| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 776085 | NA (NA) | 67 (0.160) +GTT |
4/106 | NT | 11.7% | noncoding (76/76 nt) | lysT | tRNA‑Lys |
| ? | CP009273 | = 776400 | 536 (1.200) | intergenic (+26/‑124) | lysW/valZ | tRNA‑Lys/tRNA‑Val | |||||
Only 100 of 866 total aligned reads displayed.
TTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCGAAGACAGATGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACC > CP009273/776333‑776467 | aaTCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCGAAGACAGATGTTAAGc < 1:5580351/68‑1 (MQ=255) aaTCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCGAAGACAGATGTTAAGc < 1:12165005/68‑1 (MQ=255) aaTCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCGAAGACAGATGTTAAGc < 1:29708428/68‑1 (MQ=255) aaTCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCGAAGACAGATGTTAAGc < 1:13600029/68‑1 (MQ=255) aTCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCAAAGACAGATGTTAAGCg > 1:27539443/1‑68 (MQ=25) tCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCGAAGACAGATGTTAAGCgt < 1:22528426/68‑1 (MQ=255) tCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCGAAGACAGATGTTAAGCgt < 1:24470666/68‑1 (MQ=255) tCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCGAAGACAGATGTTAAGCgt < 1:26191487/68‑1 (MQ=255) tCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCGAAGACAGATGTTAAGCgt < 1:4841726/68‑1 (MQ=255) tCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCGAAGACAGATGTTAAGCgt < 1:15935548/68‑1 (MQ=255) tCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCGAAGACAGATGTTAAGCgt > 1:31997041/1‑68 (MQ=255) tCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCGAAGACAGATGTTAAGCgt < 1:9135238/68‑1 (MQ=255) tCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCGAAGACAGATGTTAAGCgt > 1:35789283/1‑68 (MQ=255) tCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCGAAGACAGATGTTAAGCgt < 1:35277923/68‑1 (MQ=255) aTTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCGAAGACAGATGTTAAGCGTGTa < 1:18636608/68‑1 (MQ=255) tGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCGAAGACAGATGTTAAGCGTGTaag > 1:6431071/1‑66 (MQ=255) tGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCGAAGACAGATGTTAAGCGTGTAgg < 1:81723/68‑1 (MQ=255) tGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCGAAGACAGATGTTAAGCGTGTAgg < 1:14533941/68‑1 (MQ=255) tGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCGAAGACAGATGTTAAGCGTGTAgg < 1:30433575/68‑1 (MQ=255) tGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCGAAGACAGATGTTAAGCGTGTAgg < 1:151232/68‑1 (MQ=255) tCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCGAAGACAGATGTTAAGCGTGTAGGATa > 1:17754463/1‑68 (MQ=255) cGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCGAAGACAGATGTTAAGCGTGTAGGATaa < 1:512530/68‑1 (MQ=255) gCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCGAAGACAGATGTTAAGCGTGTAGGATAAc < 1:17342253/68‑1 (MQ=255) aTCCTGCACGCCCCACCAGTTTTAAAATCGAAGACAGATGTTAAGCGTGTAGGATAACGTTGCGTCAg > 1:857501/1‑68 (MQ=255) tCCTGCACGACCCACCAGTTTTAACATCGAAGACAGATGTTAAGCGTGTAGGATAACGTTGCGTCAGc > 1:22784788/1‑68 (MQ=255) tCCTGCACGACCCACCAGTTTTAACATCGAAGACAGATGTTAAGCGTGTAGGATAACGTTGCGTCAGc < 1:28828655/68‑1 (MQ=255) cACGACCCACCAGTTTTAACATCGAAGACAGATGTTAAGCGGGTAGGATAACGTTGCGTCAGCAACg > 1:25314342/1‑67 (MQ=255) aCGACCCACCAGTTTTAACATCGAAGACAGATGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACgg > 1:24024643/1‑67 (MQ=255) aCGACCCACCAGTTTTAACATCGAAGACAGATGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGc < 1:3006858/68‑1 (MQ=255) aCGACCCACCAGTTTTAACATCGAAGACAGATGTTAAGCGTGTAGGATAACGTTGCGACAGCAACgg > 1:37013832/1‑67 (MQ=255) aCGACCCACCAGTTTTAACATCGAAGACAGATGTTAAGCGTGAAGGATAACGTTGCGTCAGCAACgg > 1:20990311/1‑67 (MQ=255) cGACCCACCAGTTTTAACATCTAAGACAGATGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGcc < 1:30984946/68‑1 (MQ=255) cGACCCACCAGTTTTAACATCGAAGACAGATGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGcc < 1:10472856/68‑1 (MQ=255) cGACCCACCAGTTTTAACATCGAAGACAGATGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGcc < 1:36498315/68‑1 (MQ=255) cGACCCACCAGTTTTAACATCGAAGACAGATGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGcc < 1:35530136/68‑1 (MQ=255) cGACCCACCAGTTTTAACATCGAAGACAGATGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGcc < 1:27977414/68‑1 (MQ=255) cGACCCACCAGTTTTAACATCGAAGACAGATGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGcc < 1:30853934/68‑1 (MQ=255) cGACCCACCAGTTTTAACATCGAAGACAGATGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGcc < 1:18126508/68‑1 (MQ=255) aGTTTTAACATCGAAGACAGATGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGgcg > 1:6817001/1‑68 (MQ=255) aGTTTTAACATCGAAGACAGATGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGgcg > 1:27845367/1‑68 (MQ=255) tttAACATCGAAGACAGATGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGgcgag < 1:3301362/67‑1 (MQ=255) tttAACATCGAAGACAGATGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGgcgag < 1:19362234/67‑1 (MQ=255) tAACATCGAAGACAGATGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGgcgagcga > 1:33913893/1‑68 (MQ=255) cATCGAAGACAGATGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGagcgaagc > 1:132635/1‑68 (MQ=255) cATCGAAGACAGATGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGagcgaagc > 1:14815999/1‑68 (MQ=255) cATCGAAGACAGATGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGagcgaagc > 1:34809136/1‑68 (MQ=255) cATCGAAGACAGATGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGagcgaagc > 1:36791414/1‑68 (MQ=255) aTCGAAGACAGATGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGagcgaagcg > 1:34127213/1‑68 (MQ=255) tCGAAGCCAGATGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGagcgaagcga < 1:31510436/68‑1 (MQ=255) tCGAAGACAGATGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGagcgaagcga < 1:21909023/68‑1 (MQ=255) gACAGATGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCa > 1:20466098/1‑67 (MQ=255) cccAGATGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCAt < 1:13035541/66‑1 (MQ=255) aCAGATGTTAAGCGTGTAGGATAACGTTGCGTAAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCAt > 1:7192736/1‑67 (MQ=255) tagATGTTAAaactggtgggtcgtgcaggattcgaacctgcgaccaattgattaaaagtcaactgctc > 1:14019818‑M2/2‑10 (MQ=255) cggatTTTAAaactggtgggtcgtgcaggattcgaacctgcgaccaattgattaaaagtcaactgc > 1:25742281‑M2/3‑10 (MQ=255) cAGATGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGAGCCAAGGGAGTCAt > 1:36130207/1‑66 (MQ=255) tatGTTAAtactggtgggtcgtgcaggattcgaacctgcgaccaattgattaaaagtcaactgctcta > 1:15757076‑M2/2‑8 (MQ=255) gATGTTAAaactggtgggtcgtgcaggattcgaacctgcgaccaattgattaaaagtcaactgctcta > 1:24993653‑M2/1‑8 (MQ=255) gATGTTAAaactggtgggtcgtgcaggattcgaacctgcgaccaattgattaaaagtcaactgctcta > 1:5921094‑M2/1‑8 (MQ=255) gATGTTAAaactggtgggtcgtgcaggattcgaacctgcgaccaattgattaaaagtcaactgctcta > 1:10989938‑M2/1‑8 (MQ=255) gATGTTAAaactggtgggtcgtgcaggattcgaacctgcgaccaattgattaaaagtcaactgctcta > 1:16271722‑M2/1‑8 (MQ=255) gATGTTAAaactggtgggtcgtgcaggattcgaacctgcgaccaattgattaaaagtcaactgctcta > 1:1660087‑M2/1‑8 (MQ=255) aTGTTAAaactggtgggtcgtgcaggattcgaacctgcgaccaattgattaaaagtcaactgctcta < 1:18951061‑M2/67‑61 (MQ=255) aTGTTAAaactggtgggtcgtgcaggattcgaacctgcgaccaattgattaaaagtcaactgctcta < 1:21264923‑M2/67‑61 (MQ=255) aTGTTAAaactggtgggtcgtgcaggattcgaacctgagaacaattgattaaaagtcaactgctata < 1:32421704‑M2/67‑61 (MQ=255) tGTTAAaactggtgggtcgtgcaggattcgaacctgcgaccaattgattaaaagtcaactgctctacc < 1:7699525‑M2/68‑63 (MQ=255) tGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCAt < 1:8396801/62‑1 (MQ=40) tGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCAt < 1:29578694/62‑1 (MQ=40) tGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCAt < 1:32714870/62‑1 (MQ=40) tGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCt < 1:31342449/65‑1 (MQ=40) tGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCt < 1:29313122/65‑1 (MQ=40) tGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCt < 1:3991173/65‑1 (MQ=40) tGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCt < 1:23643069/65‑1 (MQ=40) tGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCt < 1:23471553/65‑1 (MQ=40) tGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCt < 1:23065621/65‑1 (MQ=40) gTTAAaactggtgggtcgtgcaggattcgaacctgcgaccaattgattaaaagtcaactgctctacca > 1:15559134‑M2/1‑5 (MQ=255) gTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCAc > 1:12692817/1‑68 (MQ=40) gTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCAc > 1:6563670/1‑68 (MQ=40) ttAAaactggtgggtcgtgcaggattcgaacctgcgaccaattgattaaaagtcaactgctctaccaa > 1:8843925‑M2/1‑4 (MQ=255) tAAaaatggtgggtcgtgcaggattcgaacctgcgaccaattgattaaaagtcaactgctctaccaa > 1:27085762‑M2/1‑3 (MQ=255) tAAGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACg > 1:10684574/1‑67 (MQ=40) tAAGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACg > 1:11396750/1‑67 (MQ=40) aaaactggtgggtcgtgcaggattcgaacctgcgaccaattgat > 1:34454296‑M2/1‑2 (MQ=255) aaGCGTGTAGGATAACGTTGCGTCATCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGAc < 1:16849887/68‑1 (MQ=255) aaGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGa > 1:11987113/1‑67 (MQ=40) aaGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGAc < 1:10017966/68‑1 (MQ=40) aaGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGAc < 1:26628739/68‑1 (MQ=40) aaGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGAc < 1:13826486/68‑1 (MQ=40) aaGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGAc < 1:7334009/68‑1 (MQ=40) aaGCGTGTAGGATAACGTTGCGGCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGAc < 1:33564033/68‑1 (MQ=25) aaGCGTGTAGGAAAACGTTTCTGCATCAACGGCACGTAGGGCGAGCGAAGCGAGTCATCCTGCACGAc < 1:967260/68‑1 (MQ=11) aGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGAc > 1:20236906/1‑67 (MQ=40) aGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGAc > 1:21557151/1‑67 (MQ=40) aGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGAc > 1:22305093/1‑67 (MQ=40) aGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGAc > 1:1167305/1‑67 (MQ=40) aGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGAc > 1:28301335/1‑67 (MQ=40) aGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGAc > 1:4378159/1‑67 (MQ=40) aGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGAc > 1:29008673/1‑67 (MQ=40) aGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCAGCACGa > 1:17184200/1‑66 (MQ=255) aGCGTGTAGGATAACGTTCCGTAAGCAACGGCCCGTAGGGCGAGCTAAGCGAGTCATACTGCACGAc > 1:19823018/1‑67 (MQ=14) | TTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCGAAGACAGATGTTAAGCGTGTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACC > CP009273/776333‑776467 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |