| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 3618995 | NA (NA) | 10 (0.030) | 7/92 | NT | NA | noncoding (47/82 nt) | RIP260 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP260 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | CP009273 | = 3619028 | NA (NA) | noncoding (80/82 nt) | RIP260 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP260 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
Only 100 of 683 total aligned reads displayed.
CCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTGAAAAATGC > CP009273/3618961‑3619095 | ccGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGG > 1:15071643‑M2/1‑68 (MQ=255)ccGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGG > 1:1389290‑M2/1‑68 (MQ=255)ccGGCCTAAAAACAACTAAAATTCAATAA‑TTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGG < 1:29608405‑M2/67‑1 (MQ=255) gCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCa > 1:22898841/1‑68 (MQ=255) ccTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCa < 1:25906756/67‑1 (MQ=255) cTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAAt < 1:14364249/68‑1 (MQ=255) cTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAAt < 1:29274884/68‑1 (MQ=255) cTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAAt < 1:12560020/68‑1 (MQ=255) aaaaCAACTAAAGTTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGt < 1:12862331/68‑1 (MQ=255) aaaCAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTa < 1:24073866/68‑1 (MQ=255) aaaCAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTa > 1:10998975/1‑68 (MQ=255) aaaCAACAAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTa < 1:35714216/68‑1 (MQ=255) aacaacTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTAt > 1:16570014/1‑68 (MQ=255) aacaacTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTAt < 1:9298696/68‑1 (MQ=255) aacaacTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTAt > 1:23129252/1‑68 (MQ=255) aaaaTTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGcc < 1:26785767/68‑1 (MQ=255) aaTTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCAt > 1:30244350/1‑68 (MQ=255) ttCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTg < 1:21484234/68‑1 (MQ=255) tCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTCCGCCATTGt < 1:34904394/68‑1 (MQ=255) cAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTc < 1:5673153/68‑1 (MQ=255) aTAAATAGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGtgcaatttattgaattttagttgtt > 1:14623895‑M2/1‑43 (MQ=255) tGCACCGATGCGTAGTCCCTATAAGCTTCCGAATCGGGCAATTGTATTTACGCCATTGTCCCAATCGt < 1:25662983/68‑1 (MQ=255) tGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGt < 1:33518587/68‑1 (MQ=255) tGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGt < 1:11298891/68‑1 (MQ=255) aCCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCtt < 1:7989043/68‑1 (MQ=255) aCCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCt > 1:27858631/1‑67 (MQ=255) aCCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCt > 1:33775948/1‑67 (MQ=255) aCCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCt > 1:25189266/1‑67 (MQ=255) aCCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCt > 1:28270117/1‑67 (MQ=255) aCCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCt > 1:27308487/1‑67 (MQ=255) aCCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCt > 1:35213482/1‑67 (MQ=255) aCCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCt > 1:13427113/1‑67 (MQ=255) aCCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCt > 1:10347430/1‑67 (MQ=255) aCCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCt > 1:16861325/1‑67 (MQ=255) aCCCATGCCTAGTCCCTATAAGCTTACGCATCGGtgcaatttattgaattttagttgtttttaggccg > 1:26267842‑M2/1‑34 (MQ=255) tGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGa > 1:36101127/1‑68 (MQ=255) gCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGaa < 1:27486670/68‑1 (MQ=255) gTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATc > 1:34341576/1‑68 (MQ=255) gTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATc > 1:24285558/1‑68 (MQ=255) aGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCgc > 1:20541129/1‑68 (MQ=255) aGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCgc > 1:28722394/1‑68 (MQ=255) aGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCgc > 1:22506886/1‑68 (MQ=255) aGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCgc > 1:18635514/1‑68 (MQ=255) cccTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCgcagc > 1:14203229/1‑68 (MQ=255) cccTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCgcagc > 1:32132459/1‑68 (MQ=255) cccTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCgcag > 1:10584554/1‑67 (MQ=255) tataAGCTTACGCATCGGGCTATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCagcagc < 1:7030055/68‑1 (MQ=255) tataAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCagcagc < 1:23756616/68‑1 (MQ=255) taAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAgcgc > 1:6565359/1‑68 (MQ=255) taAGCTTACGCATCGGGCAAATGTATTTACGCCATTGTCCCAATCGTCTTCCTGCATCGCAGCAgcgc > 1:8802062/1‑68 (MQ=255) aGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCaa > 1:26510563/1‑68 (MQ=255) aGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCaa > 1:7360794/1‑68 (MQ=255) aGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCaa > 1:6275639/1‑68 (MQ=255) aGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCaa > 1:30603025/1‑68 (MQ=255) aGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCaa > 1:3867531/1‑68 (MQ=255) aGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCaa > 1:33089039/1‑68 (MQ=255) aGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCaa > 1:19560005/1‑68 (MQ=255) aGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCCTCATCCTGAATCGCAGCAGCGCaa > 1:17343965/1‑68 (MQ=255) aGCTTACGCATCGGGCAATTGTATTTACGCCATAGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCaa > 1:15663837/1‑68 (MQ=255) gCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAAt > 1:31068043/1‑68 (MQ=255) cTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCCGCGCAATg > 1:10012221/1‑68 (MQ=255) cTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATg > 1:24587639/1‑68 (MQ=255) cTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATg > 1:6026064/1‑68 (MQ=255) cTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATg > 1:17079971/1‑68 (MQ=255) cTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATg > 1:7717911/1‑68 (MQ=255) cTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATg > 1:4874300/1‑68 (MQ=255) cTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATg > 1:4408882/1‑68 (MQ=255) cTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATg > 1:11931149/1‑68 (MQ=255) cTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATg > 1:32230150/1‑68 (MQ=255) cTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATg > 1:32840608/1‑68 (MQ=255) cTTACGCATCGGGCAATTGAATTTACGCCATAGTCCCAAACGACATCCTGAATCCCAGCAGCGCAATg > 1:18025226/1‑68 (MQ=255) ttACGCATCGGGCATTTGTATTTACTCCATTGTCGCAATCGTCTTCCTGAATCGCAGCAGCGCAAt < 1:18316916/66‑1 (MQ=255) ttACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAAt < 1:32619631/66‑1 (MQ=255) ttACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATgg < 1:19123738/68‑1 (MQ=255) ttACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATgg < 1:3732647/68‑1 (MQ=255) tACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGt < 1:27040012/68‑1 (MQ=255) ccgCATCGGtgcaatttattgcattttagttgtttttagggcggataaggcgtttatgaactgacccc > 1:1224659‑M2/2‑9 (MQ=255) aCGCATCGGtgcaatttattgaattttagttgtttttaggccggataaggcgtttatgaactgacccc > 1:17766444‑M2/1‑9 (MQ=255) cGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTGa < 1:2001953/68‑1 (MQ=255) gCATCGGtgcaatttattgaattttagttgtttttaggccggataaggcgtttatgaactgaccccca < 1:5075715‑M2/68‑62 (MQ=255) gCATCGGtgcaatttattgaattttagttgtttttaggccggataaggcgtttatgaactgaccccca < 1:9024264‑M2/68‑62 (MQ=255) gCATCGGtgcaatttattgaattttagttgtttttaggccggataaggcgtttatgaactgaccccca < 1:25527117‑M2/68‑62 (MQ=255) gCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTGaa > 1:3676152/1‑68 (MQ=255) gCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTGaa > 1:16237447/1‑68 (MQ=255) gCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTGaa > 1:21269539/1‑68 (MQ=255) cATCGGtgcaatttattgaattttagttgtttttaggccggataaggcgtttatgaactgacccccaa < 1:23414371‑M2/68‑63 (MQ=255) cATCGGtgcaatttattgaattttagttgtttttaggccggataaggcgtttatgaactgacccccaa < 1:24840407‑M2/68‑63 (MQ=255) cATCGGtgcaatttattgaattttagttctttttaggccggataaggcgattaagaactcacccccaa < 1:33384321‑M2/68‑63 (MQ=255) cATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTGaaa > 1:15385214/1‑68 (MQ=255) cATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTGaaa > 1:34712405/1‑68 (MQ=255) aTCGGtgcaatttattgaattttagttgtttttaggccggataaggcgtttatgaactgacccccaaa < 1:34099795‑M2/68‑64 (MQ=255) aTCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTGaaa < 1:9597155/67‑1 (MQ=255) tCGGtgcaatttattgaattttagttgtttttaggccggataaggcgtttatgaactgacccccaaaa > 1:35849145‑M2/1‑4 (MQ=255) tCGGtgcaatttattgaattttagttgtttttaggccggataaggcgtttatgaactgacccccaaaa > 1:22090376‑M2/1‑4 (MQ=255) tCGGtgcaatttattgaattttagttgtttttaggccggataaggcgtttatgaactgacccccaaaa > 1:31680405‑M2/1‑4 (MQ=255) tCGGtgcaatttattgaattttagttgtttttaggccggataaggcgtttatgaactgacccccaaa < 1:5424177‑M2/67‑64 (MQ=255) tCGGtgcaatttattgaattttagttgtttttaggccggataaggcgtttatgaactgacccccaaa < 1:8375752‑M2/67‑64 (MQ=255) tCGGtgcaatttattgaattttagttgtttttaggccggataaggcgtttatgaactgacccccaaa < 1:21045246‑M2/67‑64 (MQ=255) tCGGtgcaatttattgaattttagttgtttttaggccggataaggcgtttatgaactgacccccaaa < 1:11616719‑M2/67‑64 (MQ=255) tCGGagcaatttattgaattttagtagtttttaggccggataaggcgtttatgaactgacccccaaa < 1:13157673‑M2/67‑64 (MQ=255) | CCGGCCTAAAAACAACTAAAATTCAATAAATTGCACCGATGCGTAGTCCCTATAAGCTTACGCATCGGGCAATTGTATTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTGAAAAATGC > CP009273/3618961‑3619095 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |