑1 (MQ=255) aaTCTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATAtt < 1:3923724/68‑1 (MQ=255) aaTCTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATAtt < 1:19369013/68‑1 (MQ=255) aTCTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATAtt > 1:1446567/1‑67 (MQ=255) tctcTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTtc < 1:16058097/68‑1 (MQ=255) ctctATTACCGAAAAAAGGGCCGGATGTACAGCacacccggcccttttttcgttaatagagattgggc > 1:17802042‑M2/1‑33 (MQ=255) ctctATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTtc > 1:21238293/1‑67 (MQ=255) ctctATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTtc > 1:183925/1‑67 (MQ=255) ctctATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTtc > 1:5506419/1‑67 (MQ=255) ctctATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTtc > 1:7735255/1‑67 (MQ=255) tctATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTtctc > 1:4479618/1‑68 (MQ=255) tctATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTtctc > 1:7539499/1‑68 (MQ=255) tctATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTtctc > 1:16897714/1‑68 (MQ=255) aTTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCa > 1:1002553/1‑66 (MQ=255) ttAACGAAAAAAGGGCCGGATGTACAGCACATCCGTACCGTGAAATAAGACGCCGATATTTCTCAACt > 1:20272404/1‑68 (MQ=255) ttAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACt > 1:1290875/1‑68 (MQ=255) ttAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACt > 1:6632250/1‑68 (MQ=255) ttAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACt > 1:31613234/1‑68 (MQ=255) ttAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACt > 1:1027562/1‑68 (MQ=255) ttAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACt > 1:29695326/1‑68 (MQ=255) ttAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACt > 1:21683607/1‑68 (MQ=255) ttAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACt > 1:25187045/1‑68 (MQ=255) ttAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCCATATTTCTCAACt > 1:2459638/1‑68 (MQ=255) ttAACGAAAAAAGGGCCGGATGTACAGCACATCCGGACCGTGAAATCAGACGCCGATATTTCTCAACt > 1:5190970/1‑68 (MQ=255) aaCGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACt > 1:35329185/1‑66 (MQ=255) cGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTtctc > 1:9279950/1‑68 (MQ=255) cGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTtctc > 1:28543978/1‑68 (MQ=255) cGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTtctc > 1:13709581/1‑68 (MQ=255) cGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTtctc > 1:18040485/1‑68 (MQ=255) aaaaaGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGcc < 1:30494507/68‑1 (MQ=255) aaaaaGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGcc < 1:22102413/68‑1 (MQ=255) aaaGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTg < 1:16519341/68‑1 (MQ=255) aaaGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTg < 1:14913373/68‑1 (MQ=255) aaaGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTg < 1:15437171/68‑1 (MQ=255) aGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGcc > 1:33706303/1‑68 (MQ=255) aGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGcc < 1:25400225/68‑1 (MQ=255) aGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGcc < 1:24117258/68‑1 (MQ=255) aGGGCCGGATGTACAGCACATACGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGcc > 1:26084479/1‑68 (MQ=255) ggCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCa > 1:29531159/1‑67 (MQ=255) gCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATc > 1:6164653/1‑68 (MQ=255) gCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATc > 1:23323782/1‑68 (MQ=255) cGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCa < 1:25867044/67‑1 (MQ=255) aTGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGttt > 1:31777875/1‑68 (MQ=255) tGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCACAACTTCTCGCCTGCCATCAGttt > 1:24397560/1‑67 (MQ=255) gTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGc < 1:36046675/68‑1 (MQ=255) gTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGc < 1:8521534/68‑1 (MQ=255) aCAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCg < 1:34967488/67‑1 (MQ=255) aCAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGt > 1:15538127/1‑68 (MQ=255) caccacaaccggcccttttttcgttaaaagagattgggcacttggccgttgaggcgtttgtctcgttc > 1:11148854‑M2/1‑4 (MQ=255) cAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGt > 1:15800439/1‑67 (MQ=255) aGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTc > 1:23056385/1‑68 (MQ=255) aGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTc > 1:19816091/1‑68 (MQ=255) aGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTc > 1:19533845/1‑68 (MQ=255) aGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTc > 1:17395191/1‑68 (MQ=255) aGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTc > 1:10473554/1‑68 (MQ=255) gCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTCg > 1:13284156/1‑68 (MQ=255) gCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTCg > 1:9214660/1‑68 (MQ=255) gCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTCg > 1:29318727/1‑68 (MQ=255) gCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTCg > 1:15936453/1‑68 (MQ=255) | AACGAGACAAACGCCTCAACGGCCAAGTGCCCAATCTCTATTAACGAAAAAAGGGCCGGATGTACAGCACATCCGGCCCGTGAAATCAGACGCCGATATTTCTCAACTTCTCGCCTGCCATCAGTTTGCGTTCGA > CP009273/2974038‑2974172 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |