| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 3652912 = | 516 (1.160) | 26 (0.070) | 9/98 | NT | 6.2% | coding (321/1158 nt) | mdtE | anaerobic multidrug efflux transporter, ArcA‑regulated |
| ? | CP009273 | 3652940 = | 335 (0.860) | coding (349/1158 nt) | mdtE | anaerobic multidrug efflux transporter, ArcA‑regulated | |||||
Only 100 of 663 total aligned reads displayed.
GGCGATTCGCTGTATCAGATTGATCCTGCACCTTTACAGGCCGAGCTAAACTCCGCCAAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCGCATCACCTTTAACCGCCAGGCATCGTTGCTGA > CP009273/3652847‑3652979 | tcctgacggctaacgtagctggtcttcagcaacgatgcctggcgggttaaggtgatgcgggccttggt < 1:19224504‑M1/3‑3 (MQ=255) gCGATTCGCTGTATCAGATTGATCCTGCACCTTTACAGGCCGAGCTAAACTCCGCCAAAGGCTCGCTg > 1:16522608/1‑68 (MQ=255) gCGATTCGCTGTATCAGATTGATCCTGCACCTTTACAGGCCGAGCTAAACTCCGCCAAAGGCTCGCTg > 1:14072855/1‑68 (MQ=255) gCGATTCGCTGTATCAGATTGATCCTGCACCTTTACAGGCCGAGCTAAACTCCGCCAAAGGCTCGCTg > 1:9345202/1‑68 (MQ=255) cctgactgataacctagttggtattcagcaacgatgcctggcggttaaaggtgatgcgtgcattGCTg > 1:10861794‑M1/65‑68 (MQ=255) cctgacggctaacgtagttggtcttcagcaacgatgcctggcggttaaaggtgatgcgggctttGCTg < 1:19494126‑M1/4‑1 (MQ=255) cctgacggctaacgtagttggtcttcagcaacgatgcctggcggttaaaggtgatgcgggcattGCTg > 1:31534564‑M1/65‑68 (MQ=255) cctgacggctaacgtagttggtcttcagcaacgatgcctggcggttaaaggtgatgcgggcattGCTg > 1:18175597‑M1/65‑68 (MQ=255) cctgacggctaacgtagttggtcttcagcaacgatgcctggcggttaaaggtgatgcgggcattGCTg > 1:26033352‑M1/65‑68 (MQ=255) ctgacggctaacgtagttggtcttcagcaacgatgcctggcggttaaaggtgatgcgggcattGCTg < 1:29316549‑M1/4‑1 (MQ=255) ctgacggctaacgtagttggtcttcagcaacgatgcctggcggttaaaggtgatgcgggcattGCTg < 1:16770251‑M1/4‑1 (MQ=255) tgacggctaacgtagttggtcttcagcaacgatgcctggcggttaaaggtgatgcgggcattGCTGGc > 1:20535632‑M1/63‑68 (MQ=255) tgacggctaacgtagttggtcttcagcaacgatgcctggcggttaaaggtgatgcgggcattGCTGGc > 1:1788069‑M1/63‑68 (MQ=255) tgacggctaacgtagttggtcttcagcaacgatgcctggcggttaaaggtgatgcgggcattGCTGGc > 1:22861097‑M1/63‑68 (MQ=255) tgacggctaacgtagttggtcttcagcaacgatgcctggcggttaaaggtgatgcgggcattGCTGGc > 1:35336710‑M1/63‑68 (MQ=255) gATTCGCTGTATCAGATTGATCCTGCACCTTTACAGGCCGAGCTAAACTCCGCCAAAGGCTCGCTgg < 1:18844792/67‑1 (MQ=255) tCGCTGTATCAGATTGATCCTGCACCTTTACAGGCCGAGCTAAACTCCGCCAAAGGCTCGCTGGCGaa > 1:30571215/1‑68 (MQ=255) tCGCTGTATCAGATTGATCCTGCACCTTTACAGGCCGAGCTAAACTCCGCCAAAGGCTCGCTGGCGaa > 1:4320852/1‑68 (MQ=255) tGTATCAGATTGATCCTGCACCTTTACAGGCCGAGCTAAACTCCGCCAAAGGCTCGCTGGCGAAAgc > 1:29969460/1‑67 (MQ=255) gTATCAGATTGATCCTGCACCTTTACAGGCCGAGCTAAACTCCGCCAAAGGCTCGCTGGCGAAAgcgc < 1:16989201/68‑1 (MQ=255) gTATCAGATTGATCCTGCACCTTTACAGGCCGAGCTAAACTCCGCCAAAGGCTCGCTGGCGAAAgcgc < 1:28066288/68‑1 (MQ=255) tCAGATTGATCCTGCACCTTTACAGGCCGAGCTAAACTCCGCCAAAGGCTCGCTGGCGAAAGCGctct < 1:27150083/68‑1 (MQ=255) tCAGATTGATCCTGCACCTTTACAGGCCGAGCTAAACTCCGCCAAAGGCTCGCTGGCGAAAGCGctct < 1:30461143/68‑1 (MQ=255) tCAGATTGATCCTGCACCTTTACAGGCCGAGCTAAACTCCGCCAAAGGCTCGCTGGCGAAAGCGctct < 1:2770339/68‑1 (MQ=255) tCAGATTGATCCTGCACCTTTACAGGCCGAGCTAAACTCCGCCAAAGGCTCGCTGGCGAAAGCGctct < 1:5172755/68‑1 (MQ=255) tCAGATTGATCCTGCACCTTTACAGGCCGAGCTAAACTCCGCCAAAGGCTCGCTGGCGAAAGCGctct < 1:1199986/68‑1 (MQ=255) tCAGATTGATCCTGCACCTTTACAGGCCGAGCTAAACTCCGCCAAAGGCTCGCTGGCGAAAGCGctct < 1:29461151/68‑1 (MQ=255) tCAGATTGATCCTGCACCTTTACAGGCCGAGCTAAACTCCGCCAAAGGCTCGCTGGCGAAAGCGctc > 1:33787722/1‑67 (MQ=255) tCAGATTGATCCTGCACCTTTACAGGCCGAGCTAAACTCCGCCAAAGGCTCGCTGGCGAAAGCGctc > 1:10019652/1‑67 (MQ=255) cAGATTGATCGTGCAACTTTACAGGCCGAGCTAAACTCCGCCAAAGGCTCGCTGGCGAAAGCGctctc < 1:20654401/68‑1 (MQ=255) aGATTGATCCTGCACCTTTACAGGCCGAGCTAAACTCCGCCAAAGGCTCGCTGGCGAAAGCGctctct > 1:10579596/1‑68 (MQ=255) aTTGATCCTGCACCTTTACAGGCCGAGCTAAACTCCGCCAAAGGCTCGCTGGCGAAAGCGCTCTCTa > 1:28326305/1‑67 (MQ=255) aTTGATCCTGCACCTTTACAGGCCGAGCTAAACTCCGCCAAAGGCTCGCTGGCGAAAGCGCTCTCTa > 1:19890411/1‑67 (MQ=255) aTTGATCCTGCACCTTTACAGGCCGAGCTAAACTCCGCCAAAGGCTCGCTGGCGAAAGCGCTCTCTa > 1:22511177/1‑67 (MQ=255) aTTGATCCTGCACCTTTACAGGCCGAGCTAAACTCCGCCAAAGGCTCGCTGGCGAAAGCGCTCTCTa > 1:9787479/1‑67 (MQ=255) aTTGATCCTGCACCTTTACAGGCCGAGCTAAACTCCGCCAAAGGCTCGCTGGCGAAAGCGCTCTCTa > 1:29079887/1‑67 (MQ=255) aTTGATCCTGCACCTTTACAGGCCGAGCTAAACTCCGCCAAAGGCTCGCTGGCGAAAGCGCTCTCTa > 1:760301/1‑67 (MQ=255) aTTGATCCTGCACCTTTACAGGCCGAGCTAAACTCCGCCAAAGGCTCGCTGGCGAAAGCGCTCTCTa > 1:6708140/1‑67 (MQ=255) aTTGATCCTGCACCTTTACAGGCCGAGCTAAACTCCGCCAAAGGCTCGCTGGCGAAAGCGCTCTCTa > 1:32150967/1‑67 (MQ=255) aTTGATCCTGCACCTTTACAGGCCGAGCTAAACTCCGCCAAAGGCTCGCTGGCGAAAGCGCTCTCTa > 1:12595985/1‑67 (MQ=255) aTTGATCCTGCACCTTTACAGGCCGAGCTAAACTCCGCCAAAGGCTCGCTGGCGAAAGCGCTCTCTa > 1:3724398/1‑67 (MQ=255) aTTGATCCTGCACCTTTACAGGCCGAGCTAAACTCCGCCAAAGGCTCGCTGGCGAAAGCGCTCTCTa > 1:13445478/1‑67 (MQ=255) aTTGATCCTGCACCTTTACAGGCCGAGCTAAACTCCGCCAAAGGCTCGCTGGCGAAAGCGCTCTCTa > 1:33310427/1‑67 (MQ=255) ttGATCCTGCACCTTTACAGGCCGAGCTAAACTCCGCCACAGGCTCGCTGGCGAAAGCGCTCTCTAcc > 1:26685405/1‑68 (MQ=255) tGATCCTGCACCTTTACAGGCCGAGCTAAACTCCGCCAAAGGCTCGCTGGCGAAAGCGCTCTCTAcc > 1:31002072/1‑67 (MQ=255) tGATCCTGCACCTTTACAGGCCGAGCTAAACTCCGCCAAAGGCTCGCTGCCCAAAGCGCTCTATAca > 1:34411293/1‑66 (MQ=255) tGATCCTGCACCTTTACAGGCCGAGCTAAACTCCGCCAAAGGCACGCTGGCGAAAGCGCTCTCTAcc > 1:25417541/1‑67 (MQ=255) tGATCCTCCACCTTTACAGGCCGAGCTAAACTCCGCCAAAGGCGCGCTGGCGAAAGCGCTCTCTACCg < 1:11646478/68‑1 (MQ=255) tCCTGCACCTTTACAGGCCGAGCTAAACTCCGCCAAAGGCTCGCTGGCGAAAGCGCTCTCTACCg > 1:17167932/1‑65 (MQ=255) tCCTGCACCTTTACAGGCCGAGCTAAACTCCGCCAAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCa > 1:9496097/1‑68 (MQ=255) tCCTGCACCTTTACAGGCCGAGCTAAACTCCGCCAAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCa > 1:8256894/1‑68 (MQ=255) ccTGCACCTTTACAGGCCGAGCTAAACTCCGCCAAAGGCTCGCTGGCGAACGCGCTCTCTACCGCCa > 1:6486233/1‑67 (MQ=255) ccTGCACCTTTACAGGCCGAGCTAAACTCCGCCAAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAg < 1:10345703/68‑1 (MQ=255) cTGCACCTTTACAGGCCGAGCTAAACTCCGCCAAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGc < 1:15041032/68‑1 (MQ=255) aCCTTTACAGGCCGAGCTAAACTCCGCCAAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAAt > 1:24955203/1‑67 (MQ=255) aCCTTTACAGGCCGAGCTAAACTCCGCCAAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAAt > 1:21249896/1‑67 (MQ=255) aCCTTTACAGGCCGAGCTAAACTCCGCCAAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAAt > 1:34085317/1‑67 (MQ=255) aCCTTTACAGGCCGAGCTAAACTCCGCCAAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAAt > 1:11869037/1‑67 (MQ=255) aCCTTTACAGGCCGAGCTAAACTCCGCCAAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAAt > 1:1299788/1‑67 (MQ=255) ttACAGGCCGAGCTAAACTCCGCCAAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCg < 1:2881915/68‑1 (MQ=255) gatgcctggcggttaaaggtgatgcgggcattGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGccc < 1:25768200‑M1/35‑1 (MQ=255) tACAGGCCGAGCTAAACTCCGCCAAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCGc > 1:36319478/1‑68 (MQ=255) tACAGGCAGAGCTAAACTCCGCCAAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCGc > 1:3976461/1‑68 (MQ=255) aCAGGCCGAGCTAAACTCCGCCAAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCGCa < 1:8973742/68‑1 (MQ=255) aCAGGCCGAGCTAAACTCCGCCAAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCGCa > 1:4707336/1‑68 (MQ=255) aGGCCGAGCTAAACTCCGCCAAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCGCAt > 1:3165629/1‑67 (MQ=255) aGGCCGAGCTAAACTCCGCCAAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCGCATc > 1:35008889/1‑68 (MQ=255) aGGCCGAGCTAAACTCCGCCAAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCGCATc > 1:221837/1‑68 (MQ=255) gCCGAGCTAAACTCCGCCAAAGGCTCGCTGGCGCAAGCGCTCTCTACCGCCAGCAATGCCCGCATCa > 1:36873723/1‑67 (MQ=255) gCCGAGCTAAACTCCGCCAAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCGCATCa > 1:26307580/1‑67 (MQ=255) gCCGAGCTAAACTCCGCCAAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCGCATCa > 1:13206774/1‑67 (MQ=255) gCCGAGCTAAACTCCGCCAAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCGCATCa > 1:7154814/1‑67 (MQ=255) gCCGAGCTAAACTCCGCCAAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCGCATCa > 1:11297865/1‑67 (MQ=255) gCCGAGCTAAACTCCGCCAAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCGCATCa > 1:36448541/1‑67 (MQ=255) gCCGAGCTAAACTCCGCCAAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCGCATCa > 1:35761757/1‑67 (MQ=255) gCCGAGCTAAACTCCGCCAAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCGCATCa > 1:21538283/1‑67 (MQ=255) gCCGAGCTAAACTCCGCCAAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCGCATCa > 1:20145036/1‑67 (MQ=255) ccGAGCTAAACTCCGCCAAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCGCATCa > 1:12239937/1‑66 (MQ=255) ccGAGCTAAACTCCGCCAAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCGCATCAc < 1:24073639/67‑1 (MQ=255) ccGAGCTAAACTCCGCCAAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCGCATCAc < 1:14722478/67‑1 (MQ=255) ccGAGCTAAACTCCGCCAAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCGCATCAc < 1:32900700/67‑1 (MQ=255) ccGAGCTAAACTCCGCCAAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCGCATCAc < 1:27430048/67‑1 (MQ=255) gcggttaaaggtgatgcgggcattGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCGCATCCCCt < 1:15990311‑M1/44‑1 (MQ=255) cgcgCTAAACTCCGCCACAGGCTCGCTGGCGACAGCGCTCTCTACCGCCAGCAATGCCCGCATCAcc < 1:34694796/64‑1 (MQ=255) cGAGCTAAACTCCGCCAAAGGCTCGCTGGCGAAAGCGCTCTCTACCGTCAGCAATGCCCGCATCACCt > 1:5731476/1‑68 (MQ=255) cGAGCTAAACTCCGCCAAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCGCATCAcc < 1:23476441/67‑1 (MQ=255) cTAAACTCCGCCAAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCGCATCCCCTTTa > 1:4471227/1‑67 (MQ=255) aggtgatgcgggcattGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCGCATCACCTTTAACCg < 1:36117385‑M1/51‑1 (MQ=255) aCTCCGCCAAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCGCATCACCTTTAACCg > 1:23874349/1‑67 (MQ=255) aCTCCGCCAAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCGCATCACCTTTAACCg > 1:24615560/1‑67 (MQ=255) cTCCGCCAAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCGCATCACCTTTAACCGcc < 1:20964247/68‑1 (MQ=255) tCCGCCAAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCGCATCACCTTTAACCGCCa < 1:14385422/68‑1 (MQ=255) gtgatgcgggcattGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCGCATCACCTTTAACCGCCa < 1:17479969‑M1/54‑1 (MQ=255) cGCCAAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCGCATCACCTTTAACCGCCAgg < 1:32552651/68‑1 (MQ=255) cAAAGGCTCGCTGTCGAAAGAGCTCTCTACCGCCAGGAATGCCCGCATGACCTTTAACCGCCAGGCa < 1:1543998/67‑1 (MQ=255) cAAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCGCATCACCTTTAACCGCCAGGCa < 1:6134552/67‑1 (MQ=255) gCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCGCATCACCGTTAACCGCCAGGCATCGtt > 1:8624913/1‑67 (MQ=255) cTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCGCATCACCTTTAACCGCCAGGCATCGtt < 1:24388084/66‑1 (MQ=255) cTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCGCATCACCTTTAACCGCCAGGCATCGtt < 1:7898939/66‑1 (MQ=255) cTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCGCATCACCTTTAACCGCCAGGCATCGtt < 1:18645005/66‑1 (MQ=255) | GGCGATTCGCTGTATCAGATTGATCCTGCACCTTTACAGGCCGAGCTAAACTCCGCCAAAGGCTCGCTGGCGAAAGCGCTCTCTACCGCCAGCAATGCCCGCATCACCTTTAACCGCCAGGCATCGTTGCTGA > CP009273/3652847‑3652979 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |