| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 775865 | 448 (1.010) | 24 (0.070) | 9/88 | NT | 6.3% | intergenic (+20/‑145) | ybgF/lysT | periplasmic TolA‑binding protein/tRNA‑Lys |
| ? | CP009273 | = 775875 | 362 (1.040) | intergenic (+30/‑135) | ybgF/lysT | periplasmic TolA‑binding protein/tRNA‑Lys | |||||
Only 100 of 727 total aligned reads displayed.
CGCTAAACAGGCACAAAAACGTCTGAACGCGATGTAATGCATAACACACGACCAGAAGTCGCATTATTTCTGGTCGTGTCGTGCGAATCATAAGCAGTTGAGTGATCTACATCGAAATTTTTGTTGCGCTCAAG > CP009273/775809‑775942 | cgcTAAACAGGCACAAAAACGTCTGAACGCGATGTAATGCATAACACACGACCAGAAGTCGCattat < 1:10727199/67‑1 (MQ=255)cgcTAAACAGGCACAAAAACGTCTGAACGCGATGTAATGCATAACACACGACCAGAAGTCGCattat < 1:8229321/67‑1 (MQ=255)cgcTAAACAGGCACAAAAACGTCTGAACGCGATGTAATGCATAACACACGACCAGAAGTCGCattat < 1:70232/67‑1 (MQ=255) cTAAACAGGCACAAAAACGTCTGAACGCGATGTAATGCATAACACACGACCAGAAGTCGCATTATt < 1:24060211‑M2/66‑2 (MQ=255) cacaAAAACGTCTGAACGCGATGTAATGCATAACACACGACCAGAAGTCGCATTATttctggtcgtg < 1:12715549‑M2/67‑12 (MQ=255) acaAAAACGTCTGAACGCGATGTAATGCATAACACACGACCAGAAGTCGCATTATttctggtcgtgt > 1:4358243‑M2/1‑55 (MQ=255) caAAAACGTCTGAACGCGATGTAATGCATAACACACGACCAGAAGTCGCATTATttctggtcgtgtgt > 1:25924489‑M2/1‑54 (MQ=255) caAAAACGTCTGAACGCGATGTAATGCATAACACACGACCAGAAGTCGCATTATttctggtcgtgtgt > 1:2159532‑M2/1‑54 (MQ=255) aaaaaCGTCTGAACGCGATGTAATGCATAACACACGACCAGAAGTCGCATTATTTCTGgtcgtgtcgt < 1:11630504/68‑1 (MQ=255) aaaaaCGTCTGAACGCGATGTAATGCATAACACACGACCAGAAGTCGCATTATTTCTGgtcgtgtcgt < 1:13885034/68‑1 (MQ=255) aaaCGTCTGAACGCGATGTAATGCATAACACACGACCAGAAGTCGCATTATttctggtcgtgtgttat > 1:23268318‑M2/1‑51 (MQ=255) aaaCGTCTGAACGCGATGTAATGCATAACACACGACCAGAAGTCGCATTATttctggtcgtgtgttat > 1:5575504‑M2/1‑51 (MQ=255) aaCGTCTGAACGCGATGTAATGCATAACACACGACCAGAAGTCGCATTATTTCTGGTCGTGTCGTGCg > 1:34338831/1‑68 (MQ=255) aaCGTCTGAACGCGATGTAATGCATAACACACGACCAGAAGTCGCATTATTTCTGGTCGTGTCGTGCg > 1:15331479/1‑68 (MQ=255) aCGTCTGAACGCGATGTAATGCATAACACACGACCAGAAGTCGCATTATttctggtcgtgtgttatgc > 1:24485712‑M2/1‑49 (MQ=255) aCGTCTGAACGCGATGTAATGCATAACACACGACCAGAAGTCGCATTATttctggtcgtgtgttatgc > 1:27857216‑M2/1‑49 (MQ=255) gTCTGAACGCGATGTAATGCATAACACACGACCAGAAGTCGCATTATttctggtcgtgtgttatgcat > 1:9151842‑M2/1‑47 (MQ=255) gTCTGAACGCGATGTAATGCATAACACACGACCAGAAGTCGCATTATTTCTGGTCGTGTCGTGCGAAt < 1:31518048/68‑1 (MQ=255) cTGAACGCGATGTAATGCATAACACACGACCCGAAGTCGGATTATTTCTGGTCGTGTCGTGCGAATCa < 1:1612455/68‑1 (MQ=255) cTGAACGCGATGTAATGCATAACACACGACCAGAAGTCGCATTATTTCTGGTCGTGTCGTGCGAATCa > 1:28113280/1‑68 (MQ=255) cTGAACGCGATGTAATGCATAACACACGACCAGAAGTCGCATTATTTCTGGTCGTGTCGTGCGAATCa < 1:12330866/68‑1 (MQ=255) tcaactgcttatgattcgcacgACACGACCAGAAGTCGCATTATTTCTGGTCGTGTCGTGCGAATCAt < 1:17130244‑M1/46‑1 (MQ=255) ccgcgaGGTAATGCATAACACCCGCCCAGAAGTCGCATTATttctgggcgtgtgttatgcattacat > 1:33098114‑M2/2‑41 (MQ=255) actgcttatgattcgcacgACACGACCAGAAGTCGCATTATTTCTGGTCGTGTCGTGCGAATCATaa < 1:3699136‑M1/48‑1 (MQ=255) aCGCGATGTAATGCATAACACACGACCAGAAGTCGCATTATTTCTGGTCGTGTCGTGCGAATCATaa > 1:36454215/1‑67 (MQ=255) gcgATGTAATGCATAACACACGACCAGAAGTCGCATTATttctggtcgtgtgttatgcattacatcgc > 1:36213487‑M2/1‑39 (MQ=255) gATGTAATGCATAACACACGACCAGAAGTCGCATTATTTCTGGTCGTGTCGTGCGAATCATAAGCAg < 1:33797709/67‑1 (MQ=255) gATGTAATGCATAACACACGACCAGAAGTCGCATTATTTCTGGTCGTGTCGTGCGAATCATAAGCAGt < 1:18691425/68‑1 (MQ=255) gATGTAATGCATAACACACGACCAGAAGTCGCATTATTTCTGGTCGTGTCGTGCGAATCATAAGCAGt < 1:19001059/68‑1 (MQ=255) gATGTAATGCATAACACACGACCAGAAGTCGCATTATTTCTGGTCGTGTCGTGCGAATCATAAGCAGt < 1:13335601/68‑1 (MQ=255) gATGTAATGCATAACACACGACCAGAAGTCGCATTATTTCTGGTCGTGTCGTGCGAATCATAAGCAGt < 1:26285375/68‑1 (MQ=255) aaTGCATAACACACGACCAGAAGTCGCATTATTTCTGGTCGTGTCGTGCGAATCATAAGCAGTTGAGt < 1:9551048/68‑1 (MQ=255) aaTGCATAACACACGACCAGAAGTCGCATTATTTCTGGTCGTGTCGTGCGAATCATAAGCAGTTGAGt < 1:28319891/68‑1 (MQ=255) tGCATAACACACGACCAGAAGTCGCATTATTTCTGGTCGTGTCGTGCGAATCATAAGCAGTTGAGTGa < 1:22735787/68‑1 (MQ=255) gCATAACACACGACCAGAAGTCGCATTATTTCTGGTCGTGTCGTGCGAATCGTAAGCAGTTGAGTGa > 1:31813310/1‑67 (MQ=255) gCATAACACACGACCAGAAGTCGCATTATTTCTGGTCGTGTCGTGCGAATCATAAGCAGTTGAGTGa > 1:10004702/1‑67 (MQ=255) gCATAACACACGACCAGAAGTCGCATTATTTCTGGTCGTGTCGTGCGAATCATAAGCAGTTGAGTGa > 1:23951766/1‑67 (MQ=255) gCATAACACACGACCAGAAGTCGCATTATTTCTGGTCGTGTCGTGCGAATCATAAGCAGTTGAGTGa > 1:11354989/1‑67 (MQ=255) gCATAACACACGACCAGAAGTCGCATTATTTCTGGTCGTGTCGTGCGAATCATAAGCAGTTGAGTGa > 1:8908996/1‑67 (MQ=255) gCATAACACACGACCAGAAGTCGCATTATTTCTGGTCGTGTCGTGCGAATCATAAGCAGTTGAGTGa > 1:5087926/1‑67 (MQ=255) gCATAACACACGACCAGAAGTCGCATTATTTCTGGTCGTGTCGTGCGAATCATAAGCAGTTGAGTGa > 1:20449259/1‑67 (MQ=255) gCATAACACACGACCAGAAGTCGCATTATTTCTGGTCGTGTCGTGCGAATCATAAGCAGTTGAGTGa > 1:32076819/1‑67 (MQ=255) aTAACACACGACCAGAAGTCGCATTATTTCTGGTCGTGTCGTGCGAATCATAAGCAGTTGAGTGATCt > 1:10505697/1‑68 (MQ=255) aTAACACACGACCAGAAGTCGCATTATTTCTGGTCGTGTCGTGCGAATCATAAGCAGTTGAGTGATCt > 1:25683120/1‑68 (MQ=255) aTAACACACGACCAGAAGTCGCATTATTTCTGGTCGTGTCGTGCGAATCATAAGCAGTTGAGTGATCt > 1:29837445/1‑68 (MQ=255) aTAACACACGACCAGAAGTCGCATTATTTCTGGTCGTGTCGTGCGAATCATAAGCAGTTGAGTGATCt > 1:21273937/1‑68 (MQ=255) aTAACACACGACCAGAAGTCGCATTATTTCTGGTCGTGTCGTGCGAATCATAAGCAGTTGAGTGATCt > 1:14556137/1‑68 (MQ=255) aTAACACACGACCAGAAGTCGCATTATTTCTGGTCGTGTCGTGCGAATCATAAGCAGTTGAGTGATCt > 1:22027508/1‑68 (MQ=255) aaCACACGACCAGAAGTCGCATTATTTCTGGTCGTGTCGTGCGAATCATAAGCAGTTGAGTGATCTAc < 1:7537472/68‑1 (MQ=255) aaCACACGACCAGAAGTCGCATTATTTCTGGTCGTGTCGTGCGAATCATAAGCAGTTGAGTGATCTAc > 1:13536999/1‑68 (MQ=255) acacacGACCAGAAGTCGCATTATTTCTGGTCGTGTCGTGCGAATCATAAGCAGTTGAGTGATCTACa > 1:12970335/1‑68 (MQ=255) acacacGACCAGAAGTCGCATTATTTCTGGTCGTGTCGTGCGAATCATAAGCAGTTGAGTGATCTACa > 1:15871479/1‑68 (MQ=255) acacacGACCAGAAGTCGCATTATTTCTGGTCGTGTCGTGCGAATCATAAGCAGTTGAGTGATCTACa > 1:16700606/1‑68 (MQ=255) acacacGACCAGAAGTCGCATTATTTCTGGTCGTGTCGTGCGAATCATAAGCAGTTGAGTGATCTACa > 1:17465196/1‑68 (MQ=255) acacacGACCAGAAGTCGCATTATTTCTGGTCGTGTCGTGCGAATCATAAGCAGTTGAGTGATCTACa > 1:3589203/1‑68 (MQ=255) acacacGACCAGAAGTCGCATTATTTCTGGTCGTGTCGTGCGAATCATAAGCAGTTGAGTGATCTACa > 1:1782527/1‑68 (MQ=255) cacacGACCAGAAGTCGCATTATTTCTGGTCGTGTCGTGCGAATCATAAGCAGTTGAGTGATCTACa > 1:26643822/1‑67 (MQ=255) ACACGACCAGAAGTCGCATTATTTCTGGTCGTGTCGTGCGAATCATAAGCAGTTGAGTGATCTacaac < 1:35602191‑M1/68‑3 (MQ=255) ACACGACCAGAAGTCGCATTATTTCTGGTCGTGTCGTGCGAATCATAAGCAGTTGAGTGATCTACATc < 1:3870472‑M1/68‑1 (MQ=255) ACACGACCAGAAGTCGCATTATTTCTGGTCGTGTCGTGCGAATCATAAGCAGTTGAGTGATCTACATc < 1:5451622‑M1/68‑1 (MQ=255) ACACGACCAGAAGTCGCATTATTTCTGGTCGTGTCGTGCGAATCATAAGCAGTTGAGTGATCTACATc < 1:5732071‑M1/68‑1 (MQ=255) ACACGACCAGAAGTCGCATTATTTCTGGTCGTGTCGTGCGAATCATAAGCAGTTGAGTGATCTACATc < 1:17240284‑M1/68‑1 (MQ=255) ACACGACCAGAAGTCGCATTATTTCTGGTCGTGTCGTGCGAATCATAAGCAGTTGAGTGATCTACATc < 1:24162437‑M1/68‑1 (MQ=255) ACACGACCAGAAGTCGCATTATTTCTGGTCGTGTCGTGCGAATCATAAGCAGTTGAGTGATCTACATc < 1:33517055‑M1/68‑1 (MQ=255) ACACGACCAGAAGTCGCATTATTTCTGGTCGTGTCGTGCGAATCATAAGCAGTTGAGTGATCTACATc < 1:19395005‑M1/68‑1 (MQ=255) ACACGACCAGAAGTCGCATTATTTCTGGTCGTGTCGTGCGAATCATAAGCAGTTGAGTGATCTACATc < 1:3256876‑M1/68‑1 (MQ=255) ACACGACCAGAAGTCGCATTATTTCTGGTCGTGTCGTGCGAATCATAAGCAGTTGAGTGATCTACATc < 1:20005650‑M1/68‑1 (MQ=255) ACACGACCAGAAGTCGCATTATTTCTGGTCGTGTCGTGCGAATCATAAGCAGTTGAGTGATCTACATc < 1:2022328‑M1/68‑1 (MQ=255) ACACGACCAGAAGTCGCATTATTTCTGGTCGTGTCGTGCGAATCATAAGCAGTTGAGTGATCTACATc < 1:31280920‑M1/68‑1 (MQ=255) ACACGACCAGAAGTCGCATTATTTCTGGTCGTGTCGTGCGAATCATAAGCAGTTGAGTGATCTACATc < 1:23766419‑M1/68‑1 (MQ=255) ACACGACCAGAAGTCGCATTATTTCTGGTCGTGTCGTGCGAATCATAAGCAGTTGAGTGATCTACATc < 1:26970067‑M1/68‑1 (MQ=255) ACACGACCAGAAGTCGCATTATTTCTGGTCGTGTCGTGCGAATCATAAGCAGTTGAGTGATCTACATc < 1:20766202‑M1/68‑1 (MQ=255) ACACGACCAGAAGTCGCATTATTTCTGGTCGTGTCGTGCGAATCATAAGCAGTTGAGTGATCTACATc < 1:29370691‑M1/68‑1 (MQ=255) CACGACCAGAAGTCGCATTATTTCTGGTCGTGTCGTGCGAATCATAAGCAGTTGAGTGATCTACATCg < 1:34049497‑M1/68‑1 (MQ=255) CGACCAGAAGTCGCATTATTTCTGGTCGTGTCGTGCGAATCATAAGCAGTTGAGTGATCTACATCGaa < 1:23525034‑M1/68‑1 (MQ=255) ACCAGAAGTCGCATTATTTCTGGTCGTGTCGTGCGAATCATAAGCAGTTGAGTGATCTACATCGAAAt < 1:28772752‑M1/68‑1 (MQ=255) ACCAGAAGTCGCATTATTTCTGGTCGTGTCGTGCGAATCATAAGCAGTTGAGTGATCTACATCGAAAt < 1:6570326‑M1/68‑1 (MQ=255) ACCAGAAGTCGCATTATTTCTGGTCGTGTCGTGCGAATCATAAGCAGTTGAGTGATCTACATCGAAAt < 1:29021164‑M1/68‑1 (MQ=255) ACCAGAAGTCGCATTATTTCTGGTCGTGTCGTGCGAATCATAAGCAGTTGAGTGATCTACATCGAAAt < 1:34578464‑M1/68‑1 (MQ=255) CCAGAAGTCGCATTATTTCTGGTCGTGTCGTGCGAATCATAAGCAGTTGAGTGATCTACATCGAAAtt < 1:35190479‑M1/68‑1 (MQ=255) CCAGAAGTCGCATTATTTCTGGTCGTGTCGTGCGAATCATAAGCAGTTGAGTGATCTACATCGAAAtt < 1:3491152‑M1/68‑1 (MQ=255) CCAGAAGTCGCATTATTTCTGGTCGTGTCGTGCGAATCATAAGCAGTTGAGTGATCTACATCGAAAtt < 1:30116546‑M1/68‑1 (MQ=255) AAGTCGCATTATTTCTGGTCGTGTCGTGCGAATCATAAGCAGTTGAGTGATCTACATCGAAATTTTTg < 1:14902950‑M1/68‑1 (MQ=255) AAGTCGCATTATTTCTGGTCGTGTCGTGCGAATCATAAGCAGTTGAGTGATCTACATCGAAATTTTTg < 1:25183873‑M1/68‑1 (MQ=255) gTCGCATTATTTCTGGTCGTGTCGTGCGAATCATAAGCAGTTGAGTGATCTACATCGAAATTTttgtt > 1:13126107/1‑68 (MQ=255) gTCGCATTATTTCTGGTCGTGTCGTGCGAATCATAAGCAGTTGAGTGATCTACATCGAAATTTttgtt > 1:7969142/1‑68 (MQ=255) gTCGCATTATTTCTGGTCGTGTCGTGCGAATCATAAGCAGTTGAGTGATCTACATCGAAATTTttgtt > 1:18303296/1‑68 (MQ=255) gTCGCATTATTTCTGGTCGTGTCGTGCGAATCATAAGCAGTTGAGTGATCTACATCGAAATTTttgtt > 1:14270013/1‑68 (MQ=255) gTCGCATTATTTCTGGTCGTGTCGTGCGAATCATAAGCAGTTGAGTGATCTACATCGAAATTTttgtt > 1:7315782/1‑68 (MQ=255) cATTATTTCTGGTCGTGTCGTGCGAATCATAAGCAGTTGAGTGATCTACATCGAAATTTTTGTTgc > 1:8523066/1‑66 (MQ=255) tattTCTGGTCGTGTCGTGCGAATCATAAGCAGTTGAGTGATCTACATCGAAATTTTTGTTGCGCTCa < 1:19636960/68‑1 (MQ=255) attTCTGGTCGTGTCGTGCGAATCATAAGCAGTTGAGTGATCTACATCGAAATTTTTGTTGCGCTCaa > 1:9809460/1‑68 (MQ=255) tttCTGGTCGTGTCGTGCGAATCATAAGCAGTTGAGTGATCTACATCGAAATTTTTGTTGCGCTCAAg < 1:6083009/68‑1 (MQ=255) tttCTGGTCGTGTCGTGCGAATCATAAGCAGTTGAGTGATCTACATCGAAATTTTTGTTGCGCTCAAg < 1:4559292/68‑1 (MQ=255) tttCTGGTCGTGTCGTGCGAATCATAAGCAGTTGAGTGATCTACATCGAAATTTTTGTTGCGCTCAAg < 1:3066746/68‑1 (MQ=255) tttCTGGTCGTGTCGTGCGAATCATAAGCAGTTGAGTGATCTACATCGAAATTTTTGTTGCGCTCAAg < 1:22390769/68‑1 (MQ=255) tttCTGGTCGTGTCGTGCGAATCATAAGCAGTTGAGTGATCTACATCGAAATTTTTGTTGCGCTCAAg < 1:27341560/68‑1 (MQ=255) tttCTGGTCGTGTCGTGCGAATCATAAGCAGTTGAGTGATCTACATCGAAATTTTTGTTGCGCTCAAg < 1:22993445/68‑1 (MQ=255) tttCTGGTCGTGTCGTGCGAATCATAAGCAGTTGAGTGATCTACATCGAAATTTTTGTTGCGCTCAAg < 1:10989612/68‑1 (MQ=255) tttCTGGTCGTGTCGTGCGAATCATAAGCAGTTGAGTGATCTACATCGAAATTTTTGTTGCGCTCAAg < 1:24677188/68‑1 (MQ=255) | CGCTAAACAGGCACAAAAACGTCTGAACGCGATGTAATGCATAACACACGACCAGAAGTCGCATTATTTCTGGTCGTGTCGTGCGAATCATAAGCAGTTGAGTGATCTACATCGAAATTTTTGTTGCGCTCAAG > CP009273/775809‑775942 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |