| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 3147712 | 283 (0.640) | 19 (0.050) | 10/94 | NT | 6.3% | coding (866/957 nt) | yqhC | transcriptional activator of yqhD |
| ? | CP009273 | = 3147725 | 331 (0.890) | coding (853/957 nt) | yqhC | transcriptional activator of yqhD | |||||
Only 100 of 119 total aligned reads displayed.
CCCGCATTCTTGCCGCATCTTCCCCCGGCGTCACACCGAAGTAACGTTTAAACTCACGGCT‑AAATTGCGATGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/3147638‑3147712‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgatgcgcGTCGGCTATGAAAGCGCATCGCAATTTAGCCGTGAGTTTAAACGTTACTTCGGTGTGACGCCGGGGG < CP009273/3147725‑3147659 CCCGCATTCTTGCCGCATCTTCCCCCGGCGTCACACCGAAGTAACGTTTAAACTCACGGCT‑AAATTGC > 1:34931386/1‑68 CCGCATTCTTGCCGCATCTTCCCCCGGCGTCACACCGAAGTAACGTTTAAACTCACGGCT‑AAATTGCG > 1:15818870/1‑68 CCGCATTCTTGCCGCATCTTCCCCCGGCGTCACACCGAAGTAACGTTTAAACTCACGGCT‑AAATTGCG > 1:28054518/1‑68 CCGCATTCTTGCCGCATCTTCCCCCGGCGTCACACCGAAGTAACGTTTAAACTCACGGCT‑AAATTGCG > 1:28375781/1‑68 CCGCATTCTTGCCGCATCTTCCCCCGGCGTCACACCGAAGTAACGTTTAAACTCACGGCT‑AAATTGCG > 1:36947478/1‑68 CCGCATTCTTGCCGCATCTTCCCCCGGCGTCACACCGAAGTAACGTTTAAACTCACGGCT‑AAATTGCG > 1:24989671/1‑68 CCGCATTCTTGCCGCATCTTCCCCCGGCGTCACACCGAAGTAACGTTTAAACTCACGGCT‑AAATTGCG > 1:18842554/1‑68 CCGCATTCTTGCCGCATCTTCCCCCGGCGTCACACCGAAGTAACGTTTAAACTCACGGCT‑AAATTGCG > 1:25646354/1‑68 CCGCATTCTTGCCGCATCTTCCCCCGGCGTCACACCGAAGTAACGTTTAAACTCACGGCT‑AAATTGC < 1:28754957/67‑1 CCGCATTCTTGCCGCATCTTCCCCCGGCGTCACACCGAAGTAACGTTTAAACTCACGGCT‑AAATTGC < 1:30577503/67‑1 CCGCATTCTTGCCGCATCTTCCCCCGGCGTCACACCGAAGTAACGTTTAAACTCACGGCT‑AAATTGC < 1:2510640/67‑1 CCGCATTCTTGCCGCATCTTCCCCCGGCGTCACACCGAAGTAACGTTTAAACTCACAGCT‑AAATTGCG > 1:34598134/1‑68 CCGCATTCTTGCCGCATCTTCCCCCGGCGTCACACCGAAGTAAAGTTTAAACTCACGGCT‑AAATTGCG > 1:11377713/1‑68 ATTCTTGCCGCATCTTCCCCCGGCGTCACACCGAAGTAACGTTTAAACTCACGGCT‑AAATTGCGATGC < 1:16856534/68‑1 ATTCTTGCCGCATCTTCCCCCGGCGTCACACCGAAGTAACGTTTAAACTCACGGCT‑AAATTGCGATGC < 1:19046723/68‑1 TTCTTGCCGCATCTTCCCCCGGCGTCACACCGAAGTAACGTTTAAACTCACGGCTAAAATTGCGATGC < 1:12536424/68‑1 TTCTTGCCGCATCTTCCCCCGGCGTCACACCGAAGTAACGTTTAAACTCACGGCT‑AAATTGCGATGCG < 1:23185914/68‑1 TTCTTGCCGCATCTTCCCCCGGCGTCACACCGAAGTAACGTTTAAACTCACGGCT‑AAATTGCGATGCG < 1:22527619/68‑1 TTCTTGCCGCATCTTCCCCCGGCGTCACACCGAAGTAACGTTTAAACTCACGGCT‑AAATTGCGATGCG < 1:4255309/68‑1 TTCTTGCCGCATCTTCCCCCGGCGTCACACCGAAGTAACGTTTAAACTCACGGCT‑AAATTGCGATGCG < 1:23722720/68‑1 TTCTTGCCGCATCTTCCCCCGGCGTCACACCGAAGTAACGTTTAAACTCACGGCT‑AAATTGCGATGCG < 1:12121266/68‑1 TTCTTGCCGCATCTTCCCCCGGCGTCACACCGAAGTAACGTTTAAACTCACGGCT‑AAATTGCGATGCG < 1:19601586/68‑1 TTCTTGCCGCATCTTCCCCCGGCGTCACACCGAAGTAACGTTTAAACTCACGGCT‑AAATTGCGATGCG < 1:23932108/68‑1 TTCTTGCCGCATCTTCCCCCGGCGTCACACCGAAGTAACGTTTAAACTCACGGCT‑AAATTGCGATGC > 1:28125111/1‑67 TTCTTGCCGCATCTTCCCCCGGCGTCACACCGAAGTAACGTTTAAACTCACGGCT‑AAATTGCGATGC > 1:15405137/1‑67 TTCTTGCCGCATCTTCCCCCGGCGTCACACCGAAGTAACCTTTAAACTCACGGCT‑AAATTGCGATGCG < 1:35878745/68‑1 TCTTGCCGCATCTTCCCCCGGCGTCACACCGAAGTAACGTTTAACCTCACGGCT‑AAATTGCGATGC > 1:16628905/1‑66 TCTTGCCGCATCTTCCCCCGGCGTCACACCGAAGTAACGTTTAAACTCACGGCT‑AAATTGCGATGC > 1:24644668/1‑66 TCTTGCCGCATCTTCCCCCGGCGTCACACCGAAGTAACGTTTAAACTCACGGCT‑AAATTGCGATGC > 1:26944995/1‑66 TCTTGCCGCATCTTCCCCCGGCGTCACACCGAAGTAACGTTTAAACTCACGGCT‑AAATTGCGATGC > 1:3646226/1‑66 TCTTGCCGCATCTTCCCCCGGCGTCACACCGAAGTAACGTTTAAACTCACGGCT‑AAATTGCGATGC > 1:29485582/1‑66 TCTTGCCGCATCTTCCCCCGGCGTCACACCGAAGTAACGTTTAAACTCACGGCT‑AAATTGCGATGC > 1:30824033/1‑66 TCTTGCCGCATCTTCCCCCGGCGTCACACCGAAGTAACGTTTAAACTCACGGCT‑AAATTGCGATGC > 1:20695205/1‑66 GCGTCACACCGAAGTAACGTTTAAACTCACGGCT‑AAATTGCGATGCGCGTCGGCTATGAAAGCGCATC > 1:22176683/1‑68 CCGAAGTAACGTTTAAACTCACGGCT‑AAATTGCGATGCGCGTCGGCTATGAAAGCGCATCGCAATTTA > 1:10179357/1‑68 CGAAGTAACGTTTAAACTCACGGCT‑AAATTGCGATGCGCGTCGGCTATGAAAGCGCATCGCAATTTA > 1:1380353/1‑67 AAGTAACGTTTAAACTCACGGCT‑AAATTGCGATGCGCGTCGGCTATGAAAGCGCATCGCAATTTAGCC > 1:26718313/1‑68 AGTAACGTTTAAACTCACGGCT‑AAATTGCGATGCGCGTCGGCTATGAAAGCGCATCGCAATTTAGCCG > 1:29062509/1‑68 GTAACGTTTAAACTCACGGCT‑AAATTGCGATGCGCGTCGGCTATGAAAGCGCATCGCAATTTAGCCGT > 1:30605258/1‑68 gtACGTTTAAACTCACGGCT‑AAATTGCGATGCGCGTCGGCTATGAAAGCGCATCGCAATTTAGCCGTG > 1:24114369/3‑68 gtACGTTTAAACTCACGGCT‑AAATTGCGATGCGCGTCGGCTATGAAAGCGCATCGCAATTTAGCCGTG > 1:24072085/3‑68 AACGTTTAAACTCACGGCT‑AAATTGCGATGCGCGTCGGCTATGAAAGCGCATCGCAATTTAGCCGTGA > 1:30364709/1‑68 CGTTTAAACTCACGGCT‑AAATTGCGATGCGCGTCGGCTATGAAAGCGCATCGCAATTTAGCCGTGAGT > 1:14044704/1‑68 CGTTTAAACTCACGGCT‑AAATTGCGATGCGCGTCGGCTATGAAAGCGCATCGCAATTTAGCCGTGAGT > 1:24703878/1‑68 CGTTTAAACTCACGGCT‑AAATTGCGATGCGCGTCGGCTATGAAAGCGCATCGCAATTTAGCCGTGAGT > 1:16862541/1‑68 GTTTAAACTCACGGCT‑AAATTGCGATGCGCGTCGGCTTTGAAAGCGCTTCGCTATTTAGCCGTGAGTT > 1:31694530/1‑68 GTTTAAACTCACGGCT‑AAATTGCGATGCGCGTCGGCTATGAAAGCGCATGGCAATTTAGCCGTGAGTT > 1:252556/1‑68 ACTCCCGGCT‑AAATTGCGATGCGCGTCGGCTATGAACGCGCATCGCAAGTTAGCCGGGTGTTTAAAgg > 1:33405267/1‑66 ACTCACGGCT‑AAATTGCGATGCGCGTCGGCTATGAAAGCGCATCGCAATTTAGCCGTGAGTTTAAACG > 1:18704979/1‑68 CT‑AAATTGCGATGCGCGTCGGCTATGAAAGCGCATCGCAATTTAGCCGTGAGTTTAAACGTTACTTgg > 1:32967167/1‑66 agcTGCGATGCGCGTCGTCTATGAAAGCGCATCGCAATTTAGCCGTGAGTTTAAACGTTACTTCGGT < 1:3488438/64‑1 TGCGATGCGCGTCGGCTATGAAAGCGCATCGCAATTTAGCCGTGAGTTTAACCGTTACTTCGGTGTG > 1:5861390/1‑67 TGCGATGCGCGTCGGCTATGAAAGCGCATCGCAATTTAGCCGTGAGTTTAAACGTTACTTCGGTGTG > 1:14296934/1‑67 TGCGATGCGCGTCGGCTATGAAAGCGCATCGCAATTTAGCCGTGAGTTTAAACGTTACTTCGGTGTG > 1:18550027/1‑67 TGCGATGCGCGTCGGCTATGAAAGCGCATCGCAATTTAGCCGTGAGTTTAAACGTTACTTCGGTGTG > 1:35770595/1‑67 TGCGATGCGCGTCGGCTATGAAAGCGCATCGCAATTTAGCCGTGAGTTTAAACGTTACTTCGGTGTG > 1:19107553/1‑67 TGCGATGCGCGTCGGCTATGAAAGCGCATCGCAATTTAGCCGTGAGTTTAAACGTTACTTCGGTGTG > 1:20549993/1‑67 TGCGATGCGCGTCCGCTATGAAAGCGCATCGCAATTTAGCCGTGAGTTTTAACGTTTCTTCGGTGTG > 1:23734916/1‑67 CGATGCGCGTCGGCTATGAAAGCGCATCGCAATTTAGCCGTGAGTTTAAACGTTACTTCGGTGTGAC > 1:5106481/1‑67 GATGCGCGTCGGCTATGAAAGCGCATCGCAATTTAGCCGTGAGTTTAAACGTTACTTCGGTGTGACGC < 1:12461101/68‑1 GATGCGCGTCGGCTATGAAAGCGCATCGCAATTTAGCCGTGAGTTTAAACGTTACTTCGGTGTGACG > 1:32617518/1‑67 GATGCGCGTCGGCTATGAAAGCGCATCGCAATTTAGCCGTGAGTTTAAACGTTACTTCGGTGTGACG > 1:6275383/1‑67 GATGCGCGTCGGCTATGAAAGCGCATCGCAATTTAGCCGTGAGTTTAAACGTTACTTCGGTGTGACG < 1:7469062/67‑1 GATGCGCGTCGGCTATGAAAGCGCATCGCAATTTAGCCGTGAGTTTAAACGTTACTTCGGTGTGACG > 1:27420931/1‑67 GATGCGCGTCGGCTATGAAAGCGCATCGCAATTTAGCCGTGAGTTTAAACGTTACTTCGGTGTGACG > 1:12255896/1‑67 GATGCGCGTCGGCTATGAAAGCGCATCGCAATTTAGCCGTGAGTTTAAACGTTACTTCGGTGTGACG > 1:14273297/1‑67 GATGCGCGTCGGCTATGAAAGCGCATCGCAATTTAGCCGTGAGTTTAAACGTTACTTCGGTGTGACG > 1:1539193/1‑67 GATGCGCGTCGGCTATGAAAGCGCATCGCAATTTAGCCGTGAGTTTAAACGTTACTTCGGTGTGACG > 1:28159144/1‑67 GATGCGCGTCGGCTATGAAAGCGCATCGCAATTTAGCCGTGAGTTTAAACGGTACTTCGGTGTGACG > 1:33353726/1‑67 TGCGCGTCGGCTATGAAAGCGCATCGCAATTTAGCCGTGAGTTTAAACGTTACTTCGGTGTGACGCCG > 1:3323871/1‑68 TGCGCGTCGGCTATGAAAGCGCATCGCAATTTAGCCGTGAGTTTAAACGTTACTTCGGTGTGACGCCG > 1:1033970/1‑68 TGCGCGTCGGCTATGAAAGCGCATCGCAATTTAGCCGTGAGTTTAAACGTTACTTCGGTGTGACGCCG > 1:10521803/1‑68 TGCGCGTCGGCTATGAAAGCGCATCGCAATTTAGCCGTGAGTTTAAACGTTACTTCGGTGTGACGCCG > 1:13425116/1‑68 TGCGCGTCGGCTATGAAAGCGCATCGCAATTTAGCCGTGAGTTTAAACGTTACTTCGGTGTGACGCCG < 1:31557231/68‑1 TGCGCGTCGGCTATGAAAGCGCATCGCAATTTAGCCGTGAGTTTAAACGTTACTTCGGTGTGACGCCG > 1:2697945/1‑68 TGCGCGTCGGCTATGAAAGCGCATCGCAATTTAGCCGTGAGTTTAAACGTTACTTCGGTGTGACGCCG > 1:25979064/1‑68 TGCGCGTCGGCTATGAAAGCGCATCGCAATTTAGCCGTGAGTTTAAACGTTACTTCGGTGTGACGCC < 1:2179953/67‑1 TGCGCGTCGGCTATGAAAGCGCATCGCAATTTAGCCGTGAGTTTAAACGTTACTTCGGTGTGACGCC < 1:11567978/67‑1 TGCGCGTCGGCTATGAAAGCGCATCGCAATTTAGCCGTGAGTTTAAACGTTACTTCGGTGTGACGCC < 1:12158767/67‑1 TGCGCGTCGGCTATGAAAGCGCATCGCAATTTAGCCGTGAGTTTAAACGTTACTTCGGTGTGACGCC < 1:21901368/67‑1 TGCGCGTCGGCTATGAAAGCGCATCGCAATTTAGCCGTGAGTTTAAACGTTACTTCGGTGTGACGCC < 1:23346886/67‑1 GCGCGTCGGCTATGAAAGCGCATCGCAATTTAGCCGTGAGTTTAAACGTTACTTCGGTGTGACGCCGG < 1:27963174/68‑1 GCGCGTCGGCTATGAAAGCGCATCGCAATTTAGCCGTGAGTTTAAACGTTACTTCGGTGTGACGCCGG < 1:27494043/68‑1 GCGCGTCGGCTATGAAAGCGCATCGCAATTTAGCCGTGAGTTTAAACGTTACTTCGGTGTGACGCCGG < 1:4595574/68‑1 GCGCGTCGGCTATGAAAGCGCATCGCAATTTAGCCGTGAGTTTAAACGTTACTTCGGTGTGACGCCGG < 1:427435/68‑1 GCGCGTCGGCTATGAAAGCGCATCGCAATTTAGCCGTGAGTTTAAACGTTACTTCGGTGTGACGCCGG < 1:29648266/68‑1 GCGCGTCGGCTATGAAAGCGCATCGCAATTTAGCCGTGAGTTTAAACGTTACTTCGGTGTGACGCCGG < 1:13926254/68‑1 GCGCGTCGGCTATGAAAGCGCATCGCAATTTAGCCGTGAGTTTAAACGTTACTTCGGTGTGACGCCGG < 1:17427463/68‑1 CGCGTCGGCTATGAAAGCGCATCGCAATTTAGCCGTGAGTTTAAACGTTACTTCGGTGTGACGCCGGG > 1:35160831/1‑68 CGCGTCGGCTATGAAAGCGCATCGCAATTTAGCCGTGAGTTTAAACGTTACTTCGGTGTGACGCCGGG > 1:33085025/1‑68 GCGTCGGCTATGAAAGCGCATCGCAATTTAGCCGTGAGTTTAAACGTTACTTCGGTGTGACGCCGGGG > 1:19075085/1‑68 GCGTCGGCTATGAAAGCGCATCGCAATTTAGCCGTGAGTTTAAACGTTACTTCGGTGTGACGCCGGGG > 1:20726651/1‑68 GCGTCGGCTATGAAAGCGCATCGCAATTTAGCCGTGAGTTTAAACGTTACTTCGGTGTGACGCCGGGG > 1:481952/1‑68 GCGTCGGCTATGAAAGCGCATCGCAATTTAGCCGTGAGTTTAAACGTTACTTCGGTGTGACGCCGGGG < 1:31966571/68‑1 GCGTCGGCTATGAAAGCGCATCGCAATTTAGCCGTGAGTTTAAACGTTACTTCGGTGTGACGCCGGGG > 1:21248926/1‑68 GCGTCGGCTATGAAAGCGCATCGCAATTTAGCCGTGAGTTTAAACGTTACTTCGGTGTGACGCCGGGG > 1:31199086/1‑68 GCGTCGGCTATGAAAGCGCATCGCAATTTAGCCGTGAGTTTAAACGTTACTTCGGTGTGACGCCGGG < 1:14020115/67‑1 GCGTCGGCTATGAAAGCGCATCGCAATTTAGCCGTGAGTTTAAACGTTACTTCGGTGTGACGCCGGG < 1:30353228/67‑1 GCGTCGGCTATGAAAGCGCATCGCAATTTAGCCGTGAGTTTAAACGTTACTTCGGTGTGACGCCGGG < 1:15814348/67‑1 GCGTCGGCTATGAAAGCGCATCGCAATTTAGCCGTGAGTTTAAACGTTACTTCGGTGTGACGCCGGG < 1:11843120/67‑1 CCCGCATTCTTGCCGCATCTTCCCCCGGCGTCACACCGAAGTAACGTTTAAACTCACGGCT‑AAATTGCGATGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/3147638‑3147712‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgatgcgcGTCGGCTATGAAAGCGCATCGCAATTTAGCCGTGAGTTTAAACGTTACTTCGGTGTGACGCCGGGGG < CP009273/3147725‑3147659 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |