| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 3618995 | NA (NA) | 10 (0.030) | 7/92 | NT | NA | noncoding (47/82 nt) | RIP260 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP260 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | CP009273 | = 3619028 | NA (NA) | noncoding (80/82 nt) | RIP260 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP260 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
Only 100 of 654 total aligned reads displayed.
GGTTTTGGGGGTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTT > CP009273/3618930‑3619062 | ttttGGGGGTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCAccga > 1:5941301‑M1/1‑64 (MQ=255) ttttGGGGGTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCAcc < 1:28952462‑M1/66‑3 (MQ=255) tttGGGGGTCAGTTCATAAACGCCTTATCCGGCCTTATAACAACTATAATTCAATAATTTGCAccga < 1:18236620‑M1/67‑5 (MQ=255) tttGGGGGTCAGTTCATAAACGCCTTATCCGGCCTAAAAACTACTAAAATTCAATAAATTGCTccga < 1:13157673‑M1/67‑5 (MQ=255) tttGGGGGTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCAccgat < 1:34099795‑M1/68‑6 (MQ=255) tttGGGGGTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCAccga < 1:3854523‑M1/67‑5 (MQ=255) tttGGGGGTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCAccga < 1:15462673‑M1/67‑5 (MQ=255) tttGGGGGTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCAccga < 1:6725968‑M1/67‑5 (MQ=255) tttGGGGGTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCAccga < 1:725921‑M1/67‑5 (MQ=255) tttGGGGGTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCAccga < 1:11675069‑M1/67‑5 (MQ=255) ttGGGGGTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCAccgatg < 1:24840407‑M1/68‑7 (MQ=255) tGGGGGTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCAccgatgc < 1:11005074‑M1/68‑8 (MQ=255) tGGGGGTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCAccgatgc < 1:26220092‑M1/68‑8 (MQ=255) ggggTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCAccgatgcgt > 1:32571432‑M1/1‑59 (MQ=255) ggggTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCAccgatgcgt > 1:17766444‑M1/1‑59 (MQ=255) ggggTCAGTTCATAAACGCCTTATCCGCCCTAAAAACAACTAAAATGCAATAAATTGCAccgatgcgg > 1:1224659‑M1/1‑59 (MQ=255) tCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGCTGCGTAGt > 1:22659660/1‑67 (MQ=255) tCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGt < 1:6456721/67‑1 (MQ=255) tCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGt < 1:13061650/67‑1 (MQ=255) tCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGt < 1:12057454/67‑1 (MQ=255) tCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGt < 1:28476700/67‑1 (MQ=255) tCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGt < 1:36586303/67‑1 (MQ=255) tCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTCCACCGATGCGTAGt < 1:25987208/67‑1 (MQ=255) cAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTcc < 1:8436814/68‑1 (MQ=255) cAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTcc < 1:35292198/68‑1 (MQ=255) cAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTcc < 1:35700326/68‑1 (MQ=255) cAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTcc < 1:36367002/68‑1 (MQ=255) cAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTcc < 1:19482560/68‑1 (MQ=255) cAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTcc < 1:28202945/68‑1 (MQ=255) cAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTcc < 1:14849548/68‑1 (MQ=255) cAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTcc < 1:13573699/68‑1 (MQ=255) cAGTTCATAAACGACTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTcc < 1:18658966/68‑1 (MQ=255) tCATAAACGCCTTATGCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTccc < 1:33063027/65‑1 (MQ=255) tCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTccc < 1:21090818/65‑1 (MQ=255) tCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCt < 1:26908423/66‑1 (MQ=255) tCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCt < 1:892012/66‑1 (MQ=255) tCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCt < 1:21918943/66‑1 (MQ=255) tCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCt < 1:11365508/66‑1 (MQ=255) tCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCt < 1:17511602/66‑1 (MQ=255) tCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCt < 1:12803924/66‑1 (MQ=255) tCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCt < 1:4907381/66‑1 (MQ=255) tCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCt < 1:5473630/66‑1 (MQ=255) tCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCt < 1:1516211/66‑1 (MQ=255) tCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCt < 1:15840169/66‑1 (MQ=255) aTAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATaa < 1:25389918/68‑1 (MQ=255) tAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAg < 1:30461769/68‑1 (MQ=255) aaCGCCTTATCCGGCCTAAAACCAACTAAAATTCAATAAATTGCACCGATGCGTACTCCCTATAAGCt > 1:22428364/1‑68 (MQ=255) aaCGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTATTCCCTATaacca > 1:27866870/1‑65 (MQ=255) aaCGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCt > 1:30999906/1‑68 (MQ=255) aaCGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCt < 1:6229977/68‑1 (MQ=255) aaCGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCt > 1:7067853/1‑68 (MQ=255) aaCGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCt > 1:3334391/1‑68 (MQ=255) aaCGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCt > 1:34995460/1‑68 (MQ=255) aaCGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCt < 1:10272664/68‑1 (MQ=255) aaCGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCt < 1:19036502/68‑1 (MQ=255) aaCGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCt > 1:20880528/1‑68 (MQ=255) aaCGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCt > 1:21638163/1‑68 (MQ=255) gCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCAccgatgcgtaagcttatagggactac > 1:33905458‑M1/1‑42 (MQ=255) gCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTAC < 1:6881045‑M2/68‑1 (MQ=255) gCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTAC < 1:3606311‑M2/68‑1 (MQ=255) cTTGTCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACG > 1:9649442‑M2/1‑67 (MQ=255) tCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCG < 1:14336811‑M2/68‑1 (MQ=255) tCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCG < 1:32845042‑M2/68‑1 (MQ=255) tCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCG < 1:33657883‑M2/68‑1 (MQ=255) tCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCG < 1:29217624‑M2/68‑1 (MQ=255) tCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCG < 1:30044272‑M2/68‑1 (MQ=255) ccGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGG > 1:14051514‑M2/1‑68 (MQ=255) ccGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGG < 1:27145572‑M2/68‑1 (MQ=255) ccGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGG < 1:16810979‑M2/68‑1 (MQ=255) ccGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGG > 1:16969654‑M2/1‑68 (MQ=255) ccGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGG > 1:9287563‑M2/1‑68 (MQ=255) ccGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGG < 1:17337581‑M2/68‑1 (MQ=255) ccGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGG < 1:4340842‑M2/68‑1 (MQ=255) ccGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGG > 1:10085149‑M2/1‑68 (MQ=255) ccTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCa < 1:16356159/67‑1 (MQ=255) cTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAAt < 1:12560020/68‑1 (MQ=255) cTAAAAACAACTAAAATTCAAAAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAAt < 1:14575996/68‑1 (MQ=255) aaaaCAACTAAAATTCAATAAATTGCCCCGATGCGTAGCCCCTATAAGCTTACGCATCGGGCAATTGt < 1:3719386/68‑1 (MQ=255) aaaCAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTa < 1:36807633/68‑1 (MQ=255) aaaCAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTa < 1:24073866/68‑1 (MQ=255) aacaacTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTAt < 1:23301149/68‑1 (MQ=255) aacaacTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTAt > 1:26491277/1‑68 (MQ=255) aacaacTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTAt > 1:3199768/1‑68 (MQ=255) acaacTAAAATTCAATAAATTCCACCGAGGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTAtt < 1:31321604/68‑1 (MQ=255) aaaaTTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTCCGCATCGGGCAATTGTATTTACGcc < 1:33502565/68‑1 (MQ=255) aaaaTTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGcc < 1:34659757/68‑1 (MQ=255) ttCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTg > 1:29674838/1‑68 (MQ=255) tCAATAAATTGCACCTATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGt < 1:20481343/68‑1 (MQ=255) tCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGt < 1:24519152/68‑1 (MQ=255) cAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTc < 1:25631034/68‑1 (MQ=255) aaaTTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCaa > 1:19811836/1‑68 (MQ=255) aCCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTAtt > 1:23662482/1‑45 (MQ=255) aCCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCtt < 1:7989043/68‑1 (MQ=255) aCCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCtt < 1:22969489/68‑1 (MQ=255) aCCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCtt < 1:30672056/68‑1 (MQ=255) aCCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCt > 1:27491230/1‑67 (MQ=255) aCCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCt > 1:1052952/1‑67 (MQ=255) aCCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCt > 1:5289300/1‑67 (MQ=255) aCCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCt > 1:25109481/1‑67 (MQ=255) aCCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGGCt > 1:7463678/1‑67 (MQ=255) | GGTTTTGGGGGTCAGTTCATAAACGCCTTATCCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTT > CP009273/3618930‑3619062 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |