| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 3808465 | NA (NA) | 7 (0.020) | 4/92 | NT | NA | noncoding (9/22 nt) | REP275 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP275 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | = 3808469 | NA (NA) | noncoding (13/22 nt) | REP275 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP275 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
Only 100 of 432 total aligned reads displayed.
GGATGATTTTGACGCCCGCTGGCCGCTAATTGCGGCACAGTTGCAGTAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCTTAACCGCCGCCAGATGTTCC > CP009273/3808402‑3808535 | tGACGCCCGCTGGCCGCTAATTGCGGCACAGTTGCAGTAATATGACGCCGGATGACTTTtcatccggc > 1:27451923‑M2/1‑59 (MQ=255) tGACGCCCGCTGGCCGCTAATTGCGGCACAGTTGCAGTAATATGACGCCGGATGACTTTtcatccggc > 1:18040397‑M2/1‑59 (MQ=255) aCGCCCGCTGGCCGCTAATTGCGGCACAGTTGCAGTAATATGACGCCGGATGACTTTTCATCCGGCGa > 1:2027854/1‑68 (MQ=255) cGCCCGCTGGCCGCTAATTGCTGCACAGTTGCAGTAATATGACGCCGGATGACTTTTCATCCGGCGa < 1:36631741/67‑1 (MQ=255) cGCCCGCTGGCCGCTAATTGCGGCACAGTTGCAGTAATATGACGCCGGATGACTTTTCATCCGGCGAg > 1:15458347/1‑68 (MQ=255) cGCCCGCTGGCCGCTAATTGCGGCACAGTTGCAGTAATATGACGCCGGATGACTTTTCATCCGGCGAg > 1:25157788/1‑68 (MQ=255) cGCCCGCTGGCCGCTAATTGCGGCACAGTTGCAGTAATATGACGCCGGATGACTTTTCATCCGGCGAg > 1:2168048/1‑68 (MQ=255) cGCCCGCTGGCCGCTAATTGCGGCACAGTTGCAGTAATATGACGCCGGATGACTTTTCATCCGGCGAg > 1:12411745/1‑68 (MQ=255) cGCCCGCTGGCCGCTAATTGCAGCACAGTTGCAGTAATATGACGCCGGATGACTTTtcatccggcgtc > 1:35175230‑M2/1‑56 (MQ=255) gCCCGCTGGCCGCTAATTGCGGCACAGTTGCAGTAATATGACGCCGGATGACTTTTCATCCGGCGAGt < 1:13006578/68‑1 (MQ=255) gCCCGCTGGCCGCTAATTGCGGCACAGTTGCAGTAATATGACGCCGGATGACTTTTCATCCGGCGAGt < 1:254891/68‑1 (MQ=255) gCCCGCTGGCCGCTAATTGCGGCACAGTTGCAGTAATATGACGCCGGATGACTTTTCATCCGGCGAGt > 1:27783973/1‑68 (MQ=255) gCCCGCTGGCCGCTAATTGCGGCACAGTTGCAGTAATATGACGCCGGATCACTTTTCATCCGGCGAGt < 1:20022938/68‑1 (MQ=255) ccGCTGGCCGCTAATTGCGGCACAGTTGCAGTAATATGACGCCGGATGACTTTtcatccggcgtcat > 1:525504‑M2/1‑53 (MQ=255) ccGCTGGCCGCTAATTGCGGCACAGTTGCAGTAATATGACGCCGGATGACTTTTCATCCGGCGAGtt < 1:925343/67‑1 (MQ=255) cGCTGGCCGCTAATTGCGGCACAGTTGCAGTAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTc < 1:34141279/68‑1 (MQ=255) cGCTGGCCGCTAATTGCGGCACAGTTGCAGTAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTc < 1:7406179/68‑1 (MQ=255) cGCTGGCCGCTAATTGCGGCACAGTTGCAGTAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTc < 1:15021359/68‑1 (MQ=255) cTGGCCGCTAATTGCGGCACAGTTGCAGTAATATGACGCCGGATGACTTTTCATCCGGCGAGTGTCtt > 1:13682013/1‑68 (MQ=255) gCCGCTAATTGCGGCACAGTTGCAGTAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTaa > 1:8306977/1‑68 (MQ=255) cGCTAATTGCGGCACAGTTGCAGTAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAAc < 1:30849788/68‑1 (MQ=255) gCTAATTGCGGCACAGTTGCAGTAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACg < 1:35723882/68‑1 (MQ=255) gCTAATTGCGGCACAGTTGCAGTAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACg < 1:11925476/68‑1 (MQ=255) tAATTGCGGCACAGTTGCAGTAATATGACGCCTGATGTCTTTTCATCCGGCGAGTTTCTTTAAACGc < 1:32910/67‑1 (MQ=255) tAATTGCGGCACAGTTGCAGTAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGc < 1:31168450/67‑1 (MQ=255) aaTTGCGGCACAGTTGCAGTAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCa > 1:21855463/1‑68 (MQ=255) tGCGGCACAGTTGCAGTAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAAc < 1:17640200/68‑1 (MQ=255) tGCGGCACAGTTGCAGTAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAAc < 1:12221487/68‑1 (MQ=255) ggCTCAGTTGCAGTAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAActct < 1:19292406/68‑1 (MQ=255) ggCACAGTTGCAGTAATATGACGCCGGAGGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAActct < 1:36971933/68‑1 (MQ=255) gCACAGATGCAGTAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTATAAACGCCAAActct > 1:12752191/1‑67 (MQ=255) acaGTTGCAGGAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTc > 1:22615320/1‑67 (MQ=255) tGCAGTAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTcgcg < 1:23688940/65‑1 (MQ=255) aGTAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTGTTTAAACGCCAAACTATTCGCGATAgg < 1:14444777/67‑1 (MQ=255) aGTAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAgg < 1:11361892/67‑1 (MQ=255) aGTAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAgg > 1:8767971/1‑67 (MQ=255) aGTAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAgg > 1:26071114/1‑67 (MQ=255) aGTAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAgg > 1:31548267/1‑67 (MQ=255) aGTAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAgg < 1:15636809/67‑1 (MQ=255) aGTAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAgg < 1:27115849/67‑1 (MQ=255) aGTAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAgg < 1:33988952/67‑1 (MQ=255) aGTAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAgg > 1:4577387/1‑67 (MQ=255) aGTAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAgg > 1:4312629/1‑67 (MQ=255) aGTAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAgg < 1:35440216/67‑1 (MQ=255) aGTAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAgg < 1:1860047/67‑1 (MQ=255) aGTAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAgg < 1:17341651/67‑1 (MQ=255) aGTAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAgg < 1:36269461/67‑1 (MQ=255) aGTAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAgg > 1:16435642/1‑67 (MQ=255) aGTAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAgg > 1:16086093/1‑67 (MQ=255) aGTAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTATTCGCGATAgg > 1:26442411/1‑67 (MQ=255) aGTAATATGACGCCGGATGACTTTCCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAgg < 1:34490957/67‑1 (MQ=255) tAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTACCCGCCAAACTCTTCGCGATAGGCCt > 1:22675637/1‑68 (MQ=255) tAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCt > 1:6341378/1‑68 (MQ=255) tAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCt > 1:32143743/1‑68 (MQ=255) tAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCt > 1:10342373/1‑68 (MQ=255) tAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCt > 1:7973562/1‑68 (MQ=255) tAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCt > 1:14750021/1‑68 (MQ=255) tAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCt > 1:2227650/1‑68 (MQ=255) tAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCt > 1:1402634/1‑68 (MQ=255) aaTATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTGTTCGCGATAGGc < 1:2060033/65‑1 (MQ=255) aaTATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGc < 1:11450380/65‑1 (MQ=255) aaTATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGc < 1:28295199/65‑1 (MQ=255) aaTATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGc < 1:32651645/65‑1 (MQ=255) aaTATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGc < 1:5641983/65‑1 (MQ=255) aaTATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCtt > 1:32710741/1‑68 (MQ=255) tatGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCTTa > 1:24426836/1‑67 (MQ=255) atGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCTTaa > 1:6963739/1‑67 (MQ=255) atGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCTTaa > 1:15839772/1‑67 (MQ=255) atGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCTTaa > 1:36522882/1‑67 (MQ=255) atGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCTTaa > 1:10024070/1‑67 (MQ=255) atGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCTTaa > 1:30564506/1‑67 (MQ=255) atGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCTTaa > 1:2585535/1‑67 (MQ=255) atGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCAAAACTCTTCGCGATAGGCCTTaa > 1:9368296/1‑67 (MQ=255) gACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCGAAACTCTTCGCGATAGGCCTTAGcc > 1:2151339/1‑67 (MQ=255) gACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCTTAAcc > 1:1333443/1‑67 (MQ=255) gACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCTTAAcc > 1:22825967/1‑67 (MQ=255) gACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCTTAAcc > 1:10785366/1‑67 (MQ=255) gACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCTTAAcc > 1:28545182/1‑67 (MQ=255) aCGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCTTAAccg > 1:20986195/1‑67 (MQ=255) cGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCTTAAccgcc > 1:2318775/1‑68 (MQ=255) cGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCTTAAccgcc < 1:14887836/68‑1 (MQ=255) cGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCTTAAccgcc < 1:17867600/68‑1 (MQ=255) cGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCTTAAccgcc < 1:18735321/68‑1 (MQ=255) cGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCTTAAccgcc < 1:29436351/68‑1 (MQ=255) cGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCTTAAccgcc > 1:29848185/1‑68 (MQ=255) gCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCTTAAccgccg < 1:28724826/68‑1 (MQ=255) gCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCTTAAccgcc > 1:25975576/1‑67 (MQ=255) gCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCTTAAccgcc > 1:15151821/1‑67 (MQ=255) gCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCTTAAccgcc > 1:16975510/1‑67 (MQ=255) gCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCTTAAccgcc > 1:23897719/1‑67 (MQ=255) gCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCTTAAccgcc > 1:24315045/1‑67 (MQ=255) gCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCTTAAccgcc > 1:29552771/1‑67 (MQ=255) ccGGATGACTTTTCAACCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCTTAAccgccg > 1:11706033/1‑67 (MQ=255) cGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCTTAACcgccgc < 1:27541871/67‑1 (MQ=255) cGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCTTAACCgccgcc < 1:31975957/68‑1 (MQ=255) tGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCTTAACCGCCGCCAGAt < 1:405797/68‑1 (MQ=255) tGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCTTAACCGCCGCCAGAt > 1:9610343/1‑68 (MQ=255) gACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCTTAACCGCCGCCAGATg < 1:10539468/68‑1 (MQ=255) aCTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCTTAACCGCCGCCAGATGt > 1:33698378/1‑68 (MQ=255) ttttCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCTTAACCGCCGCCAGATGtt > 1:27851040/1‑67 (MQ=255) | GGATGATTTTGACGCCCGCTGGCCGCTAATTGCGGCACAGTTGCAGTAATATGACGCCGGATGACTTTTCATCCGGCGAGTTTCTTTAAACGCCAAACTCTTCGCGATAGGCCTTAACCGCCGCCAGATGTTCC > CP009273/3808402‑3808535 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |