| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 775865 | 448 (1.010) | 24 (0.070) | 9/88 | NT | 6.3% | intergenic (+20/‑145) | ybgF/lysT | periplasmic TolA‑binding protein/tRNA‑Lys |
| ? | CP009273 | = 775875 | 362 (1.040) | intergenic (+30/‑135) | ybgF/lysT | periplasmic TolA‑binding protein/tRNA‑Lys | |||||
Only 100 of 903 total aligned reads displayed.
GGTACTGATGGCGCTAAACAGGCACAAAAACGTCTGAACGCGATGTAATGCATAACACACGACCAGAAGTCGCATTATTTCTGGTCGTGTCGTGCGAATCATAAGCAGTTGAGTGATCTACATCGAAATTTTTGT > CP009273/775798‑775932 | acttgagcgcaacaaaaatttcgatgtagatcactcaactgcttatgattcgcacgACACGACCAGaa < 1:16805582‑M1/12‑1 (MQ=255) tACTGATGGCGCTAAACAGGCACAAAAACGTCTGAACGAGATGTAATGCAAAACACACGACCAGAAg > 1:29162258/1‑67 (MQ=255) aCTGATGGCGCTAAACATGCACCAAAACGTCTGAACGCGATGTAATGCATAACACACGACCAGAAGTc > 1:5618826/1‑68 (MQ=255) aCTGATGGCGCTAAACAGGCACAAAAACGTCTGAACGCGATGTAATGCATAACACACGACCAGAAGTc > 1:34504212/1‑68 (MQ=255) aCTGATGGCGCTAAACAGGCACAAAAACGTCTGAACGCGATGTAATGCATAACACACGACCAGAAGTc > 1:28564839/1‑68 (MQ=255) aCTGATGGCGCTAAACAGGCACAAAAACGTCTGAACGCGATGTAATGCATAACACACGACCAGAAGTc > 1:26217432/1‑68 (MQ=255) aCTGATGGCGCTAAACAGGCACAAAAACGTCTGAACGCGATGTAATGCATAACACACGACCAGAAGTc > 1:20143659/1‑68 (MQ=255) aCTGATGGCGCTAAACAGGCACAAAAACGTCTGAACGCGATGTAATGCATAACACACGACCAGAAGTc > 1:19012645/1‑68 (MQ=255) tGATGGCGCTAAACAGGCACAAAAACGTCTGAACGCGATGTAATGCATAACACACGACCAGAAGTCGc > 1:12121735/1‑68 (MQ=255) tGATGGCGCTAAACAGGCACAAAAACGTCTGAACGCGATGTAATGCATAACACACGACCAGAAGTCGc > 1:21333754/1‑68 (MQ=255) gATGGCTCTAAACAGGCACAAAAACGTCTGAACGCGATGTAATGCATAACACACGACCAGAAGTCGCa < 1:10448138/68‑1 (MQ=255) gATGGCTCTAAACAGGCAAAAAAACGTCTGAACGCGATGTAATGCATAACACACGACCAGAAGTCGCa < 1:835403/68‑1 (MQ=255) gATGGCGCTAAACAGGGACAAATCCGTCTGAACGCGATGTAATGCATAACACACGACCAGAAGTCGCa < 1:27118290/68‑1 (MQ=255) gATGGCGCTAAACAGGCACAAAAACGTCTGAACGCGATGTAATGCATAACACACGACCAGAAGTCGCa > 1:24977407/1‑68 (MQ=255) aTGGCGCTAAACAGGCACAAAAACGTCTGAACGCGATGTAATGCATAACACACGACCAGAAGTCGCat > 1:2291947/1‑68 (MQ=255) aTGGCGCTAAACAGGCACAAAAACGTCTGAACGCGATGTAATGCATAACACACGACCAGAAGTCGCat > 1:7640063/1‑68 (MQ=255) aTGGCGCTAAACAGGCACAAAAACGTCTGAACGCGATGTAATGCATAACACACGACCAGAAGTCGCat > 1:6591936/1‑68 (MQ=255) tGGCGCTAAACAGGCACAAAAACGTCTGAACGCGATGTAATGCATAACACACGACCAGAAGTCGCatt > 1:13886127/1‑68 (MQ=255) tGGCGCTAAACAGGCACAAAAACGTCTGAACGCGATGTAATGCATAACACACGACCAGAAGTCGCatt > 1:28143376/1‑68 (MQ=255) tGGCGCTAAACAGGCACAAAAACGTCTGAACGCGATGTAATGCATAACACACGACCAGAAGTCGCatt > 1:18335338/1‑68 (MQ=255) tGGCGCTAAACAGGCACAAAAACGTCTGAACGCGATGTAATGCATAACACACGACCAGAAGTCGCatt > 1:5070621/1‑68 (MQ=255) cgcTAAACAGGCACAAAAACGTCTGAACGCGATGTAATGCATAACACACGACCAGAAGTCGCattat < 1:4501975/67‑1 (MQ=255) cgcTAAACAGGCACAAAAACGTCTGAACGCGATGTAATGCATAACACACGACCAGAAGTCGCattat < 1:12532974/67‑1 (MQ=255) aCAGGCACAAAAACGTCTGAACGCGATGTAATGCATAACACACGACCAGAAGTCGCATTATttctggt > 1:13095711‑M2/1‑61 (MQ=255) aCAGGCACAAAAACGTCTGAACGCGATGTAATGCATAACACACGACCAGAAGTCGCATTATttctgg < 1:36193815‑M2/67‑7 (MQ=255) aCAGGCACAAAAACGTCTGAACGCGATGTAATGCATAACACACGACCAGAAGTCGCATTATttctgg < 1:619986‑M2/67‑7 (MQ=255) cAGGCACAAAAACGTCTGAACGCGATGTAATGCATAACACACGACCAGAAGTCGCATTATttctggtc < 1:36501710‑M2/68‑9 (MQ=255) ggCAGATAAACGTCTGACCGCGATGTAATGCATAACACACGACCAGAAGTCGCATTATttctggtcgt > 1:12965877‑M2/1‑58 (MQ=255) cacaAAAACGTCTGAACGCGATGTAATGCATAACACACGACCAGAAGTCGCATTATttctggtcgtg > 1:25890274‑M2/1‑56 (MQ=255) aCGTCTGAACGCGATGTAATGCATAACACACGACCAGAAGTCGCATTATttctggtcgtgtgttatgc > 1:17467149‑M2/1‑49 (MQ=255) aCGTCTGAACGCGATGTAATGCATAACACACGACCAGAAGTCGCATTATttctggtcgtgtgttatgc > 1:17322780‑M2/1‑49 (MQ=255) cGTCTGAACGCGATGTAATGCATAACATACGACCAGAAGTCGCATTATTTCTGGTCGTGTCGTGCGaa > 1:34263406/1‑68 (MQ=255) cGTCTGAACGCGATGTAATGCATAACACACGACCAGAAGTCGCATTATTTCTGGTCGTGTCGTGCGaa < 1:31474462/68‑1 (MQ=255) gTCTGAACGCGATGTAATGCATAACTCACGACCAGAAGTCGCATTATTTCTGGTCGTGTCGTGCGAAt < 1:34655443/68‑1 (MQ=255) gTCTGAACGCGATGTAATGCATAACACACGACCAGAAGTCGCATTATTTCTGGTCGTGTCGTGCGaa > 1:29459454/1‑67 (MQ=255) gTCTGAACGCGATGTAATGCATAACACACGACCAGAAGTCGCATTATTTCTGGTCGTGTCGTGCGAAt < 1:244116/68‑1 (MQ=255) gTCTGAACGCGATGTAATGCATAACACACGACCAGAAGTCGCATTATTTCTGGTCGTGTCGTGCGAAt < 1:3326197/68‑1 (MQ=255) gTCTGAACGCGATGTAATGCATAACACACGACCAGAAGTCGCATTATTTCTGGTCGTGTCGTGCGAAt < 1:18816510/68‑1 (MQ=255) gTCTGAACGCGATGTAATGCATAACACACGACCAGAAGTCGCATTATTTCTGGTCGTGTCGTGCGAAt < 1:32095600/68‑1 (MQ=255) gTCTGAACGCGATGTAATGCATAACACACGACCAGAAGTCGCATTATTTCTGGTCGTGTCGTGCGAAt < 1:30266802/68‑1 (MQ=255) actgcttatgattcgcacgACACGACCAGAAGTCGCATTATTTCTGGTCGTGTCGTGCGAATCATaa < 1:3699136‑M1/48‑1 (MQ=255) cgcgATGTAATGCATAACACACGACCAGAAGTCGCATTATTTCTGGTCGTGTCGTGCGAATCATAAGc < 1:13651019/68‑1 (MQ=255) cgcgATGTAATGCATAACACACGACCAGAAGTCGCATTATTTCTGGTCGTGTCGTGCGAATCATAAGc < 1:12763524/68‑1 (MQ=255) cgcgATGTAATGCATAACACACGACCAGAAGTCGCATTATTTCTGGTCGTGTCGTGCGAATCAAAAGc < 1:7355312/68‑1 (MQ=255) gcgATGTAATGCATAACACACGACCAGAAGTCGCATTATTTCTGGTCGTGTCGTGCGAATCATAAGCa > 1:33563673/1‑68 (MQ=255) gcgATGTAATGCATAACACACGACCAGAAGTCGCATTATTTCTGGTCGTGTCGTGCGAATCATAAGCa > 1:1336648/1‑68 (MQ=255) gcgATGTAATCCATACCACACGACCCGAAGGCGCATTATttctggtcgtgtgttatgcattacatcgc > 1:19674434‑M2/1‑39 (MQ=255) gcttatgattcgcacgACACGACCAGAAGTCGCATTATTTCTGGTCGTGTCGTGCGAATCATAAGCAg < 1:28841163‑M1/52‑1 (MQ=255) gATGTAATGCATAACACACGACCAGAAGTCGCATTATTTCTGGTCGTGTCGTGCGAATCATAAGCAGt < 1:30932699/68‑1 (MQ=255) tGTAATGCATAACACACGACCAGAAGTCGCATTATTTCTGGTCGTGTCGTGCGAATCATAAGc < 1:19941319/63‑1 (MQ=255) gTAATGCATAACACACGACCAGAAataatgcgacttctggtcgtgtgttatgcattacatcgcgttca > 1:3293274‑M1/1‑24 (MQ=255) aaTGCATAACACACGACCAGAAGTCGCATTATTTCTGGTCGTGTCGTGCGAATCATAAGCAGTTGAGt < 1:24619020/68‑1 (MQ=255) aaTGCATAACACACGACCAGAAGTCGCATTATTTCTGGTCGTGTCGTGCGAATCATAAGCAGTTGAGt < 1:9551048/68‑1 (MQ=255) aaTGCATAACACACGACCAGAAGTCGCATTATTTCTGGTCGTGTCGTGCGAATCATAAGCAGTTGAGt < 1:33964816/68‑1 (MQ=255) aTGCATAACACACGACCAGAAGTCGCATTATTTCTGGTCGTGTCGTGCGAATCATAAGCAGTTGAGTg > 1:5909339/1‑68 (MQ=255) tGCATAACACACGACCAGAAGTCGCATTATTTCTGGTCGTGTCGTGCGAATCATAAGCAGTTGAGTGa < 1:22735787/68‑1 (MQ=255) tGCATAACACACGACCAGAAGTCGCATTATTTCTGGTCGTGTCGTGCGAATCATAAGCAGTTGAGTGa < 1:2999525/68‑1 (MQ=255) tGCATAACACACGACCAGAAGTCGCATTATTTCTGGTCGTGTCGTGCGAATCATAAGCAGTTGAGTGa < 1:20762878/68‑1 (MQ=255) gcttAACACACGACCAGAAGTCGCTTTATTTCTGGTCGTGTCGTGCGAATCATAAGCAGTTGAGTGa > 1:8865282/4‑67 (MQ=255) gCATAACACACGACCAGAAGTCGCATTATTTCTGGTCGTGTCGTGCGAATCGTAAGCAGTTGAGTGa > 1:31813310/1‑67 (MQ=255) gCATAACACACGACCAGAAGTCGCATTATTTCTGGTCGTGTCGTGCGAATCATAAGCAGTTGGGTGa > 1:35903095/1‑67 (MQ=255) gCATAACACACGACCAGAAGTCGCATTATTTCTGGTCGTGTCGTGCGAATCATAAGCAGTTGAGTGa > 1:8057890/1‑67 (MQ=255) gCATAACACACGACCAGAAGTCGCATTATTTCTGGTCGTGTCGTGCGAATCATAAGCAGTTGAGTGa > 1:10004702/1‑67 (MQ=255) gCATAACACACGACCAGAAGTCGCATTATTTCTGGTCGTGTCGTGCGAATCATAAGCAGTTGAGTGa > 1:391808/1‑67 (MQ=255) gCATAACACACGACCAGAAGTCGCATTATTTCTGGTCGTGTCGTGCGAATCATAAGCAGTTGAGTGa > 1:27951687/1‑67 (MQ=255) gCATAACACACGACCAGAAGTCGCATTATTTCTGGTCGTGTCGTGCGAATCATAAGCAGTTGAGTGa > 1:14224044/1‑67 (MQ=255) gCATAACACACGACCAGAAGTCGCATTATTTCTGGTCGTGTCGTGCGAATCATAAGCAGTTGAGTGa > 1:11573607/1‑67 (MQ=255) gCATAACACACGACCAGAAGTCGCATTATTTCTGGTCGTGTCGTGCGAATCATAAGCAGTTGAGTGa > 1:25302520/1‑67 (MQ=255) gCATAACACACGACCAGAAGTCGCATTATTTCTGGTCGTGTCGTGCGAATCATAAGCAGTTGAGTGa > 1:24133524/1‑67 (MQ=255) gCATAACACACGACCAGAAGTCGCATTATTTCTGGTCGTGTCGTGCGAATCATAAGCAGTTGAGTGa > 1:22359740/1‑67 (MQ=255) gCATAACACACGACCAGAAGTCGCATTATTTCTGGTCGTGTCGTGCGAATCATAAGCAGTTGAGTGa > 1:24009414/1‑67 (MQ=255) gCATAACACACGACCAGAAGTCGCATTATTTCTGGTCGTGTCGTGCGAATCATAAGCAGTTGAGTGa > 1:23224085/1‑67 (MQ=255) aTAACACACGACCAGAAataatgcgacttctggtcgtgtgttatgcattacatcgcgttcagacgttt > 1:11154298‑M1/1‑17 (MQ=255) aTAACACACGACCAGAAGTCGCATTATTTCTGGTCGTGTCGTGCGAATCATAAGCAGTTGAGTGATCt > 1:5559718/1‑68 (MQ=255) aTAACACACGACCAGAAGTCGCATTATTTCTGGTCGTGTCGTGCGAATCATAAGCAGTTGAGTGATCt > 1:1455936/1‑68 (MQ=255) aTAACACACGACCAGAAGTCGCATTATTTCTGGTCGTGTCGTGCGAATCATAAGCAGTTGAGTGATCt > 1:35034609/1‑68 (MQ=255) aTAACACACGACCAGAAGTCGCATTATTTCTGGTCGTGTCGTGCGAATCATAAGCAGTTGAGTGATCt > 1:7039203/1‑68 (MQ=255) acacacGACCAGAAGTCGCATTATTTCTGGTCGTGTCGTGCGAATCATAAGCAGTTGAGTGATCTACa > 1:15871479/1‑68 (MQ=255) acacacGACCAGAAGTCGCATTATTTCTGGTCGTGTCGTGCGAATCATAAGCAGTTGAGTGATCTACa > 1:20349749/1‑68 (MQ=255) acacacGACCAGAAGTCGCATTATTTCTGGTCGTGTCGTGCGAATCATAAGCAGTTGAGTGATCTACa > 1:1782527/1‑68 (MQ=255) acacGACCAGAAataatgcgacttctggtcgtgtgttatgcattacatcgcgttcagacgtttttgt > 1:15371685‑M1/1‑12 (MQ=255) ACACGACCAGAAGTCGCATTATTTCTGGTCGTGTCGTGCGAATCATAAGCAGTTGAGTGATCTACATc < 1:1629725‑M1/68‑1 (MQ=255) ACACGACCAGAAGTCGCATTATTTCTGGTCGTGTCGTGCGAATCATAAGCAGTTGAGTGATCTACATc < 1:11304506‑M1/68‑1 (MQ=255) ACACGACCAGAAGTCGCATTATTTCTGGTCGTGTCGTGCGAATCATAAGCAGTTGAGTGATCTACATc < 1:9819457‑M1/68‑1 (MQ=255) ACACGACCAGAAGTCGCATTATTTCTGGTCGTGTCGTGCGAATCATAAGCAGTTGAGTGATCTACATc < 1:5451622‑M1/68‑1 (MQ=255) ACACGACCAGAAGTCGCATTATTTCTGGTCGTGTCGTGCGAATCATAAGCAGTTGAGTGATCTACATc < 1:2163945‑M1/68‑1 (MQ=255) ACACGACCAGAAGTCGCATTATTTCTGGTCGTGTCGTGCGAATCATAAGCAGTTGAGTGATCTACATc < 1:23766419‑M1/68‑1 (MQ=255) ACACGACCAGAAGTCGCATTATTTCTGGTCGTGTCGTGCGAATCATAAGCAGTTGAGTGATCTACATc < 1:355988‑M1/68‑1 (MQ=255) ACACGACCAGAAGTCGCATTATTTCTGGTCGTGTCGTGCGAATCATAAGCAGTTGAGTGATCTACATc < 1:10649930‑M1/68‑1 (MQ=255) ACACGACCAGAAGTCGCATTATTTCTGGTCGTGTCGTGCGAATCATAAGCAGTTGAGTGATCTACATc < 1:26648738‑M1/68‑1 (MQ=255) ACACGACCAGAAGTCGCATTATTTCTGGTCGTGTCGTGCGAATCATAAGCAGTTGAGTGATCTACATc < 1:27672694‑M1/68‑1 (MQ=255) cacGACCAGAAataatgcgacttctggtcgtgtgttatgcattacatcgcgttcagacgtttttgtg < 1:15055114‑M1/67‑57 (MQ=255) aCCAGAAataatgcgacttctggtcgtgtgttatgcattacctcgcgttcagacgtttttgtgcctgt > 1:3634653‑M1/1‑7 (MQ=255) aCCAGAAataatgcgacttctggtcgtgtgttatgcattacatcgcgttcagacgtttttgtgcctgt > 1:22067005‑M1/1‑7 (MQ=255) aCCAGAAataatgcgacttctggtcgtgtgttatgcattacatcgcgttcagacgtttttgtgcctgt > 1:23433972‑M1/1‑7 (MQ=255) ACCAGAAGTCGCATTATTTCTGGTCGTGTCGTGCGAATCATAAGCAGTTGAGTGATCTACATCGAAAt < 1:19401845‑M1/68‑1 (MQ=255) ACCAGAAGTCGCATTATTTCTGGTCGTGTCGTGCGAATCATAAGCAGTTGAGTGATCTACATCGAAAt < 1:17161173‑M1/68‑1 (MQ=255) ACCAGAAGTCGCATTATTTCTGGTCGTGTCGTGCGAATCATAAGCAGTTGAGTGATCTACATCGAAAt < 1:2634582‑M1/68‑1 (MQ=255) ACCAGAAGTCGCATTATTTCTGGTCGTGTAGTGCGAATCATAAGCAGTTGAGTGATCTACATCGAAAt < 1:4195498‑M1/68‑1 (MQ=255) CCAGAAGTCGCATTATTTCTGGTCGTGTCGTGCGAATCATAAGCAGTTGAGTGATCTACATCGAAAtt < 1:9135549‑M1/68‑1 (MQ=255) | GGTACTGATGGCGCTAAACAGGCACAAAAACGTCTGAACGCGATGTAATGCATAACACACGACCAGAAGTCGCATTATTTCTGGTCGTGTCGTGCGAATCATAAGCAGTTGAGTGATCTACATCGAAATTTTTGT > CP009273/775798‑775932 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |