| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 3808465 | NA (NA) | 7 (0.020) | 4/92 | NT | NA | noncoding (9/22 nt) | REP275 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP275 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | = 3808469 | NA (NA) | noncoding (13/22 nt) | REP275 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP275 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
Only 100 of 473 total aligned reads displayed.
ACGGATGATTTTGACGCCCGCTGGCCGCTAATTGCGGCACAGTTGCAGTAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCTTAACCGCCGCCAGATGT > CP009273/3808400‑3808532 | aCGGATGATTTTGACGCCCGCTGGCCGCTAATTGCGGCACAGTTGCAGTAATATGACGCCGGATGACt > 1:28580660/1‑68 (MQ=255)aCGGATGATTTTGACGCCCGCTGGCCGCTAATTGCGGCACAGTTGCAGTAATATGACGCCGGATGACt > 1:21821008/1‑68 (MQ=255) cGGATGATTTTGACGCCCGCTGGCCGCTAATTGCGGCACAGTTGCAGTAATATGACGCCGGATGACt < 1:26611419/67‑1 (MQ=255) cGGATGATTTTGACGCCCGCTGGCCGCTAATTGCGGCACAGTTGCAGTAATATGACGCCGGATGACt < 1:10830109/67‑1 (MQ=255) gatTTTGACGCCCGCTGGCCGCTAATTGCGGCACAGTTGCAGTAATATGACGCCGGATGACTTTtcat > 1:25199735‑M2/1‑64 (MQ=255) atTTTGACGCCCGCTGGCCGCTAATTGCGGCACAGTTGCAGTAATATGACGCCGGATGACTTTtcat < 1:27161086‑M2/67‑5 (MQ=255) ttttGACGCCCGCTGGCCGCTAATTGCGGCACAGTTGCAGTAATATGACGCCGGATGACTTTtcatc > 1:15638734‑M2/1‑62 (MQ=255) ttttGACGCCCGCTGGCCGCTAATTGCGGCACAGTTGCAGTAATATGACGCCGGATGACTTTtcatc > 1:30827912‑M2/1‑62 (MQ=255) tttGACGCCCGCTGGCCGCTAATTGCGGCACAGTTGCAGTAATATGACGCCGGATGACTTTtcatccg < 1:14559463‑M2/68‑8 (MQ=255) ttGACGGCCGCTGGCCGCTAATTGCGGCACAGTTGCAGTAATATGACGCCGGATGACTTTtcatccgg > 1:19242264‑M2/1‑60 (MQ=255) ttGACGCCCGCTGGCCGCTAATTGCGGCACAGTTGCAGTAATATGACGCCGGATGACTTTtcatccg < 1:27789714‑M2/67‑8 (MQ=255) aCGCCCGCTGGCCGCTAATTGCGGCACAGTTGCAGTAATATGACGCCGGATGACTTTTCATCCGGCGa > 1:2027854/1‑68 (MQ=255) cGCCCGCTGGCCGCTAATTGCTGCACAGTTGCAGTAATATGACGCCGGATGACTTTTCATCCGGCGa < 1:36631741/67‑1 (MQ=255) cGCCCGCTGGCCGCTAATTGCGGCACAGTTGCAGTAATATGACGCCGGATGACTTTTCATCCGGCGAg > 1:29489186/1‑68 (MQ=255) gCCCGCTGGCCGCTAATTGCGGCACAGTTGCAGTAATATGACGCCGGATGACTTTTCATCCGGCGAGt < 1:27484512/68‑1 (MQ=255) gCCCGCTGGCCGCTAATTGCGGCACAGTTGCAGTAATATGACGCCGGATGACTTTTCATCCGGCGAGt < 1:254891/68‑1 (MQ=255) gCCCGCTGGCCGCTAATTGCGGCACAGTTGCAGTAATATGACGCCGGATGACTTTTCATCCGGCGAGt > 1:30520664/1‑68 (MQ=255) gCCCGCTGGCCGCTAATTGCGGCACAGTTGCAGTAATATGACGCCGGATCACTTTTCATCCGGCGAGt < 1:20022938/68‑1 (MQ=255) ccGCTGGCCGCTAATTGCGGCACAGTTGCAGTAATATGACGCCGGATGACTTTtcatccggcgtcat > 1:525504‑M2/1‑53 (MQ=255) ccGCTGGCCGCTAATTGCGGCACAGTTGCAGTAATATGACGCCGGATGACTTTtcatccggcgtcat > 1:14891019‑M2/1‑53 (MQ=255) ccGCTGGCCGCTAATTGCGGCACAGTTGCAGTAATATGACGCCGGATGACTTTtcatccggcgtcat > 1:22325806‑M2/1‑53 (MQ=255) cGCTGGCCGCTAATTGCGGCACAGTTGCAGTAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTc < 1:14427686/68‑1 (MQ=255) cGCTAATTGCGGCACAGTTGCAGTAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAAc < 1:33410966/68‑1 (MQ=255) gCTAATTGCGGCACAGTTGCAGTAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACg < 1:33910236/68‑1 (MQ=255) tAATTGCGGCACAGTTGCAGTAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGc < 1:11359479/67‑1 (MQ=255) tAATTGCGGCACAGTTGCAGTAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGc < 1:31168450/67‑1 (MQ=255) tAATTGCGGCACAGTTGCAGTAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGc < 1:2155707/67‑1 (MQ=255) tAATTGCGGCACAGTTGCAGTAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGc < 1:12228520/67‑1 (MQ=255) aaTTGCGGCACAGTTGCAGTAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCa > 1:29263919/1‑68 (MQ=255) ttGCGGCACAGTTGCAGTAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCaa > 1:24028301/1‑67 (MQ=255) tGCGGCACAGTTGCAGTAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAAc < 1:17640200/68‑1 (MQ=255) tGCGGCACAGTTGCAGTAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAAc < 1:2281809/68‑1 (MQ=255) gCGGCACAGTTGCAGTAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAAct < 1:8682637/68‑1 (MQ=255) ggCACAGTTGCAGTAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAActct > 1:36491646/1‑68 (MQ=255) ggCACAGTTGCAGTAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAActct < 1:11976185/68‑1 (MQ=255) gCACAGTTGCAGTAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAActct > 1:1336490/1‑67 (MQ=255) acaGTTGCAGTAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTc > 1:34888929/1‑67 (MQ=255) acaGTTGCAGTAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTc > 1:35651002/1‑67 (MQ=255) acaGTTGCAGTAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTc > 1:36164369/1‑67 (MQ=255) acaGTTGCAGTAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTc > 1:14750466/1‑67 (MQ=255) gTTGCAGTAATATGACGCCGGATGAaaagtcatccggcgtcatattactgcaactgtgccgcaatta > 1:11788250‑M1/1‑25 (MQ=255) tGCAGTAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTcgcg < 1:24347113/65‑1 (MQ=255) tGCAGTAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTcgcg < 1:25761875/65‑1 (MQ=255) aGTAATATGACGCCGGTTGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAgg < 1:34069013/67‑1 (MQ=255) aGTAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAgg < 1:26895063/67‑1 (MQ=255) aGTAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAgg > 1:21677780/1‑67 (MQ=255) aGTAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAgg > 1:31548267/1‑67 (MQ=255) aGTAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAgg > 1:34406932/1‑67 (MQ=255) aGTAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAgg < 1:15874163/67‑1 (MQ=255) aGTAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAgg < 1:4333104/67‑1 (MQ=255) aGTAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAgg < 1:15043556/67‑1 (MQ=255) aGTAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAgg > 1:4577387/1‑67 (MQ=255) aGTAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAgg > 1:6425358/1‑67 (MQ=255) tAATATGACGCCGGATGAaaagtcatccggcgtcatattactgcaactgtgccgcaattagcggcca > 1:8228382‑M1/1‑18 (MQ=255) tAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCt > 1:7054485/1‑68 (MQ=255) tAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCt > 1:7495999/1‑68 (MQ=255) tAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCt > 1:10342373/1‑68 (MQ=255) aaTATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGc < 1:9355670/65‑1 (MQ=255) aaTATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGc < 1:32851403/65‑1 (MQ=255) aaTATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGc < 1:32651645/65‑1 (MQ=255) aaTATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGc < 1:3215494/65‑1 (MQ=255) aaTATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGc < 1:5641983/65‑1 (MQ=255) aaTATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGc < 1:23298660/65‑1 (MQ=255) aaTATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGc < 1:11456040/65‑1 (MQ=255) aaTATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCtt > 1:32710741/1‑68 (MQ=255) tatGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCTTa > 1:1259549/1‑67 (MQ=255) atGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCTTaa > 1:15198641/1‑67 (MQ=255) atGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCTTaa > 1:23723885/1‑67 (MQ=255) atGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCTTaa > 1:16130459/1‑67 (MQ=255) atGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCTTaa > 1:17069636/1‑67 (MQ=255) atGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCTTaa > 1:10024070/1‑67 (MQ=255) atGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCTTaa > 1:2059996/1‑67 (MQ=255) atGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCTTaa > 1:22201295/1‑67 (MQ=255) tGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCTTAAcc > 1:12920268/1‑68 (MQ=255) gACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCTTAAcc > 1:27659288/1‑67 (MQ=255) gACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCTTAAcc > 1:17879607/1‑67 (MQ=255) gACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCTTAAcc > 1:13885490/1‑67 (MQ=255) gACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCTTAAcc > 1:35298477/1‑67 (MQ=255) gACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCTTAAcc > 1:15513835/1‑67 (MQ=255) aCGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCTTAAccg > 1:20986195/1‑67 (MQ=255) cGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCTTAAccgcc < 1:18735321/68‑1 (MQ=255) cGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCTTAAccgcc < 1:18316323/68‑1 (MQ=255) cGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCTTAAccgcc < 1:16573945/68‑1 (MQ=255) cGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCTTAAccgcc > 1:29848185/1‑68 (MQ=255) gCCGGATGAaaagtcatccggcgtcatattactgcaactgtgccgcaattagcggccagcgggcgtca > 1:18040397‑M1/1‑9 (MQ=255) gCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCTTAAccgcc > 1:8884125/1‑67 (MQ=255) gCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCTTAAccgcc > 1:25975576/1‑67 (MQ=255) gCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCTTAAccgcc > 1:36910033/1‑67 (MQ=255) gCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCTTAAccgcc > 1:17306339/1‑67 (MQ=255) gCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCTTAAccgcc > 1:28478957/1‑67 (MQ=255) cGGATGAaaagtcatccggcgtcatattactgcaactgtgccgcaaatagcggccagcgggcgtcaaa < 1:23062638‑M1/68‑62 (MQ=255) cGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCTTAACcgccgc < 1:28161202/67‑1 (MQ=255) cGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCTTAACCgccgcc < 1:31975957/68‑1 (MQ=255) cGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCTTAACCgccgcc < 1:26091256/68‑1 (MQ=255) ggATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCTTAACCGCCGCCa < 1:24582835/68‑1 (MQ=255) gATGAaaagtcatccggcgtcatattactgcaactgtgccgcaattagcggccagcgggcgtcaaaa > 1:13130761‑M1/1‑5 (MQ=255) aTGAaaagtcatccggcgtcatattactgcaactgtgccgcaattagcggccagcgggcgtcaaaat < 1:22653660‑M1/67‑64 (MQ=255) tGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCTTAACCGCCGCCAGAt < 1:405797/68‑1 (MQ=255) tGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCTTAACCGCCGCCAGAt > 1:9610343/1‑68 (MQ=255) gACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCTTAACCGCCGCCAGATg < 1:10539468/68‑1 (MQ=255) | ACGGATGATTTTGACGCCCGCTGGCCGCTAATTGCGGCACAGTTGCAGTAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCTTAACCGCCGCCAGATGT > CP009273/3808400‑3808532 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |