| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 3454877 | 409 (0.920) | 20 (0.050) | 11/94 | NT | 5.4% | coding (51/510 nt) | gspH | putative general secretory pathway component, cryptic |
| ? | CP009273 | = 3454930 | 353 (0.950) | coding (104/510 nt) | gspH | putative general secretory pathway component, cryptic | |||||
Only 100 of 492 total aligned reads displayed.
TGCTGGTGCTGGCGCTGGTCGCTATCACGGCAAGCGTGGTGCTCTTCACATATGGCCGGGAGGATGTCGCCAGCACTCGTGCGCGCGAAACAGCGGCGCGGTTTACCGCTGCACTTGAATTAGCCATCGACC > CP009273/3454864‑3454995 | tgctggtgctggCGCTGGTCGCTATCACGGCAAGCGTGGTGCTCTTCACATATGGCCGGGAGGATGTc > 1:10603920‑M2/1‑67 (MQ=255)tgctggtgctggCGCTGGTCGCTATCACGGCAAGCGTGGTGCTCTTCACATATGGCCGGGAGGATGTc < 1:2348742‑M2/68‑2 (MQ=255)tgctggtgctggCGCTGGTCGCTATCACGGCAAGCGTGGTGCTCTTCACATATGGCCGGGAGGATGTc > 1:12108490‑M2/1‑67 (MQ=255) gctggtgctggCGCTGGTCGCTATCACGGCAAGCGTGGTGCTCTTCACATATGGCCGGGAGGATGTc < 1:26391554‑M2/67‑2 (MQ=255) ctggtgctggCGCTGGTCGCTATCACGGCAAGCGTGGTGCTCTTCACATATGGCCGGGAGGATGTcg < 1:19235050‑M2/67‑3 (MQ=255) ctggtgctggCGCTGGTCGCTATCACGGCAAGCGTGGTGCTCTTCACATATGGCCGGGAGGATGTcg < 1:6479863‑M2/67‑3 (MQ=255) tggtgctggCGCTGGTCGCTATCACGGCAAGCGTGGTGCTCTTCACATATGGCCGGGAGGATGTcgcc > 1:36155139‑M2/1‑64 (MQ=255) tggtgctggCGCTGGTCGCTATCACGGCAAGCGTGGTGCTCTTCACATATGGCCGGGAGGATGTcgcc > 1:11346782‑M2/1‑64 (MQ=255) tggtgctggCGCTGGTCGCTATCACGGCAAGCGTGGTGCTCTTCACATATGGCCGGGAGGATGTcgc > 1:30592612‑M2/1‑64 (MQ=255) ggtgctggCGCTGGTCGCTATCACGGCAAGCGTGGTGCTCTTCACATATGGCCGGGAGGATGTcgcca > 1:27044783‑M2/1‑63 (MQ=255) tgctggCGCTGGTCGCTATCACGGCAAGCGTGGTGCTCTTCACATATGGCCGGGAGGATGTcgccagc < 1:25400557‑M2/68‑8 (MQ=255) tgctggCGCTGGTCGCTATCACGGCAAGCGTGGTGCTCTTCACATATGGCCGGGAGGATGTcgccagc < 1:7981172‑M2/68‑8 (MQ=255) tgctggCGCTGGTCGCTATCACGGCAAGCGTGGTGCTCTTCACATATGGCCGGGAGGATGTcgccagc < 1:23297025‑M2/68‑8 (MQ=255) tgctggCGCTGGTCGCTATCACGGCAAGCGTGGTGCTCTTCACATATGGCCGGGAGGATGTcgccagc < 1:9109845‑M2/68‑8 (MQ=255) gctggCGCTGGTCGCTATCACGGCAAGCGTGGTGCTGTTCACATATGGCCGGGAGGATGTcgccagc < 1:34731114‑M2/67‑8 (MQ=255) gctggCGCTGGTCGCTATCACGGCAAGCGTGGTGCTCTTCACATATGGCCGGGAGGATGTcgccagc > 1:7409874‑M2/1‑60 (MQ=255) gctggCGCTGGTCGCTATCACGGCAAGCGTGGTGCTCTTCACATATGGCCGGGAGGATGTcgccagc > 1:6231688‑M2/1‑60 (MQ=255) gctggCGCTGGTCGCTATCACGGCAAGCGTGGTGCTCTTCACATATGGCCGGGAGGATGTcgccagc > 1:1017075‑M2/1‑60 (MQ=255) gctggCGCTGGTCGCTATCACGGCAAGCGTGGTGCTCTTCACATATGGCCGGGAGGATGTcgccagc > 1:29989139‑M2/1‑60 (MQ=255) cgcTGGTCGCTATCACGGCAAGCGTGGTGCTCTTCACATATGGCCGGGAGGATGTCGCCAGCACTCGt > 1:8737001/1‑68 (MQ=255) cgcTGGTCGCTATCACGGCAAGCGTGGTGCTCTTCACATATGGCCGGGAGGATGTCGCCAGCACTCGt > 1:8229996/1‑68 (MQ=255) cgcTGGTCGCTATCACGGCAAGCGTGGTGCTCTTCACATATGGCCGGGAGGATGTCGCCAGCACTCGt > 1:20803834/1‑68 (MQ=255) cgcTGGTCGCTATCACGGCAAGCGTGGTGCGCTTCACATATGGCCGGGAGGATGTCGCCAGCACTCGt > 1:5853059/1‑68 (MQ=255) gcTGGTCGCTATCACGGCAAGCGTGGTGCTCTTCACATATGGCCGGGAGGATGTCGCCAGCACTCGt > 1:15016091/1‑67 (MQ=255) gcTGGTCGCTATCACGGCAAGCGTGGTGCTCTTCACATATGGCCGGGAGGATGTCGCCAGCACTCGt > 1:133122/1‑67 (MQ=255) gcTGGTCGCTATCACGGCAAGCGTGGTGCTCTTCACATATGGCCGGGAGGATGTCGCCAGCACTCGt > 1:19656030/1‑67 (MQ=255) gcTGGGCGCTATCACGGCAAGCGTGGTGCTCTTCACATATGGCCGGGAGGATGTcgccagcaccagc > 1:25719463‑M2/1‑54 (MQ=255) tCGCTATCACGGCAAGCGTGGTGCTCTTCACATATGGCCGGGAGGATGTcgccagcaccagcatcat > 1:16123167‑M2/1‑49 (MQ=255) tCGCTATCACGGCAAGCGTGGTGCTCTTCACATATGGCCGGGAGGATGTcgccagcaccagcatcat > 1:27296949‑M2/1‑49 (MQ=255) tCGCTATCACGGCAAGCGTGGTGCTCTTCACATATGGCCGGGAGGATGTcgccagcaccagcatcat > 1:20289734‑M2/1‑49 (MQ=255) tATCACGGCAAGCGTGGTGCTCTTCACATATGGCCGGGAGGATGTcgccagcaccagcatcatctcca > 1:14278516‑M2/1‑45 (MQ=255) tATCACGGCAAGCGTGGTGCTCTTCACATATGGCCGGGAGGATGTCGCCAGCACTCGTGCGCGCGaa < 1:6778643/67‑1 (MQ=255) tATCACGGCAAGCGTGGTGCTCTTCACATATGGCCGGGAGGATGGCGCCAGCACTCGTGCGCGCGaa < 1:35122785/67‑1 (MQ=255) aTCACGGCAAGCGTGGTGCTCTTCACATATGGCCGGGAGGATGTCGCCAGCACTCGTGCGCGCGAAAc > 1:18809064/1‑68 (MQ=255) aTCACGGCAAGCGTGGTGCTCTTCACATATGGCCGGGAGGATGTCGCCAGCACTCGTGCGCGCGAAAc < 1:10001252/68‑1 (MQ=255) cGGCAAGCGTGGTGCTCTTCACATATGGCCGGGAGGATGTCGCCAGCACTCGTGCGCGCGAAACAgcg < 1:4194779/68‑1 (MQ=255) ggCAAGCGTGGTGCTCTTCACATATGGCCGGGAGGATGTCGCCAGCACTCGTGCGCGCGAAACAgcg > 1:32126919/1‑67 (MQ=255) ggCAAGCGTGGTGCTCTTCACATATGGCCGGGAGGATGTCGCCAGCACTCGTGCGCGCGAAACAgcg > 1:10996102/1‑67 (MQ=255) ggCAAGCGTGGTGCTCTTCACATATGGCCGGGAGGATGTCGCCAGCACTCGTCCGCGCGAAACAgcg > 1:29554236/1‑67 (MQ=255) cAAGCGTGGTGCTCTTCACATATGGCCGGGAGGATGTCGCCAGCACTCGTGCGCGCGAAACAgcggc > 1:7671943/1‑67 (MQ=255) aGCGTGGTGCTCTTCACATATGGCCGGGAGGATGTCGCCAGCACTCGTGCGCGCGAAACAGCGGcgcg < 1:35827039/68‑1 (MQ=255) aGCGTGGTGCTCTTCACATATGGCCGGGAGGATGTCGCCAGCACTCGTGCGCGCGAAACAGCGGcgcg < 1:23823443/68‑1 (MQ=255) aGCGTGGTGCTCTTCACATATGGCCGGGAGGATGTCGCCAGCACTCGTGCGCGCGAAACAGCGGcgcg > 1:28490038/1‑68 (MQ=255) cGTGGTGCTCTTCACATATGGCCGGGAGGATGTCGCCAGCACTCGTGCGCGCGAAACAGCGGCGCGGt > 1:32426389/1‑68 (MQ=255) cGTGGTGCTCTTCACATATGGCCGGGAGGATGTCGCCAGCACTCGTGCGCGCGAAACAGCGGCGCGGt > 1:13657257/1‑68 (MQ=255) cGTGGTGCTCTTCACATATGGCCGGGAGGATGTCGCCAGCACTCGTGCGCGCGAAACAGCGGCGCGGt > 1:16610817/1‑68 (MQ=255) gtggtgCTCTTCACATATGGCCGGGAGGATGTCGCCAGCACTCGTGCGCGCGAAACAGCGGCGCgg < 1:22482231/66‑1 (MQ=255) gtggtgCTCTTCACATATGGCCGGGAGGATGTCGCCAGCACTCGTGCGCGCGAAACAGCGGCGCGGt < 1:13100308/67‑1 (MQ=255) gtggtgCTCTTCACATATGGCCGGGAGGATGTCGCCAGCACTCGTGCGCGCGAAACAGCGGCGCGGt < 1:23056774/67‑1 (MQ=255) gtggtgCTCTTCACATATGGCCGGGAGGATGTCGCCAGCACTCGTGCGCGCGAAACAGCGGCGCGGt < 1:15356712/67‑1 (MQ=255) gtggtgCTCTTCACATATGGCCGGGAGGATGTCGCCAGCACTCGTGCGCGCGAAACAGCGGCGCGGt < 1:31691961/67‑1 (MQ=255) ggtgCTCTTCACATATGGCCGGGAGGATGTCGCCAGCACTCGTGCGCGCGAAACAGCGGCGCGGttt < 1:37126791/67‑1 (MQ=255) gCTCTTCACATATGGCCGGGAGGATGTCGCCAGCACTCGTGCGCGCGAAACAGCGGCGCGGTTTAcc > 1:24105050/1‑67 (MQ=255) gCTCTTCACATATGGCCGGGAGGATGTCGCCAGCACTCGTGCGCGCGAAACAGCGGCGCGGTTTAcc > 1:24510086/1‑67 (MQ=255) gCTCGTCACATATGGCCGGGAGGATGTCGCCAGCACTCGTGCGCGCGAACCAGCGGCGCGGTTTAcc > 1:12648274/1‑67 (MQ=255) gCTCGTCACATATGGCCGGGAGGATGTCGCCAGCACTCGTGCGCGCGAAACAGCGGCGCGGGTTAcc < 1:18370020/67‑1 (MQ=255) tctTCACATATGGCCGGGAGGATGTCGCCAGCACTCGTGCGCGCGAAACAGCGGCGCGGTTTACCGCt < 1:9577505/68‑1 (MQ=255) tctTCACATATGGCCGGGAGGATGTCGCCAGCACTCGTGCGCGCGAAACAGCGGCGCGGTTTACCGCt < 1:32958381/68‑1 (MQ=255) tctTCACATATGGCCGGGAGGATGTCGCCAGCACTCGTGCGCGCGAAACAGCGGCGCGGTTTACCGCt < 1:26451902/68‑1 (MQ=255) ttCACATATGGCCGGGAGGATGTCGCCAGCACTCGTGCGCGCGAAACAGCGGCGCGGTTTACCGCTGc < 1:173926/68‑1 (MQ=255) ttCACATATGGCCGGGAGGATGTCGCCAGCACTCGTGCGCGCGAAACAGCGGCGCGGTTTACCGCTGc < 1:11648377/68‑1 (MQ=255) ttCACATATGGCCGGGAGGATGTCGCCAGCACTCGTGCGCGCGAAACAGCGGCGCGGTTTACCGCTGc < 1:1590276/68‑1 (MQ=255) ttCACATATGGCCGGGAGGATGTCGCCAGCACTCGTGCGCGCGAAACAGCGGCGCGGTTTACCGCTGc < 1:14165891/68‑1 (MQ=255) ttCACATATGGCCGGGAGGATGTCGCCAGCACTCGTGCGCGCGAAACAGCGGCGCGGTTTACCGCTGc < 1:33942770/68‑1 (MQ=255) ttCACATATGGCCGGGAGGATGTCGCCAGCACTCGTGCGCGCGAAACAGCGGCGCGGTTTACCGCTGc < 1:31073514/68‑1 (MQ=255) ttCACATATGGCCGGGAGGATGTCGCCAGCACTCGTGCGCGCGAAACAGCGGCGCGGTTTACCGCTGc < 1:24849724/68‑1 (MQ=255) tCACATATGGCCGGGAGGATGTCGCCAGCACTCGTGCGCGCGAAACAGCGGCGCGGTTTACCGCTGCa < 1:11889231/68‑1 (MQ=255) tCACATATGGCCGGGAGGATGTCGCCAGCACTCGTGCGCGCGAAACAGCGGCGCGGTTTACCGCTGCa < 1:2587320/68‑1 (MQ=255) acaTATGGCCGGGAGGATGTCGCCAGCACTCGTGCGCGCGAAACAGCGGCGCGGTTTACCGCTGCACt > 1:36511932/1‑68 (MQ=255) acaTATGGACGGGAGGATGTCGCCAGCACTCGTGCGCGCGAAACAGCGGCGCGGTTTACCGCTGCACt > 1:34071674/1‑68 (MQ=255) tatGGCCGGGAGGATGTCGCCAGCACTCGTGCGCGCGAAACAGCGGCGCGGTTTACCGCTGCACTTGa > 1:21909463/1‑68 (MQ=255) tatGGCCGGGAGGATGTCGCCAGCACTCGTGCGCGCGAAACAGCGGCGCGGTTTACCGCTGCACTTGa > 1:28811167/1‑68 (MQ=255) tatGGCCGGGAGGATGTCGCCAGCACTCGTGCGCGCGAAACAGCGGCGCGGTTTACCGCTGCACTTGa > 1:30327662/1‑68 (MQ=255) tatGGCCGGGAGGATGTCGCCAGCACTCGTGCGCGCGAAACAGCGGCGCGGTTTACCGCTGCACTTGa > 1:4417131/1‑68 (MQ=255) tatGGCCGGGAGGATGTCGCCAGCACTCGTGCGCGCGAAACAGCGGCGCGGTTTACCGCTGCACTTGa > 1:13470558/1‑68 (MQ=255) tatGGCCGGGAGGATGTCGCCAGCACTCGTGCGCGCGAAACAGCGGCGCGGTTTACCGCTGCACTTGa < 1:1777433/68‑1 (MQ=255) tatGGCCGGGAGGATGTCGCCAGCACTCGTGCGCGCGAAACAGCGGCGCGGTTTACCGCTGCACTTGa > 1:22135097/1‑68 (MQ=255) tatGGCCGGGAGGATGTCGCCAGCACTCGTGCGCGCGAAACAGCGGCGCGGTTTACCGCTGCACTTGa < 1:31337727/68‑1 (MQ=255) tatGGCCGGGAGGATGTCGCCAGCACTCGTGCGCGCGAAACAGCGGCGCGGTTTACCGCTGCACTTGa < 1:9352122/68‑1 (MQ=255) tatGGCCGGGAGGATGTCGCCAGCACTCGTGCGCGCGAAACAGCGGCGCGGTTTACCGCTGCACTTGa < 1:32774889/68‑1 (MQ=255) tatGGCCGGGAGGATGTCGCCAGCACTCGTGCGCGCGAAACAGCGGCGCGGTTTACCGCTGCACTTGa > 1:27856774/1‑68 (MQ=255) tatGGCCGGGAGGATGTCGCCAGAACTCGTGCGCGCGAAACAGCGGCGCGGTTTACCGCTGCACTTGa > 1:29234607/1‑68 (MQ=255) tGGCCGGGAGGATGTCGCCAGCACTCGTGCGCGCGAAACAGCGGCGCGGTTTACCGCTGCACTTGAAt > 1:33430116/1‑68 (MQ=255) tGGCCGGGAGGATGTCGCCAGCACTCGTGCGCGCGAAACAGCGGCGCGGTTTACCGCTGCACTTGAAt < 1:21231169/68‑1 (MQ=255) gCCGGGAGGATGTCGCCAGCACTCGTGCGCGCGAAACAGCGGCGCGGTTTACCGCTGCACTTGAATTa > 1:14595055/1‑68 (MQ=255) gCCGGGAGGATGTCGCCAGCACTCGTGCGCGCGAAACAGCGGCGCGGTTTACCGCTGCACTTGAATTa > 1:3880981/1‑68 (MQ=255) ccGGGAGGATGTCGCCAGCACTCGTGCGCGCGAAACAGCGGCGCGGTTTACCGCTGCACTTGAATTa > 1:26109818/1‑67 (MQ=255) ccGGGAGGATGTCGCCAGCACTCGTGCGCGCGAAACAGCGGCGCGGTTTACCGCTGCACTTGAATTa > 1:20533196/1‑67 (MQ=255) ccGGGAGGATGTCGCCAGCACTCGTGCGCGCGAAACAGCGGCGCGGTTTACCGCTGCACTTGAATTa > 1:36671632/1‑67 (MQ=255) ccGGGAGGATGTCGCCAGCACTCGTGCGCGCGAAACAGCGGCGCGGTTTACCGCTGCACTTGAATTa > 1:27665806/1‑67 (MQ=255) cGGGAGGATGTCGCCAGCACTCGTGCGCGCGAAACAGCGGCGCGGTTTACCGCTGCACTTGAATTAGc < 1:5542281/68‑1 (MQ=255) cGGGAGGATGTCGCCAGCACTCGTGCGCGCGAAACAGCGGCGCGGTTTACCGCTGCACTTGAATTAGc < 1:71437/68‑1 (MQ=255) cGGGAGGATGTCGCCAGCACTCGTGCGCGCGAAACAGCGGCGCGGTTTACCGCTGCACTTGAATTAGc < 1:26753602/68‑1 (MQ=255) cGGGAGGATGTCGCCAGCACTCGTGCGCGCGAAACAGCGGCGCGGTTTACCGCTGCACTTGAATTAGc < 1:34312078/68‑1 (MQ=255) cGGGAGGATGTCGCCAGCACTCGTGCGCGCGAAACAGCGGCGCGGTTTACCGCTGCACTTGAATTAGc < 1:9262234/68‑1 (MQ=255) cGGGAGGATGTCGCCAGCACTCGTGCGCGCGAAACAGCGGCGCGGTTTACCGCTGCACTTGAATTAGc < 1:2805478/68‑1 (MQ=255) aggaTGTCGCCAGCACTCGTGCGCGCGAAACAGCGGCGCGGTTTACCGCTGCACTTGAATTAGCCATc > 1:19914328/1‑68 (MQ=255) ggaTGTCGCCAGCACTCGTGCGCGCGAAACAGCGGCGCGGTTTACCGCTGCACTTGAATTAGCCATCg > 1:36915125/1‑68 (MQ=255) ggaTGTCGCCAGCACTCGTGCGCGCGAAACAGCGGCGCGGTTTACCGCTGCACTTGAATTAGCCATCg > 1:1702494/1‑68 (MQ=255) gTCGCCAGCACTCGTGCGCGCGAAACAGCGGCGCGGTTTACCGCTGCACTTGAATTAGCCATCGAcc > 1:5050325/1‑67 (MQ=255) | TGCTGGTGCTGGCGCTGGTCGCTATCACGGCAAGCGTGGTGCTCTTCACATATGGCCGGGAGGATGTCGCCAGCACTCGTGCGCGCGAAACAGCGGCGCGGTTTACCGCTGCACTTGAATTAGCCATCGACC > CP009273/3454864‑3454995 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |