| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 519440 = | 329 (0.740) | 20 (0.050) | 11/96 | NT | 5.0% | coding (724/4281 nt) | rhsD | Rhs family putative polymorphic toxin |
| ? | CP009273 | 519532 = | 471 (1.230) | coding (816/4281 nt) | rhsD | Rhs family putative polymorphic toxin | |||||
Only 100 of 443 total aligned reads displayed.
GCTGACGTACCGGCGTGAGGCCGCCGGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGAAGAGGCCCGCACCTCTTCGCT > CP009273/519373‑519507 | tGACGAACCGGCGGGAGGCCGCCGGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCcgg < 1:7501171/67‑1 (MQ=255) ggatacccctgtcggggccgtattcggtaccgggcagtgtgtcggggaacgctgaggctgagagaggg > 1:31538918‑M1/66‑68 (MQ=255) ggatacccctgtcggggccgtattcggtaccgggcagtgtgtcggggaacgctgaggctgagagaggg > 1:21218706‑M1/66‑68 (MQ=255) ggatacccctgtcggggccgtattcggtaccgggcagtgtgtcggggaacgctgaggctgagagaggg > 1:26348410‑M1/66‑68 (MQ=255) aCGTACCGGCGTGAGGCCGCCGGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCcgggcg > 1:9015606/1‑68 (MQ=255) aCGTACCGGCGTGAGGCCGCCGGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCcgggcg > 1:21326547/1‑68 (MQ=255) tacccctgtcggggccgtattcggtaccgggcagtgtgtcggggaacgctgaggctgagagaGGGCg > 1:33332234‑M1/63‑67 (MQ=255) gTACCGGCGTGAGGCCGCCGGTGCCCTGGCCGGGGAATTGACCGGCGGGAAGGTCGGTGCcgcgcggg > 1:17066636/1‑68 (MQ=255) gTACCGGCGTGAGGCCGCCGGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCcgggcggg > 1:33675246/1‑68 (MQ=255) gTACCGGCGTGAGGCCGCCGGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCcgggcggg < 1:22056494/68‑1 (MQ=255) aCCGGCGTGAGGCCGCCGGTGCCCTGGCCGGGGAAATCCCCGGCGGGACGGACGGTGACGGGCGGGAg > 1:1546975/1‑68 (MQ=255) aCCGGCGTGAGGCCGCCGGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAg > 1:5334697/1‑68 (MQ=255) aCCGGCGTGAGGCCGCCGGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAg > 1:26708483/1‑68 (MQ=255) cctgtcggggccgtattcggtcccgggcagtgtgtcggggaacgctgaggctgagagaGGGCGGGAGt > 1:8953479‑M1/59‑68 (MQ=255) ccGGCGTGAGGCCGCCGGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGt < 1:34579182/68‑1 (MQ=255) cGGCGTGAGGCCGCCGGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGt > 1:6358460/1‑67 (MQ=255) cGGCGTGAGGCCGCCGGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGt > 1:31284985/1‑67 (MQ=255) cGGCGTGAGGCCGCCGGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGt > 1:20823614/1‑67 (MQ=255) cGGCGTGAGGCCGCCGGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGt > 1:2056831/1‑67 (MQ=255) cGGCGTGAGGCCGCCGGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGt > 1:17725988/1‑67 (MQ=255) cGGCGTGAGGCCGCCGGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGt > 1:9442146/1‑67 (MQ=255) cGTGAGGCCGCCGGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCg > 1:22234202/1‑68 (MQ=255) gTGAGGCCGCCGGTGACCTGGCCGGGGAAATCCCCGGCGGGACGGACGGTGCCGGGCGGGAGTTCCGt < 1:8244866/68‑1 (MQ=255) gTGAGGCCGCCGGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCg > 1:12651428/1‑67 (MQ=255) gTGAGGCCGCCGGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGt < 1:17825164/68‑1 (MQ=255) gTGAGGCCGCCGGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGt < 1:25869184/68‑1 (MQ=255) gTGAGGCCGCCGGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGt < 1:29478241/68‑1 (MQ=255) tGAGGCCGCCGGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCg > 1:3478899/1‑66 (MQ=255) tGAGGCCGCCGGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCg > 1:20354693/1‑66 (MQ=255) aGGCCGCCGGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTg > 1:27050937/1‑68 (MQ=255) ggCCGCCGGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTgg > 1:3612482/1‑68 (MQ=255) gccgccGGTGACCTGGCCGGGGAAATCACCGGCGTGACGTACGGTGCCGGGCGGGAGTTCCGTCTGGt > 1:30086707/1‑68 (MQ=255) gccgccGGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGt > 1:24260485/1‑68 (MQ=255) gccgccGGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGt > 1:31891277/1‑68 (MQ=255) cgtattcggtaccgggcagtgtgtcggggaacgctgaggctgagagaGGGCGGGAGTTCCGTCTGGt > 1:30905886‑M1/48‑67 (MQ=255) cgtattcggtaccgggcagtgtgtcggggaacgctgaggctgagagaGGGCGGGAGTTCCGTCTGGt > 1:16614666‑M1/48‑67 (MQ=255) acgccgGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGt > 1:11119195/2‑67 (MQ=255) ccgGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCt > 1:13089580/1‑67 (MQ=255) cgGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGa < 1:28448233/68‑1 (MQ=255) cgGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGa < 1:511186/68‑1 (MQ=255) tcggtaccgggcagtgtgtcggggaacgctgaggctgagagaGGGCggg < 1:14784444‑M1/7‑1 (MQ=255) gTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGAcc > 1:1393162/1‑68 (MQ=255) tGACCTGGCCGGGGACATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGAcc < 1:7676774/67‑1 (MQ=255) gACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCAc > 1:15959599/1‑68 (MQ=255) ccTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGc > 1:29344416/1‑68 (MQ=255) ccTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGc > 1:32408386/1‑68 (MQ=255) ccTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGc > 1:14514159/1‑68 (MQ=255) ccTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGc > 1:13691535/1‑68 (MQ=255) cTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCa < 1:24575924/68‑1 (MQ=255) cTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCa < 1:30481422/68‑1 (MQ=255) ggCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAgg < 1:29106757/68‑1 (MQ=255) cccGGGGACCGCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAgg < 1:26161429/66‑1 (MQ=18) ccGGGGAAATCCCCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAgg < 1:8695610/66‑1 (MQ=255) gAACTCCCCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTGTGGTGCTGACCACGCAGGCGCAGc < 1:35895747/67‑1 (MQ=18) gAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGc < 1:19980848/67‑1 (MQ=255) gAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCg > 1:30349597/1‑68 (MQ=255) taccACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGt < 1:18675302/64‑1 (MQ=255) ctcggggaacgccgaggctgagagaGGGCGGGAGTTCCGTCTGGGGCTGACCACGCAGGCGCAGCGt > 1:12295533‑M1/26‑67 (MQ=255) actCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGt < 1:31960878/65‑1 (MQ=255) acccACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGt < 1:13476744/64‑1 (MQ=255) aaTCCCCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGt < 1:12895454/67‑1 (MQ=255) aaTCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGt < 1:11856487/67‑1 (MQ=255) aaTCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGt < 1:10633160/67‑1 (MQ=255) aaTCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGt < 1:35377852/67‑1 (MQ=255) aTCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGc < 1:32667552/68‑1 (MQ=255) aTCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGc < 1:23109683/68‑1 (MQ=255) aCCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGa < 1:4036339/68‑1 (MQ=255) aCCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGa < 1:37157876/68‑1 (MQ=255) aCCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGa < 1:10153026/68‑1 (MQ=255) aCCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGa < 1:4809787/68‑1 (MQ=255) aCCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGa < 1:21613167/68‑1 (MQ=255) aCCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGa < 1:15077381/68‑1 (MQ=255) ccGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGaa > 1:5914660/1‑68 (MQ=255) ccGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTCTTTAAGACCACTCCGGCGCAGCCAGCGGaa > 1:36603882/1‑68 (MQ=16) ggCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGAaga > 1:29847128/1‑68 (MQ=255) gggacggacgGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGAAGAgg < 1:35248428/65‑1 (MQ=255) gTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGAAGAgg < 1:3216958/67‑1 (MQ=255) gTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGAAGAgg < 1:25214860/67‑1 (MQ=255) gTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGAAGAgg < 1:2392379/67‑1 (MQ=255) gTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGAAGAGGc < 1:34375955/68‑1 (MQ=255) gacggacgGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGAAGAGGccc < 1:6703754/68‑1 (MQ=255) cggacggTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGAAGAGGCCCGc > 1:10485898/1‑68 (MQ=255) ggacggTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGCAGAGGCCCGc > 1:11622812/1‑67 (MQ=255) ggacggTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGAAGAGGCCCGCa < 1:27601388/68‑1 (MQ=255) gctgagagaGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGAAGAGGCCCGCa < 1:4630797‑M1/58‑1 (MQ=255) cggTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGAAGAGGCCCGCAcc < 1:22935707/67‑1 (MQ=255) cggTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGAAGAGGCCCGCAcc < 1:20998565/67‑1 (MQ=255) cggTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGAAGAGGCCCGCACct < 1:17454953/68‑1 (MQ=255) cggTGCCGGGCGGGAGTTCCGTCTGGGGCTGACCACGCAGGCGCAGCGTGCGGAAGAGGCCCGCAcc < 1:32891450/67‑1 (MQ=255) cggTGCCGGGCGGGAGGTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGAAGAGGCCCGCAcc < 1:28157250/67‑1 (MQ=255) ggTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGAAGAGGCCCGCAcc > 1:12126019/1‑66 (MQ=255) ggTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGAAGAGGCCCGCACctc < 1:19646108/68‑1 (MQ=255) ggTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGAAGAGGCCCGCACctc < 1:19379373/68‑1 (MQ=255) gCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGAAGAGGCCCGCACCTCTTc > 1:2240112/1‑68 (MQ=255) gCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGAAGAGGCCCGCACCTCTTc < 1:19871444/68‑1 (MQ=255) ccGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGAAGAGGCCCGCACCTCTTc > 1:35662130/1‑67 (MQ=255) ccGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGAAGAGGCCCGCACCTCTTc > 1:7139656/1‑67 (MQ=255) cgggcgggAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGAAGAGGCCCGCACCTCTTCGc < 1:2325255/68‑1 (MQ=255) cgggcgggAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGAAGAGGCCCGCACCTCTTCGc < 1:36938328/68‑1 (MQ=255) cgggcgggAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGAAGAGGCCCGCACCTCTTCGc < 1:9562367/68‑1 (MQ=255) | GCTGACGTACCGGCGTGAGGCCGCCGGTGACCTGGCCGGGGAAATCACCGGCGTGACGGACGGTGCCGGGCGGGAGTTCCGTCTGGTGCTGACCACGCAGGCGCAGCGTGCGGAAGAGGCCCGCACCTCTTCGCT > CP009273/519373‑519507 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |