New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 108768 =342 (0.770)18 (0.050) 6/100 NT 5.6% coding (319/744 nt) zapD FtsZ stabilizer
?CP009273 108799 = 302 (0.760)coding (288/744 nt) zapD FtsZ stabilizer

Only 100 of 482 total aligned reads displayed.

CTGGGATGCTCAGTCGCTGACGCACCAGAGCAATCAAACGATCTTCACGCAGAAATTGCCCGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCTTCAATACGGCTCTGG  >  CP009273/108702‑108835
                                                                  |                                                                   
cagacctggattggcgtgcctggcgtggaccagagccgtattgaagcattaattcagcagttaaaagc                                                                    >  1:13523746‑M1/67‑68 (MQ=255)
  gggATGCTCAGTCGCTGACGCACCAGAGCAATCAAACGATCTTCACGCAGAAATTGCCCGATAcgcg                                                                   >  1:30797541/1‑67 (MQ=255)
   acctggattggcgtgcctggcgtggaccagagccgtattgaagcattaattcagcagttaaaagcggc                                                                 <  1:18915984‑M1/5‑1 (MQ=255)
   acctggattggcgtgcctggcgtggaccagagccgtattgaagcattaattcagcagttaaaagcggc                                                                 <  1:16506882‑M1/5‑1 (MQ=255)
    gATGCTCAGTCGCTGACGCACCAGAGCAATCAAACGATCTTCACGCAGAAATTGCCCGATAcgcggc                                                                 <  1:20107612/67‑1 (MQ=255)
    cctggattggcgtgcctggcgtggaccagagccgtattgaagcattaattcagcagttaaaagcggcg                                                                <  1:18484027‑M1/6‑1 (MQ=255)
    cctggattggcgtgcctggcgtggaccagagccgtattgaagcattaattcagcagttaaaagcggcg                                                                <  1:7255673‑M1/6‑1 (MQ=255)
    cctggattggcgtgcctggcgtggaccagagccgtattgaagcattaattcagcagttaaaagcggcg                                                                >  1:841391‑M1/63‑68 (MQ=255)
    cctggattggcgtgcctggcgtggaccagagccgtattgaagcattaattcagcagttaaaagcggcg                                                                <  1:24781968‑M1/6‑1 (MQ=255)
    cctggattggcgtgcctggcgtggaccagagccgtattgaagcattaattcagcagttaaaagcggc                                                                 >  1:21844292‑M1/63‑67 (MQ=255)
    cctggattggcgtgcctggcgtggaccagagccgtattgaagcattaattcagcagttaaaagcgg                                                                  >  1:15743840‑M1/63‑66 (MQ=255)
    cctggattggcgtgcctggcgtggaccagagccgtattgaagcattaattcagcagttaaaagcgg                                                                  >  1:27005622‑M1/63‑66 (MQ=255)
    cctggattggcgtgcctggcgtggaccagagccgtattgaagcattaattcagcacttaaaagcggcg                                                                <  1:6152699‑M1/6‑1 (MQ=255)
     aTGCTCAGTCGCTGACGCACCAGAGCAATCAAACGATCTTCACGCAGAAATTGCCCGATAcgcggcgc                                                               >  1:28197067/1‑68 (MQ=255)
         tCAGTCGCTGACGCACCAGAGCAATCAAACGATCTTCACGCAGAAATTGCCCGATACGCGGCGCGGa                                                            <  1:20986000/67‑1 (MQ=255)
         tCAGTCGCTGACGCACCAGAGCAATCAAACGATCTTCACGCAGAAATTGCCCGATACGCGGCGCGGa                                                            <  1:8056008/67‑1 (MQ=255)
         tCAGTCGCTGACGCACCAGAGCAATCAAACGATCTTCACGCAGAAATTGCCCGATACGCGGCGCGGa                                                            <  1:34050182/67‑1 (MQ=255)
          cAGTCGCTGACGCACCAGAGCAATCAAACGATCTTCACGCAGAAATTGCCCGATACGCGGCGCGGaaa                                                          <  1:31605140/68‑1 (MQ=255)
          cAGTCGCTGACGCACCAGAGCAATCAAACGATCTTCACGCAGAAATTGCCCGATACGCGGCGCGGaaa                                                          <  1:32701382/68‑1 (MQ=255)
          cAGTCGCTGACGCACCAGAGCAATCAAACGATCTTCACGCAGAAATTGCCCGATACGCGGCGCGGaaa                                                          <  1:36093893/68‑1 (MQ=255)
          cAGTCGCTGACGCACCAGAGCAATCAAACGATCTTCACGCAGAAATTGCCCGATACGCGGCGCGGaaa                                                          <  1:4193506/68‑1 (MQ=255)
          cAGTCGCTGACGCACCAGAGCAATCAAACGATCTTCACGCAGAAATTGCCCGATACGCGGCGCGGaaa                                                          <  1:52491/68‑1 (MQ=255)
          cAGTCGCTGACGCACCAGAGCAATCAAACGATCTTCACGCAGAAATTGCCCGATACGCGGCGCGGaaa                                                          >  1:12609100/1‑68 (MQ=255)
            gTCGCTGACGCACCAGAGCAATCAAACGATCTTCACGCAGAAATTGCCCGATACGCGGCGCGGAAAtt                                                        >  1:10659802/1‑68 (MQ=255)
             tCGCTGACGCACCAGAGCAATCAAACGATCTTCACGCAGAAATTGCCCGATACGCGGCGCGGAAAtt                                                        <  1:6679106/67‑1 (MQ=255)
              cGCTGACGCACCAGAGCAATCAAACGATCTTCACGCAGAAATTGCCCGATACGCGGCGCGGAAAtt                                                        <  1:1002384/66‑1 (MQ=255)
              cGCTGACGCACCAGAGCAATCAAACGATCTTCACGCAGAAATTGCCCGATACGCGGCGCGGAAATTaa                                                      >  1:19315877/1‑68 (MQ=255)
              cGCTGACGCACCAGAGCAATCAAACGATCTTCACGCAGAAATTGCCCGATACGCGGCGCGGAAATTaa                                                      >  1:29899831/1‑68 (MQ=255)
              cGCCGACGCACCAGAGCAATCAAACGATCTTCACGCAGAAATTGCCCGATACGCGGCGCGGAAAtt                                                        <  1:29523026/66‑1 (MQ=255)
                   aCGCACCAGAGCAATCAAACGATCTTCACGCAGAAATTGCCCGATACGCGGCGCGGAAATTAATAc                                                   >  1:5023542/1‑66 (MQ=255)
                    cGCACCAGAGCAATCAAACGATCTTCACGCAGAAATTGCCCGATACGCGGCGCGGAAATTAATACGCt                                                <  1:12862797/68‑1 (MQ=255)
                        ccAGAGCAATCAAACGATCTTCACGCAGAAATTGCCCGATACGCGGCGCGGAAATTAATACGCTcccc                                            <  1:14307963/68‑1 (MQ=255)
                            agCAATCAAACGATCTTCACGCAGAAATTGCCCGATACGCGGCGCGGAAATTAATACGCTCCccgcc                                         >  1:34948035/1‑67 (MQ=255)
                             gCAATCAAACGATCTTCACGCAGAAATTGCCCGATACGCGGCGCGGAAATTAATACGCTCCccgcc                                         >  1:5484099/1‑66 (MQ=255)
                             gCAATCAAACGATCTTCACGCAGAAATTGCCCGATACGCGGCGCGGAAATTAATACGCTCCccgcc                                         >  1:28857645/1‑66 (MQ=255)
                             gCAATCAAACGATCTTCACGCAGAAATTGCCCGATACGCGGCGCGGAAATTAATACGCTCCccgcc                                         >  1:18207352/1‑66 (MQ=255)
                             gCAATCAAACGATCTTCACGCAGAAATTGCCCGATACGCGGCGCGGAAATTAATACGCTCCccgcc                                         >  1:10918178/1‑66 (MQ=255)
                               aaTCAAACGATCTTCACGCAGAAATTGCCCGATACGCGGCGCGGAAATTAATACGCTCCCcgccgc                                       <  1:9551044/66‑1 (MQ=255)
                               aaTCAAACGATCTTCACGCAGAAATTGCCCGATACGCGGCGCGGAAATTAATACGCTCCCcgccgc                                       <  1:30173211/66‑1 (MQ=255)
                               aaTCAAACGATCTTCACGCAGAAATTGCCCGATACGCGGCGCGGAAATTAATACGCTCCCcgccgc                                       <  1:771323/66‑1 (MQ=255)
                               aaTCAAACGATCTTCACGCAGAAATTGCCCGATACGCGGCGCGGAAATTAATACGCTCCCcgccgc                                       <  1:19642949/66‑1 (MQ=255)
                               aaTCAAACGATCTTCACGCAGAAATTGCCCGATACGCGGCGCGGAAATTAATACGCTCCCcgccgc                                       <  1:14918981/66‑1 (MQ=255)
                               aaTCAAACGATCTTCACGCAGAAATTGCCCGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCtt                                     >  1:15329506/1‑68 (MQ=255)
                                  cAAACGATCTTCACGCAGAAATTGCCCGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTa                                  >  1:31938431/1‑68 (MQ=255)
                                  cAAACGATCTTCACGCAGAAATTGCCCGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTa                                  <  1:17790759/68‑1 (MQ=255)
                                  cAAACGATCTTCACGCAGAAATTGCCCGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTa                                  >  1:22498028/1‑68 (MQ=255)
                                     aCGATCTTCACGCAGAAATTGCCCGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAAct                               <  1:11097099/68‑1 (MQ=255)
                                     aCGATCTTCACGCAGAAATTGCCCGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAAct                               <  1:23257997/68‑1 (MQ=255)
                                       gATCTTCACGCAGAAATTGCCCGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAActgc                             <  1:24558280/68‑1 (MQ=255)
                                       gATCTTCACGCAGAAATTGCCCGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAActgc                             <  1:21648404/68‑1 (MQ=255)
                                       gATCTTCACGCAGAAATTGCCCGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAAct                               >  1:1702172/1‑66 (MQ=255)
                                       gATCTTCACGCAGAAATTGCCCGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAAct                               >  1:37132893/1‑66 (MQ=255)
                                        aTCTTCACGCAGAAATTGCCCGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAAct                               >  1:7501262/1‑65 (MQ=255)
                                         tCTTCACGCAGAAATTGCCCGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAActgctg                           >  1:33560497/1‑68 (MQ=255)
                                          cTTCACGCAGAAATTGCCCGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGa                          <  1:32088348/68‑1 (MQ=255)
                                           ttCACGCAGAAATTGCCCGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGaa                         <  1:24169321/68‑1 (MQ=255)
                                           ttCACGCAGAAATTGCCCGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGaa                         <  1:26510053/68‑1 (MQ=255)
                                           ttCACGCAGAAATTGCCCGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGaa                         >  1:26130214/1‑68 (MQ=255)
                                            agcattaattctgcagttaaaaGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTACCTGCTGAAt                        <  1:36204427‑M1/46‑1 (MQ=255)
                                            agcattaattcagcagttaaaaGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAAt                        <  1:3918077‑M1/46‑1 (MQ=255)
                                              aCGCAGAAATTGCCCGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTa                      <  1:27321135/68‑1 (MQ=255)
                                               cGCAGAAATTGCCCGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTaa                     >  1:23015684/1‑68 (MQ=255)
                                                gCAGAACTTGCCCGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTAAt                    <  1:25275959/68‑1 (MQ=255)
                                                gCAGAAATTGCCCGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTAAt                    >  1:12163933/1‑68 (MQ=255)
                                                     aaTTTCCCGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCt                 <  1:2437600/66‑1 (MQ=255)
                                                     aaTTGCCCGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCt                 <  1:19178009/66‑1 (MQ=255)
                                                     aaTTGCCCGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCt                 <  1:7023208/66‑1 (MQ=255)
                                                     aaTTGCCCGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCt                 <  1:13795450/66‑1 (MQ=255)
                                                     aaTTGCCCGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCt                 <  1:16847840/66‑1 (MQ=255)
                                                     aaTTGCCCGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCt                 <  1:25029818/66‑1 (MQ=255)
                                                     aaTTGCCCGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCt                 <  1:1614732/66‑1 (MQ=255)
                                                     aaTTGCCCGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCt                 <  1:9012557/66‑1 (MQ=255)
                                                     aaTTGCCCGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCt                 <  1:20777843/66‑1 (MQ=255)
                                                     aaTTGCCCGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCt                 <  1:20537297/66‑1 (MQ=255)
                                                     aaTTGCCCGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCt                 <  1:3247569/66‑1 (MQ=255)
                                                     aaTTGCCCGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCt                 <  1:31185531/66‑1 (MQ=255)
                                                      aTTGCCCGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCTTCa              <  1:5939746/68‑1 (MQ=255)
                                                        tGCCCGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCTTCAAt            <  1:30482676/68‑1 (MQ=255)
                                                        tGCCCGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCTTCAAt            <  1:34679276/68‑1 (MQ=255)
                                                        tGCCCGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCTTCAAt            <  1:27582340/68‑1 (MQ=255)
                                                          cccGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCTTCAATAc          >  1:17455559/1‑68 (MQ=255)
                                                          cccGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCTTCAATAc          >  1:4760010/1‑68 (MQ=255)
                                                          cccGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCTTCAATAc          >  1:25583590/1‑68 (MQ=255)
                                                          cccGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCTTCAATAc          >  1:22154926/1‑68 (MQ=255)
                                                          cccGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCTTCAATAc          >  1:35614455/1‑68 (MQ=255)
                                                          cccGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGATTCAATAc          >  1:26644350/1‑68 (MQ=255)
                                                             gATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCTTCAATACGGc       <  1:13088514/68‑1 (MQ=255)
                                                             gATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCTTCAATACGGc       <  1:23738098/68‑1 (MQ=255)
                                                             gATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCTTCAATACGGc       <  1:11323046/68‑1 (MQ=255)
                                                             gATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCTTCAATACGGc       <  1:4501853/68‑1 (MQ=255)
                                                             gATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCTTCAATACGGc       <  1:27761814/68‑1 (MQ=255)
                                                             gATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCTTCAATACGGc       <  1:28480910/68‑1 (MQ=255)
                                                             gATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCTTCAATACGGc       <  1:366647/68‑1 (MQ=255)
                                                             gATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCTTCAATACGGc       <  1:21109003/68‑1 (MQ=255)
                                                             gATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCTTCAATACGGc       <  1:33902039/68‑1 (MQ=255)
                                                             gATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCTTCAATACGGc       <  1:32615235/68‑1 (MQ=255)
                                                               tACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCTTCAATACGGct      <  1:12330487/67‑1 (MQ=255)
                                                               tACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCTTCAATACGGc       >  1:33112370/1‑66 (MQ=255)
                                                                aCGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCTTCAATACGGctct    <  1:36255595/68‑1 (MQ=255)
                                                                  GCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCTTCAATACGGCTCTgg  >  1:25783933‑M1/1‑68 (MQ=255)
                                                                  |                                                                   
CTGGGATGCTCAGTCGCTGACGCACCAGAGCAATCAAACGATCTTCACGCAGAAATTGCCCGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCTTCAATACGGCTCTGG  >  CP009273/108702‑108835

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.