| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 3454877 | 409 (0.920) | 20 (0.050) | 11/94 | NT | 5.4% | coding (51/510 nt) | gspH | putative general secretory pathway component, cryptic |
| ? | CP009273 | = 3454930 | 353 (0.950) | coding (104/510 nt) | gspH | putative general secretory pathway component, cryptic | |||||
Only 100 of 142 total aligned reads displayed.
AGCAAGAAGAAAAAGTAAGTCAGCGATGAATCAGCAACGCGGGTTTACCCTGCTGGAGATGATGCTGGTGCTGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/3454802‑3454877‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgctggcgACATCCTCCCGGCCATATGTGAAGAGCACCACGCTTGCCGTGATAGCGACCAGCGCCAGCACCAGCA < CP009273/3454930‑3454864 AGCAAGAAGAAAAAGTAAGTCAGCGATGAATCAGCAACGCGGGTTTACCCTGCTGGAGATGATGCTGG > 1:10642841/1‑68AGCAAGAAGAAAAAGTAAGTCAGCGATGAATCAGCAACGCGGGTTTACCCTGCTGGAGATGATGCTGG > 1:13641390/1‑68AGCAAGAAGAAAAAGTAAGACAGCGATGAATCAGCAACGCGGGTTTACCCTGCTGGAGATGATGCTGG > 1:15413348/1‑68 GCAAGAAGAAAAAGTAAGTCAGCGATGAATCAGCAACGCGGGTTTACCCTGCTGGAGATGATGCTGGT > 1:636272/1‑68 GCAAGAAGAAAAAGTAAGTCAGCGATGAATCAGCAACGCGGGTTTACCCTGCTGGAGATGATGCTGGT > 1:35758651/1‑68 GCAAGAAGAAAAAGTAAGTCAGCGATGAATCAGCAACGCGGGTTTACCCTGCTGGAGATGATGCTGGT > 1:30272165/1‑68 GCAAGAAGAAAAAGTAAGTCAGCGATGAATCAGCAACGCGGGTTTACCCTGCTGGAGATGATGCTGGT > 1:28196943/1‑68 GCAAGAAGAAAAAGTAAGTCAGCGATGAATCAGCAACGCGGGTTTACCCTGCTGGAGATGATGCTGGT > 1:28134320/1‑68 GCAAGAAGAAAAAGTAAGTCAGCGATGAATCAGCAACGCGGGTTTACCCTGCTGGAGATGATGCTGG < 1:22756807/67‑1 AAGCAGAAAAAGTACGGCAGCGATGAATCAGCAACGCGGGTTTACCCTGCTGGAGATGATGCTGGTG < 1:14291362/67‑1 AAGAAGAAAAAGTAAGTCAGCGATGAATCAGCAACGCGGGTTTACCCTGCTGGAGATGATGCTGGTG < 1:1528588/67‑1 AAGAAGAAAAAGTAAGTCAGCGATGAATCAGCAACGCGGGTTTACCCTGCTGGAGATGATGCTGGTG < 1:17268782/67‑1 AAGAAGAAAAAGTAAGTCAGCGATGAATCAGCAACGCGGGTTTACCCTGCTGGAGATGATGCTGGTG < 1:26722584/67‑1 AAGAAGAAAAAGTAAGTCAGCGATGAATCAGCAACGCGGGTTTACCCTGCTGGAGATGATGCTGGTG < 1:30996523/67‑1 AAGAAGAAAAAGTAAGTCAGCGATGAATCAGCAACGCGGGTTTACCCTGCTGGAGATGATGCTGGTG < 1:5663750/67‑1 AAGAAGAAAAAGTAAGTCAGCGATGAATCAGCAACGCGGGTTTACCCTGCTGGAGATGATGCTGGT < 1:24893705/66‑1 AAGAAGAAAAAGTAAGTCAGCGATGAATCAGCAACGCGGGTTTACCCTGCTGGAGATGATGCTGGT < 1:19877670/66‑1 AAGAAGAAAAAGTAAGTCAGCGATGAATCAGCAACGCGGGTTTACCCTGCTGGAGATGATGCTGGT < 1:26778625/66‑1 AAGAAGAAAAAGTAAGTCAGCGATGAATCAGCAACGCGGGTTTACCCTGCTGGAGATGATGCTGGT < 1:2930396/66‑1 AAGAAGAAAAAGTAAGTCAGCGATGAATCAGCAACGCGGGTTTACCCTGCTGGAGATGATGCTGGT < 1:9724759/66‑1 AAGAAGAAAAAGTAAGTCAGCGATGAATCAGCAACGCGGGTTTACCCTGCTGGAGATGATGCTGGT < 1:11862038/66‑1 AGAAGAAAAAGTAAGTCAGCGATGAATCAGCAACGCGGGTTTACCCTGCTGGAGATGATGCTGGTGCT < 1:3953380/68‑1 AAGAAAAAGTAAGTCAGCGATGAATCAGCAACGCGGGTTTACCCTGCTGGAGATGATGCTGGTGCTG > 1:21232877/1‑67 AAGAAAAAGTAAGTCAGCGATGAATCAGCAACGCGGGTTTACCCTGCTGGAGATGATGATGGTGCTG > 1:29527354/1‑67 AGATAAAGTAAGTCAGCGATGAATCAGCAACGCGGGTTTACCCTGCTGGAGATGATGCTGGTGCTGG < 1:20214961/67‑1 AGAAAAAGTAAGTCAGCGATGAATCAGCAACGCGGGTTTACCCTGCTGGAGATGATGCTGGTGCTGGC > 1:25558702/1‑68 AGAAAAAGTAAGTCAGCGATGAATCAGCAACGCGGGTTTACCCTGCTGGAGATGATGCTGGTGCTGGC < 1:29880866/68‑1 AGAAAAAGTAAGTCAGCGATGAATCAGCAACGCGGGTTTACCCTGCTGGAGATGATGCTGGTGCTGGC < 1:35267245/68‑1 AGAAAAAGTAAGTCAGCGATGAATCAGCAACGCGGGTTTACCCTGCTGGAGATGATGCTGGTGCTGG < 1:26001112/67‑1 AGAAAAAGTAAGTCAGCGATGAATCAGCAACGCGGGTTTACCCTGCTGGAGATGATGCTGGTGCTGG < 1:2142230/67‑1 AAAAAGTAAGTCAGCGATGAATCAGCAACGCGGGTTTACCCTGCTGGAGATGATGCTGGTGCTGGC > 1:26919881/1‑66 CAGCGATGAATCAGCAACGCGGGTTTACCCTGCTGGAGATGATGCTGGTGCTGGCGACATCCTCCCGG < 1:16049320/68‑1 AGCAACGCGGGTTTACCCTGCTGGAGATGATGCTGGTGCTGGCGGCATCCTCCCGGGCATATGTGAAG > 1:14248104/1‑68 ACGCGGGTTTACCCTGCTGGAGATGATGCTGGTGCTGGCGACATCCTCCCGGCCATATGTGAAGAGCA < 1:5992996/68‑1 CCCTGCTGGAGATGATGCTGGTGCTGGCGACATCCTCCCGGCCATATGTGAAGAGCACCACGCTTGCC > 1:12213898/1‑68 CCTGCTGGAGATGATGCTGGTGCTGGCGACATCCTCCCGGCCATATGTGAAGAGCACCACGCTTGCCG > 1:6793479/1‑68 TGGAGATGATGCTGGTGCTGGCGACATCCTCCCGGCCATATGTGAAGAGCACCACGCTTGCCGTGATA > 1:24987485/1‑68 TGGAGATGATGCTGGTGCTGGCGACATCCTCCCGGCCATATGTGAAGAGCACCACGCTTGCCGTGATA > 1:14278516/1‑68 TGGAGATGATGCTGGTGCTGGCGACATCCTCCCGGCCATATGTGAAGAGCACCACGCTTGCCGTGAT < 1:28343819/67‑1 TGGAGATGATGCTGGTGCTGGCGACATCCTCCCGGCCATATGTGAAGAGCACCACGCTTGCCGTGAT < 1:6372574/67‑1 AGATGATGCTGGTGCTGGCGACATCCTCCCGGCCATATGTGAAGAGCACCACGCTTGCCGTGATAGCG > 1:11052366/1‑68 ATGATGCTGGTGCTGGCGACATCCTCCCGGCCATATGTGAAGAGCACCACGCTTGCCGTGATAGCGA > 1:20289734/1‑67 ATGATGCTGGTGCTGGCGACATCCTCCCGGCCATATGTGAAGAGCACCACGCTTGCCGTGATAGCGA > 1:3759928/1‑67 ATGATGCTGGTGCTGGCGACATCCTCCCGGCCATATGTGAAGAGCACCACGCTTGCCGTGATAGCGA > 1:27296949/1‑67 ATGATGCTGGTGCTGGCGACATCCTCCCGGCCATATGTGAAGAGCACCACGCTTGCCGTGATAGCGA > 1:16123167/1‑67 GCTGGTGCTGGCGACATCCTCCCGGCCATATGTGAAGAGCACCACGCTTGCCGTGATAGCGCCCAGC > 1:25719463/1‑67 GCTGGTGCTGGCGACATCCTCCCGGCCATATGTGAAGAGCACCACGCTTGCCGTGATAGCGACCAGC > 1:10061926/1‑67 GGTGCTGGCGACATCCTCCCGGCCATATGTGAAGAGCACCACGCTTGCCGTGATAGCGACCAGCGCCA > 1:3465777/1‑68 GTGCTGGCGACATCCTCCCGGCCATATGTGAAGAGCACCACGCTTGCCGTGATAGCGACCAGCGCCA < 1:8125222/67‑1 GTGCTGGCGACATCCTCCCGGCCATATGTGAAGAGCACCACGCTTGCCGTGATAGCGACCAGCGCCA < 1:13509250/67‑1 GTGCTGGCGACATCCTCCCGGCCATATGTGAAGAGCACCACGCTTGCCGTGATAGCGACCAGCGCCA < 1:24849621/67‑1 TGCTGGCGACATCCTCCCGGCCATATGTGAAGAGCACCACGCTTGCCGTGATAGCGACCAGCGCCAGC > 1:11347659/1‑68 GCTGGCGACATCCTCCCGGCCATATGTGAAGAGCCCCACGCTTGCCGTGATAGCGACCAGCGCCAGC > 1:28783704/1‑67 GCTGGCGACATCCTCCCGGCCATATGTGAAGAGCACCACGCTTGCCGTGATAGCGACCAGCGCCAGCA < 1:26400067/68‑1 GCTGGCGACATCCTCCCGGCCATATGTGAAGAGCACCACGCTTGCCGTGATAGCGACCAGCGCCAGCA < 1:15155139/68‑1 GCTGGCGACATCCTCCCGGCCATATGTGAAGAGCACCACGCTTGCCGTGATAGCGACCAGCGCCAGCA < 1:9109845/68‑1 GCTGGCGACATCCTCCCGGCCATATGTGAAGAGCACCACGCTTGCCGTGATAGCGACCAGCGCCAGCA < 1:601125/68‑1 GCTGGCGACATCCTCCCGGCCATATGTGAAGAGCACCACGCTTGCCGTGATAGCGACCAGCGCCAGCA < 1:32820896/68‑1 GCTGGCGACATCCTCCCGGCCATATGTGAAGAGCACCACGCTTGCCGTGATAGCGACCAGCGCCAGCA < 1:23297025/68‑1 GCTGGCGACATCCTCCCGGCCATATGTGAAGAGCACCACGCTTGCCGTGATAGCGACCAGCGCCAGCA < 1:122194/68‑1 GCTGGCGACATCCTCCCGGCCATATGTGAAGAGCACCACGCTTGCCGTGATAGCGACCAGCGCCAGCA < 1:25400557/68‑1 GCTGGCGACATCCTCCCGGCCATATGTGAAGAGCACCACGCTTGCCGTGATAGCGACCAGCGCCAGC > 1:11610992/1‑67 GCTGGCGACATCCTCCCGGCCATATGTGAAGAGCACCACGCTTGCCGTGATAGCGACCAGCGCCAGC > 1:8908063/1‑67 GCTGGCGACATCCTCCCGGCCATATGTGAAGAGCACCACGCTTGCCGTGATAGCGACCAGCGCCAGC > 1:29989139/1‑67 GCTGGCGACATCCTCCCGGCCATATGTGAAGAGCACCACGCTTGCCGTGATAGCGACCAGCGCCAGC > 1:735250/1‑67 GCTGGCGACATCCTCCCGGCCATATGTGAAGAGCACCACGCTTGCCGTGATAGCGACCAGCGCCAGC > 1:1017075/1‑67 GCTGGCGACATCCTCCCGGCCATATGTGAAGAGCACCACGCTTGCCGTGATAGCGACCAGCGCCAGC < 1:18190783/67‑1 GCTGGCGACATCCTCCCGGCCATATGTGAAGAGCACCACGCTTGCCGTGATAGCGACCAGCGCCAGC > 1:5110918/1‑67 GCTGGCGACATCCTCCCGGCCATATGTGAAGAGCACCACGCTTGCCGTGATAGCGACCAGCGCCAGC < 1:20435169/67‑1 GCTGGCGACATCCTCCCGGCCATATGTGAAGAGCACCACGCTTGCCGTGATAGCGACCAGCGCCAGC < 1:13579052/67‑1 GCTGGCGACATCCTCCCGGCCATATGTGAAGAGCACCACGCTTGCCGTGATAGCGACCAGCGCCAGC > 1:36715320/1‑67 GCTGGCGACATCCTCCCGGCCATATGTGAACAGCACCACGCTTGCCGTGATAGCGACCAGCGCCAGC < 1:34731114/67‑1 cgGGCGACATCCTCCCGGCCATATGTGAAGAGCACCACGCTTGCCGTGATAGCGACCAGCGCCAGCA < 1:7981164/65‑1 TGGCGACATCCTCCCGTCCATATGTGAAGAGCACCACGCTTGCCGTGATAGCGACCAGCGCCAGCACC < 1:74169/68‑1 TGGCGACATCCTCCCGGCCATATGTGAAGAGCACCACGCTTGCCGTGATAGCGACCAGCGCCAGCACC > 1:386390/1‑68 TGGCGACATCCTCCCGGCCATATGTGAAGAGCACCACGCTTGCCGTGATAGCGACCAGCGCCAGCACC > 1:36523484/1‑68 TGGCGACATCCTCCCGGCCATATGTGAAGAGCACCACGCTTGCCGTGATAGCGACCAGCGCCAGCACC > 1:27044783/1‑68 TGGCGACATCCTCCCGGCCATATGTGAAGAGCACCACGCTTGCCGTGATAGCGACCAGCGCCAGCAC < 1:9280345/67‑1 TGGCGACATCCTCCCGGCCATATGTGAAGAGCACCACGCTTGCCGTGATAGCGACCAGCGCCAGCAC < 1:32596997/67‑1 GGCGACATCCTCCCGGCCATATGTGAAGAGCACCACGCTTGCCGTGATAGCGACCAGCGCCAGCACCA > 1:36155139/1‑68 GGCGACATCCTCCCGGCCATATGTGAAGAGCACCACGCTTGCCGTGATAGCGACCAGCGCCAGCACCA < 1:36902957/68‑1 GGCGACATCCTCCCGGCCATATGTGAAGAGCACCACGCTTGCCGTGATAGCGACCAGCGCCAGCACCA > 1:11346782/1‑68 GCGACATCCTCCCGGCCATATGTGAAGAGCACCACGCTTGCCGTGATAGCGACCAGCGCCAGCACCA > 1:26498921/1‑67 GCGACATCCTCCCGGCCATATGTGAAGAGCACCACGCTTGCCGTGATAGCGACCAGCGCCAGCACCA > 1:27651905/1‑67 CGACATCCTCCCGGCCATATGTGAAGAGCACCACGCTTGCCGTGATAGCGACCAGCGCCAGCACCAGC > 1:9233603/1‑68 CGACATCCTCCCGGCCATATGTGAAGAGCACCACGCTTGCCGTGATAGCGACCAGCGCCAGCACCAGC > 1:1342563/1‑68 CGACATCCTCCCGGCCATATGTGAAGAGCACCACGCTTGCCGTGATAGCGACCAGCGCCAGCACCAGC > 1:31139990/1‑68 CGACATCCTCCCGGCCATATGTGAAGAGCACCACGCTTGCCGTGATAGCGACCAGCGCCAGCACCAG < 1:26356946/67‑1 CGACATCCTCCCGGCCATATGTGAAGAGCACCACGCTTGCCGTGATAGCGACCAGCGCCAGCACCAG < 1:12107767/67‑1 CGACATCCTCCCGGCCATATGTGAAGAGCACCACGCTTGCCGTGATAGCGACCAGCGCCAGCACCAG < 1:6479863/67‑1 CGACATCCTCCCGGCCATATGTGAAGAGCACCACGCTTGCCGTGATAGCGACCAGCGCCAGCACCAG < 1:17700778/67‑1 CGACATCCTCCCGGCCATATGTGAAGAGCACCACGCTTGCCGTGATAGCGACCAGCGCCAGCACCAG < 1:19235050/67‑1 GACATCCTCCCGGCCATATGTGAAGAGCACCACGCTTGCCGTGATAGCGACCAGCGCCAGCACCAGCA > 1:16702389/1‑68 GACATCCTCCCGGCCATATGTGAAGAGCACCACGCTTGCCGTGATAGCGACCAGCGCCAGCACCAGCA > 1:32049250/1‑68 GACATCCTCCCGGCCATATGTGAAGAGCACCACGCTTGCCGTGATAGCGACCAGCGCCAGCACCAGCA > 1:10603920/1‑68 GACATCCTCCCGGCCATATGTGAAGAGCACCACGCTTGCCGTGATAGCGACCAGCGCCAGCACCAGCA > 1:5117990/1‑68 GACATCCTCCCGGCCATATGTGAAGAGCACCACGCTTGCCGTGATAGCGACCAGCGCCAGCACCAGCA < 1:2348742/68‑1 GACATCCTCCCGGCCATATGTGAAGAGCACCACGCTTGCCGTGATAGCGACCAGCGCCAGCACCAGC < 1:26122722/67‑1 GACATCCTCCCGGCCATATGTGAAGAGCACCACGCTTGCCGTGATAGCGACCAGCGCCAGCACCAGC < 1:9381977/67‑1 GACATCCTCCCGGCCATATGTGAAGAGCACCACGCTTGCCGTGATAGCGACCAGCGCCAGCACCAGC < 1:19892932/67‑1 AGCAAGAAGAAAAAGTAAGTCAGCGATGAATCAGCAACGCGGGTTTACCCTGCTGGAGATGATGCTGGTGCTGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/3454802‑3454877‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgctggcgACATCCTCCCGGCCATATGTGAAGAGCACCACGCTTGCCGTGATAGCGACCAGCGCCAGCACCAGCA < CP009273/3454930‑3454864 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |