| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 519440 = | 329 (0.740) | 20 (0.050) | 11/96 | NT | 5.0% | coding (724/4281 nt) | rhsD | Rhs family putative polymorphic toxin |
| ? | CP009273 | 519532 = | 471 (1.230) | coding (816/4281 nt) | rhsD | Rhs family putative polymorphic toxin | |||||
Only 100 of 621 total aligned reads displayed.
CACGCAGGCGCAGCGTGCGGAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCGAATACGGCCCCGACAGGGGTATCCGCC > CP009273/519466‑519599 | cACGCAGGCGCAGCGTGCGGAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCctc < 1:5178519/68‑1 (MQ=255) aCGCAGGCGCAGCGTGCGGAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCctct < 1:22012358/68‑1 (MQ=255) aCGCAGGCGCAGCGTGCGGAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCctct < 1:23120329/68‑1 (MQ=255) aCGCAGGCGCAGCGTGCGGAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCctct < 1:25422019/68‑1 (MQ=255) aCGCAGGCGCAGCGTGCGGAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCctct < 1:27261010/68‑1 (MQ=255) aCGCAGGCGCAGCGTGCGGAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCctct < 1:1506034/68‑1 (MQ=255) aCGCAGGCGCAGCGTGCGGAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCctct < 1:35657410/68‑1 (MQ=255) gCAGGCGCAGCGTGCGGAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCctctct < 1:6151542/68‑1 (MQ=255) cAGGCGCAGCGTGCGGAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCctctct > 1:32331138/1‑67 (MQ=255) cAGGCGCAGCGTGCGGAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCtctctc > 1:19373176/1‑68 (MQ=255) cAGGCGCAGCGTGCGGAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCtctctc > 1:8618423/1‑68 (MQ=255) cAGGCGCAGCGTGCGGAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCtctctc > 1:11998952/1‑68 (MQ=255) ggCGCAGCGTGCGGAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTctca > 1:34374830/1‑67 (MQ=255) cgcAGCGTGCGGAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTctcagc < 1:9362727/67‑1 (MQ=255) cgcAGCGTGCGGAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTctcag > 1:1488734/1‑66 (MQ=255) cgcAGCGTGCGGAAGAGGCCCGCAACTCTTCGCTATCTTCTTCTGACAGTTCGCGCCCTCTctcagc < 1:36226569/67‑1 (MQ=255) gcAGCGTGCGGAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTctcagcc > 1:13698117/1‑67 (MQ=255) aGCGTGCGGAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTctcagcctca > 1:8867490/1‑68 (MQ=255) aGCGTGCGGAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTctcagcctca > 1:11866075/1‑68 (MQ=255) cGTGCGGAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTctcagcctcagc > 1:9023462/1‑68 (MQ=255) cGTGCGGAAGAGGCCCGCACCTCTTCGCTATCGTCTTCTGACAGTTCCCGCCCTCTctcagccttagc > 1:20410269/1‑68 (MQ=255) gCGGAAGAGGCCCGCTCCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGtt < 1:35460731/68‑1 (MQ=255) gCGGAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGtt < 1:17458363/68‑1 (MQ=255) gCGGAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGtt < 1:19967558/68‑1 (MQ=255) ggAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTcc < 1:18659989/68‑1 (MQ=255) ggAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTcc < 1:31386032/68‑1 (MQ=255) ggAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTcc < 1:31881872/68‑1 (MQ=255) gAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTcc > 1:55338/1‑67 (MQ=255) agagGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTGTCAGCCTCAGCGTTcccc < 1:26542080/67‑1 (MQ=255) agagGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTcccc < 1:25804881/67‑1 (MQ=255) agagGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTcccc < 1:29521469/67‑1 (MQ=255) agagGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTcccc < 1:1031188/67‑1 (MQ=255) agagGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTcccc < 1:16537366/67‑1 (MQ=255) agagGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTcccc < 1:19848948/67‑1 (MQ=255) agagGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCg > 1:21066048/1‑68 (MQ=255) agagGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCg > 1:10073831/1‑68 (MQ=255) agagGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCg > 1:7640868/1‑68 (MQ=255) agagGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCg > 1:31580429/1‑68 (MQ=255) ggCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGac > 1:332112/1‑67 (MQ=255) ggCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGac > 1:25960858/1‑67 (MQ=255) acgctgcgcctgcgtggtcagcaccagacggaactcccgcccTCTCTCAGCCTCAGCGTTCCCCGac > 1:31039571‑M2/43‑67 (MQ=255) gctgcgcctgcgtggtcagcaccagacggaactcccgcccTCTCTCCGCCTCAGCGTTCCCCGccac > 1:32866738‑M2/41‑67 (MQ=255) cccGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGacac < 1:22932155/67‑1 (MQ=255) cccGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGacac > 1:5836221/1‑67 (MQ=255) cccGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGacac > 1:13239754/1‑67 (MQ=255) cccGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGacac < 1:14582171/67‑1 (MQ=255) cccGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGacac < 1:2635275/67‑1 (MQ=255) cGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGacacaca < 1:20642133/68‑2 (MQ=255) aCCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGc < 1:23843111/67‑1 (MQ=255) aCCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGc < 1:16839150/67‑1 (MQ=255) aCCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGc > 1:28773731/1‑67 (MQ=255) aCCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGc > 1:29130670/1‑67 (MQ=255) ctTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGt < 1:18975681/68‑1 (MQ=255) ctTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGt < 1:33605891/68‑1 (MQ=255) ctTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGt < 1:138126/68‑1 (MQ=255) ctTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGt < 1:32664643/68‑1 (MQ=255) ctTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGt < 1:36684738/68‑1 (MQ=255) ctTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGt < 1:3809506/68‑1 (MQ=255) ctTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGt > 1:16097225/1‑68 (MQ=255) ctTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGt < 1:11550217/68‑1 (MQ=255) ctTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGt < 1:17906812/68‑1 (MQ=255) ctTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTAAGCCTCATCGTTCCCCGACACACTGCCCGGt < 1:10714531/68‑1 (MQ=255) tCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGCCACACTGCCCGGTa > 1:448268/1‑67 (MQ=255) tCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTAc < 1:6644801/68‑1 (MQ=255) tCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTAc < 1:28085050/68‑1 (MQ=255) tCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTAc < 1:27618114/68‑1 (MQ=255) cGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTAcc < 1:11173177/68‑1 (MQ=255) gCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCg > 1:5949656/1‑68 (MQ=255) gCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCg > 1:15423830/1‑68 (MQ=255) gCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCg > 1:35208340/1‑68 (MQ=255) gCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCCACACACTGCCCGGTACCg > 1:25047791/1‑68 (MQ=255) tcagcaccagacggaactcccgcccTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCGaa > 1:6946498‑M2/26‑68 (MQ=255) tATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCGa < 1:36064757/67‑1 (MQ=255) aTCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCGAAt > 1:25647523/1‑68 (MQ=255) aTCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCGAAt < 1:14272057/68‑1 (MQ=255) cttcttctGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCGAATAc > 1:15136868/1‑68 (MQ=255) cttcttctGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCGAATAc > 1:17091997/1‑68 (MQ=255) ttcttctGACAGTTCCCGCCCTCTCTCAGCCTCAGGGTTCCCCGACACACTGCCCGGTACCGAATACg > 1:22494780/1‑68 (MQ=255) ttcttctGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCGAATACg > 1:21554735/1‑68 (MQ=255) cttctGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCGAATACGGc < 1:24545382/68‑1 (MQ=255) cttctGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCGAATACGGc < 1:23512881/68‑1 (MQ=255) tctGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCGAATACGGccc < 1:18221558/68‑1 (MQ=255) tctGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCGAATACGGcc > 1:34006103/1‑67 (MQ=255) tctGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCGAATACGGcc > 1:2426431/1‑67 (MQ=255) tGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCGAATACGGCCCCg < 1:30609034/68‑1 (MQ=255) tGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCGAATACGGCCCCg > 1:2618121/1‑68 (MQ=255) tGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCGAATACGGCCCCg < 1:7445657/68‑1 (MQ=255) tGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCGAATACGGCCCCg < 1:31749598/68‑1 (MQ=255) aCAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCGAATACGGCCCCgcc > 1:28522455/1‑66 (MQ=255) aCAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCGAATACGGCCCCGAc > 1:34848878/1‑68 (MQ=255) aCAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCGAATACGGCCCCGAc > 1:10954453/1‑68 (MQ=255) aCAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCGAATACGGCCCCGAc > 1:7776254/1‑68 (MQ=255) aCAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCGAATACGGCCCCGAc > 1:29964314/1‑68 (MQ=255) aCAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCGAATACGGCCCCGAc > 1:30285164/1‑68 (MQ=255) aCAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCGAATACGGCCCCGAc > 1:1242233/1‑68 (MQ=255) aCAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCGAATACGGCCCCGAc > 1:48111/1‑68 (MQ=255) cgcccTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCGAATACGGCCCCGACAGGGGTa > 1:2173368‑M2/6‑67 (MQ=255) cgcccTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCGAATACGGCCCCGACAGGGGTa > 1:8149618‑M2/6‑67 (MQ=255) cccTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCGAATACGGCCCCGACAGGGGTATcc > 1:21273470‑M2/4‑68 (MQ=255) cccTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCGAATACGGCCCCGACAGGGGTATcc > 1:12897835‑M2/4‑68 (MQ=255) | CACGCAGGCGCAGCGTGCGGAAGAGGCCCGCACCTCTTCGCTATCTTCTTCTGACAGTTCCCGCCCTCTCTCAGCCTCAGCGTTCCCCGACACACTGCCCGGTACCGAATACGGCCCCGACAGGGGTATCCGCC > CP009273/519466‑519599 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |