| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 776085 | NA (NA) | 67 (0.160) +GTT |
4/106 | NT | 11.7% | noncoding (76/76 nt) | lysT | tRNA‑Lys |
| ? | CP009273 | = 776400 | 536 (1.200) | intergenic (+26/‑124) | lysW/valZ | tRNA‑Lys/tRNA‑Val | |||||
Only 100 of 467 total aligned reads displayed.
TCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAACGTTGCATGAGCAACGGCCCGAAGGGCGA > CP009273/776021‑776153 | tCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATc < 1:35639616/68‑1 (MQ=31)tCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATc < 1:26376339/68‑1 (MQ=31)tCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATc > 1:25407523/1‑68 (MQ=31)tCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATc < 1:34374362/68‑1 (MQ=31) cAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCg < 1:9131923/68‑1 (MQ=33) gTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCt > 1:28571667/1‑68 (MQ=37) ttGGTAGAGCAGTTGACTTTTAATCAATTCGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTa > 1:29308342/1‑68 (MQ=255) ggTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAg > 1:21365724/1‑68 (MQ=255) gTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAgg > 1:12630618/1‑68 (MQ=255) tAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCTATAAgga > 1:19976276/1‑67 (MQ=11) tAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAgg < 1:5345582/67‑1 (MQ=255) tAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAgg < 1:22664478/67‑1 (MQ=255) tAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAgg < 1:12327166/67‑1 (MQ=255) tAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAgg < 1:29069402/67‑1 (MQ=255) tAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGt > 1:24860847/1‑68 (MQ=255) tAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATAGATAAGGt > 1:14110464/1‑68 (MQ=255) agagCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTg < 1:10213674/68‑1 (MQ=255) gagCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTgg > 1:22956445/1‑68 (MQ=255) gCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGaa > 1:1985967/1‑68 (MQ=255) gCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGaa > 1:13383996/1‑68 (MQ=255) cAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGaa > 1:4197769/1‑67 (MQ=255) cAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGaa > 1:895518/1‑67 (MQ=255) aGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGaa < 1:1123708/66‑1 (MQ=255) tGACTTTTAATCAATTGTTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGgt < 1:2442671/68‑1 (MQ=255) tGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCg < 1:2011639/66‑1 (MQ=255) tGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCg < 1:6677132/66‑1 (MQ=255) tGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCg < 1:20404750/66‑1 (MQ=255) tGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCg < 1:27859637/66‑1 (MQ=255) tGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCg < 1:3802194/66‑1 (MQ=255) tGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGgt < 1:11626986/68‑1 (MQ=255) tGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGgt < 1:11321832/68‑1 (MQ=255) tGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGgt < 1:30673910/68‑1 (MQ=255) tGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGgt < 1:30292407/68‑1 (MQ=255) tGACTATTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGgt < 1:6885394/68‑1 (MQ=255) tGACTATTAATCAATTGGGCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGgt < 1:18091559/68‑1 (MQ=255) gACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGgta < 1:1514357/68‑1 (MQ=255) gACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGgta > 1:5624617/1‑68 (MQ=255) cTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGgtagt < 1:20234381/68‑1 (MQ=255) tAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGGTAGTaaaa < 1:33583284/68‑1 (MQ=255) aTCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACg < 1:3088562/68‑1 (MQ=255) aTCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACg < 1:13222572/68‑1 (MQ=255) tCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTCTGTAAGGTGGAAGCTGATGTAAAACGt > 1:18410903/1‑68 (MQ=17) tCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCTATAAGGTGGAGGCGGTAGTAAAACGt > 1:3257602/1‑68 (MQ=18) tCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGt < 1:1765346/68‑1 (MQ=255) tCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGt > 1:33378862/1‑68 (MQ=255) tCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGt < 1:3510204/68‑1 (MQ=255) aaTTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGTGa < 1:26843785/68‑1 (MQ=255) tGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCTTTAACGGGGAAGCGGTAGTAAAACGTGAAgg > 1:17233542/1‑68 (MQ=21) tGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAgg < 1:14745772/68‑1 (MQ=255) tGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAgg > 1:15385452/1‑68 (MQ=255) tGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAgg < 1:15848835/68‑1 (MQ=255) tGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAgg < 1:20504784/68‑1 (MQ=255) tGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAgg < 1:3214605/68‑1 (MQ=255) tGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAgg < 1:36042032/68‑1 (MQ=255) tGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAgg < 1:25285590/68‑1 (MQ=255) tGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAgg < 1:17957164/68‑1 (MQ=255) tGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAgg < 1:1908060/68‑1 (MQ=255) tGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAgg < 1:23692541/68‑1 (MQ=255) tCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGAt < 1:1071333/67‑1 (MQ=255) gCAGGTTCGAATCCTGCACGACCCACCACTATGAAAGGTGGAAGCGGTAGTAAACCGTGAAGGATAAc > 1:21530096/1‑68 (MQ=21) gCAGGTTCGAATCCTGCACGACCCACCAATCTATAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAAc > 1:25764907/1‑68 (MQ=255) gCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAAc < 1:27443013/68‑1 (MQ=255) gCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAAc > 1:36665445/1‑68 (MQ=255) gCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAAc < 1:18677203/68‑1 (MQ=255) aGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAACg < 1:10464386/67‑1 (MQ=255) aGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAACg < 1:27097663/67‑1 (MQ=255) aGGGTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAACACGTGAAGGATAACg < 1:7560506/67‑1 (MQ=255) tgTTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAACGtt < 1:16019542/67‑1 (MQ=255) ggTTCGAATCCTGCACGACCCACCATTCGGTAATGTGGAAGCGGTAGTAAAACGTGAAGGATAACGtt > 1:23962312/1‑68 (MQ=37) ggTTCGAATCCTGCACGACCCACCAATGTATAAGGTGGAAGCGGTAGTTAAACGTGTAGGATAACGtt > 1:7819486/1‑68 (MQ=21) ggTTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAACGtt > 1:12138351/1‑68 (MQ=255) ggTTCGAATCCTGCACGACACACAAATAGCGATGTAGGAAGCGGGAGTAAAACGGGAAGGATAACGtt > 1:6194974/1‑68 (MQ=19) ttCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAACGtt < 1:9419672/66‑1 (MQ=255) ttCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAACGtt < 1:22222874/66‑1 (MQ=255) ttCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAACGTTg < 1:29566566/67‑1 (MQ=255) ttCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAACGTTg < 1:8779366/67‑1 (MQ=255) ttCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAACGTTg < 1:14394408/67‑1 (MQ=255) ttCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAACGTTg < 1:29998644/67‑1 (MQ=255) tCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAACGTTGc < 1:2344964/67‑1 (MQ=255) tCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAACGTTGc < 1:4630073/67‑1 (MQ=255) tCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAACGTTGCa < 1:13492597/68‑1 (MQ=255) aTCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAACGTTGCATGa < 1:3736042/67‑1 (MQ=255) tCCTGCACGACCCACCAATCGGTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAACGTTGCTTGAGc > 1:13866673/1‑68 (MQ=255) ccTGCACGACCCACCAATAGAAAAGTTGGAAGCGGTAGTAAAACGTGAAGGATAACGTTGCATCAGCa > 1:22001566/1‑68 (MQ=21) cACGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAACGTTGCATGAGCAACg > 1:20817606/1‑67 (MQ=255) aCGACCCACCTATGGCTAAGGTGGTAGCGGTAGTAATACGTGAAGGATAACGTTGCATGAGCAACgg < 1:32307728/67‑1 (MQ=37) aCGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAACGTTGCATGGGCAACgg > 1:34635923/1‑67 (MQ=255) aCGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAACGTTGCATGAGCAACgg < 1:34122623/67‑1 (MQ=255) aCGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAACGTTGCATGAGCAACgg > 1:31727532/1‑67 (MQ=255) aCGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAACGTTGCATGAGCAACGGc < 1:11128880/68‑1 (MQ=255) ccaccaATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAACGTTGCATGAGCAACGGCCCGaa > 1:28152145/1‑68 (MQ=255) accaATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAACGTTGCATGAGCAACGGCCCGAAgg < 1:8358861/68‑1 (MQ=255) ccaATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAACGTTGCATGAGCAACGGCCCGAAggg < 1:16515837/68‑1 (MQ=255) aaTCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAACGTTGCATGAGCAACGGCCCGAAGGGCg > 1:16690087/1‑68 (MQ=255) aaTCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAACGTTGCATGAGCAACGGCCCGAAGGGCg > 1:17042842/1‑68 (MQ=255) aaTCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAACGTTGCATGAGCAACGGCCCGAAGGGCg > 1:13092601/1‑68 (MQ=255) aaTCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAACGTTGCATGAGCAACGGCCCGAAGGGCg > 1:31313784/1‑68 (MQ=255) aaTCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAACGTTGCATGAGCAACGGCCCGAAGGGCg > 1:28818342/1‑68 (MQ=255) aaTCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAACGTTGCATGAGCAACGGCCCGAAGGGCg > 1:1963551/1‑68 (MQ=255) aaTCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAACG‑TGCATGAGCAACGGCCCGAAGGGCga > 1:34771930/1‑68 (MQ=255) | TCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAGCGGTAGTAAAACGTGAAGGATAACGTTGCATGAGCAACGGCCCGAAGGGCGA > CP009273/776021‑776153 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |