| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 1242300 = | 945 (2.120) | 366 (0.870) | 54/106 | NT | 28.9% | coding (533/1698 nt) | treA | periplasmic trehalase |
| ? | CP009273 | = 1292972 | 906 (2.150) | coding (606/2676 nt) | adhE | fused acetaldehyde‑CoA dehydrogenase/iron‑dependent alcohol dehydrogenase/pyruvate‑formate lyase deactivase | |||||
Only 100 of 1710 total aligned reads displayed.
CTGCGGTTGCCGTTGGGAATATGACCGTAAGTGTCTATTTCATGAGCAAAATTGGCCACCATATCCGCGACTTTATCCCAGTGACCGCTTTCGGCAAGTCCTAACATGGTGAAGTAACTGTCCCAGTAATATAC > CP009273/1242234‑1242367 | ttcatcgataacaactggagtgttgcccgcgcctacaccgatagctggtttaccggagctgtatGCg < 1:8945982‑M1/3‑1 (MQ=255) ttcatcgataacaactggagtgttgcccgcgcctacaccgatagctggtttaccggagctgtatGCg < 1:3246003‑M1/3‑1 (MQ=255) ttcatcgataacaactggagtgttgcccgcgcctacaccgatagctggtttaccggagctgtatGCGa > 1:13771502‑M1/65‑68 (MQ=255) tcatcgataacaactggagtgttgcccgcgcctacaccgatagctggtttaccggagctgtatGCGAc > 1:33531618‑M1/64‑68 (MQ=255) ggTTGCCGTTGGGAATTTGACCGTAAGTGTCTATTTCATGAGCAAAATTGGCCACCATATCCGCGAc < 1:34814474/67‑1 (MQ=255) ggTTGCCGTTGGGAATATGACCGTAAGTGTCTATTTCATGAGCAAAATTGGCCACCATATCCGCGACt < 1:26329967/68‑1 (MQ=255) ggTTGCCGTTGGGAATATGACCGTAAGTGTCTATATCATGAGCAAAATTGGCCTCCATTTCCGCGagt > 1:21701402/1‑66 (MQ=38) tGCCGTTGGGAATATGACCGTAAGTGTCTATTTCATGAGCAAAATTGGCCACCATATCCGCGACttt < 1:3952032/67‑1 (MQ=255) tGCCGTTGGGAATATGACCGTAAGTGTCTATTTCATGAGCAAAATTGGCCACCATATCCGCGACttt < 1:7751220/67‑1 (MQ=255) cgataacaactggagtgttgcccgcgcctacaccgatagctggtttaccggagctgtatGCGACTTTa < 1:1290741‑M1/9‑1 (MQ=255) gCCGTTGGGAATATGACCGTAAGTGTCTATTTCATGAGCAAAATTGGCCACCATATCCGCGACTTTAt < 1:8147082/68‑1 (MQ=255) gCCGTTGGGAATATGACCGTAAGTGTCTATTTCATGAGCAAAATTGGCCACCATATCCGCGACTTTAt < 1:14342445/68‑1 (MQ=255) cGTTGGGAATATGACCGTAAGTGTCTATTTCATGAGCAAAATTGGCCACCATATCCGCGACTTTATcc < 1:5628028/68‑1 (MQ=255) ggtaaTATGACCGTAAGTGTCTATTTCATGAGCTAAATTGGCCACAATATCGGCGACTTTATCCCAGt < 1:4226938/65‑1 (MQ=255) gAATATGACCGTAAGTGTCTATTTCATGAGCAAAATTGGCCACCATATCCGCGACTTTATCCCAGTg > 1:31873523/1‑67 (MQ=255) atatGACCGTAAGTGTCTATTTCATGAGCAAAATTGGCCACCATATCCGCGACTTTATCCCAGTGACC > 1:30551834‑M1/1‑68 (MQ=255) atatGACCGTAAGTGTCTATTTCATGAGCAAAATTGGCCACCATATCCGCGACTTTATCCCAGTGACC > 1:19736476‑M1/1‑68 (MQ=255) agtgttgcccgcgcctacaccgatagctggtttaccggagctgtatGCGACTTTATCCCAGTGAcc < 1:6367836‑M1/20‑1 (MQ=255) agtgttgcccgcgcctacaccgatagctggtttaccggagctgtatGCGACTTTATCCCAGTGAcc < 1:9484005‑M1/20‑1 (MQ=255) agtgttgcccgcgcctacaccgatagctggtttaccggagctgtatGCGACTTTATCCCAGTGAcc < 1:19053343‑M1/20‑1 (MQ=255) agtgttgcccgcgcctacaccgatagctggtttaccggagctgtatGCGACTTTATCCCAGTGAcc < 1:11629687‑M1/20‑1 (MQ=255) tGACCGTAAGTGTCTATTTCATGAGCAAAATTGGCCACCATATCCGCGACTTTATCCCAGTGACCGCT < 1:23017700‑M1/68‑1 (MQ=255) gtgttgcccgcgcctacaccgatagctggtttaccggagctgtatGCGACTTTATCCCAGTGACCGc > 1:6077890‑M1/46‑67 (MQ=255) gtgttgcccgcgcctacaccgatagctggtttaccggagctgtatGCGACTTTATCCCAGTGACCGc > 1:33953869‑M1/46‑67 (MQ=255) gttgcccgcgcctacaccgatagctggtttaccggagctgtatGCGACTTTATCCCAGTGACCGCtt < 1:31080139‑M1/24‑1 (MQ=255) gttgcccgcgcctacaccgatagctggtttaccggagctgtatGCGACTTTATCCCAGTGACCGCt > 1:18590530‑M1/44‑66 (MQ=255) cGTAAGTGTCTATTTCATGAGCAAAATTGGCCACCATATCCGCGACTTTATCCCAGTGACCGCTTTCG < 1:25359199‑M1/68‑1 (MQ=255) cGTAAGTGTCTATTTCATGAGCAAAATTGGCCACCATATCCGCGACTTTATCCCAGTGACCGCTTTCG < 1:15699772‑M1/68‑1 (MQ=255) gTAAGTGTCTATTTCATGAGCAAAATTGGCCACCATATCCGCGACTTTATCCCAGTGACCGCTTTCG > 1:20754381‑M1/1‑67 (MQ=255) ccgcgcctacaccgatagctggtttaccggagctgtatGCGACTTTATCCCAGTGACCGCTTTCGGCa < 1:5177721‑M1/30‑1 (MQ=255) gtCTATTTCATGATCAAAATTGGCCACCATATCCGCGACTTTATCCCAGTGACCGCTTTCGGCAAGt < 1:19475672/67‑1 (MQ=255) gtCTATTTCATGAGCAAAATTGGCCACCATATCCGCGACTTTATCCCAGTGACCGCTTTCGGCAAg < 1:11365165/66‑1 (MQ=255) gtCTATTTCATGAGCAAAATTGGCCACCATATCCGCGACTTTATCCCAGTGACCGCTTTCGGCAAg < 1:15250444/66‑1 (MQ=255) gtCTATTTCATGAGCAAAATTGGCCACCATATCCGCGACTTTATCCCAGTGACCGCTTTCGGCAAGt < 1:13328308/67‑1 (MQ=255) gtCTATTTCATGAGCAAAATTGGCCACCATATCCGCGACTTTATCCCAGTGACCGCTTTCGGCAAGt < 1:4600334/67‑1 (MQ=255) gtCTATTTCATGAGCAAAATTGGCCACCATATCCGCGACTTTATCCCAGTGACCGCTTTCGGCAAGt < 1:4877885/67‑1 (MQ=255) gtCTATTTCATGAGCAAAATTGGCCACCATATCCGCGACTTTATCCCAGTGACCGCTTTCGGCAAGt < 1:26628060/67‑1 (MQ=255) gtCTATTTCATGAGCAAAATTGGCCACCATATCCGCGACTTTATCCCAGTGACCGCTTTCGGCAAGt < 1:21037695/67‑1 (MQ=255) gtCTATTTCATGAGCAAAATTGGCCACCATATCCGCGACTTTATCCCAGTGACCGCTTTCGGCAAGt < 1:15989013/67‑1 (MQ=255) gtCTATTTCATGAGCAAAATTGGCCACCATATCCGCGACTTTATCCCAGTGACCGCTTTCGGCAAGt < 1:29032167/67‑1 (MQ=255) gtCTATTTCATGAGCAAAATTGGCCACCATATCCGCGACTTTATCCCAGTGACCGCTTTCGGCAAGt < 1:9232192/67‑1 (MQ=255) gtCTATTTCATGAGCAAAATTGGCCACCATATCCGCGACTTTATCCCAGTGACCGCTTTCGGCAAGt < 1:1743406/67‑1 (MQ=255) gtCTATTTCATGAGCAAAATTGGCCACCATATCCGCGACTTTATCCCAGTGACCGCTTTCGGCAAGt < 1:17201372/67‑1 (MQ=255) gtCTATTTCATGAGCAAAATTGGCCACCATATCCGCGACTTTATCCCAGTGACCGCTTTCGGCAAGt < 1:28456164/67‑1 (MQ=255) gtCTATTTCATGAGCAAAATTGGCCACCATATCCGCGACTTTATCCCAGTGACCGCTTTCGGCAAGTc < 1:36808307/68‑1 (MQ=255) gtCTATTTCATGAGCAAAATTGGCCACCATATCCGCGACTTTATCCCAGTGACCGCTTTCGGCAAGTc < 1:7426229/68‑1 (MQ=255) gtCTATTTCATGAGCAAAATTGGCCACCATATCCGCGACTTTATCCCAGTGACCGCTTTCGGCAAGTc < 1:23734117/68‑1 (MQ=255) gtCTATTTCATGAGCAAAATTGGCCACCATATCCGCGACTTTATCCCAGTGACCGCTTTCGGCAAGTc < 1:11062796/68‑1 (MQ=255) gtCTATTTCATGAGCAAAATTGGCCACCATATCCGCGACTTTATCCCAGTGACCGCTTTCGGCAAGTc < 1:33162017/68‑1 (MQ=255) gcctacaccgatagctggtttaccggagctgtatGCGACTTTATCCCAGTGACCGCTTTCGGCAAGt > 1:25868958‑M1/35‑67 (MQ=255) gcctacaccgatagctggtttaccggagctgtatGCGACTTTATCCCAGTGACCGCTTTCGGCAAGt > 1:26907595‑M1/35‑67 (MQ=255) gcctacaccgatagctggtttaccggagctgtatGCGACTTTATCCCAGTGACCGCTTTCGGCAAGt > 1:27531213‑M1/35‑67 (MQ=255) gcctacaccgatagctggtttaccggagctgtatGCGACTTTATCCCAGTGACCGCTTTCGGCAAGTc > 1:37046608‑M1/35‑68 (MQ=255) gcctacaccgatagctggtttaccggagctgtatGCGACTTTATCCCAGTGACCGCTTTCGGCAAGTc > 1:28160784‑M1/35‑68 (MQ=255) gcctacaccgatagctggattaccggagctgtatGCGACTTTATCCCAGTGACCGCTTTCGGCAAGt > 1:12450096‑M1/35‑67 (MQ=255) cTATTTCATGAGCAAAATTGGCCACCATATCCGCGACTTTATCCCAGTGACCGCTTTCGGCAAGTCCt < 1:34611999/68‑1 (MQ=255) tttCATGAGCAAAATTGGCCACCATATCCGCGACTTTATCCCAGTGACCGCTTTCGGCAAGTCCTAAc > 1:11965568/1‑68 (MQ=255) tttCATGAGCAAAATTGGCCACCATATCCGCGACTTTATCCCAGTGACCGCTTTCGGCAAGTCCTAAc > 1:10005355/1‑68 (MQ=255) ttCATGAGCAAAATTGGCCACCATATCCGCGACTTTATCCCAGTGACCGCTTTCGGCAAGTCCTAACa > 1:23313305/1‑68 (MQ=255) accgatagctggtttaccggagctgtatGCGACTTTATCCCAGTGACCGCTTTCGGCAAGTCCTAACa < 1:30771380‑M1/40‑1 (MQ=255) tCATGAGCAAAATTGGCCACGATATCCGCGACTTTATCCCAGTGACCGCTTTCGGCAAGTCCTAACAt < 1:34274611/68‑1 (MQ=255) tCATGAGCAAAATTGGCCACCATATCCGCGACTTTATCCCAGTGACCGCTTTCGGCAAGTCCTAACAt < 1:35743621/68‑1 (MQ=255) tCATGAGCAAAATTGGCCACCATATCCGCGACTTTATCCCAGTGACCGCTTTCGGCAAGTCCTAACAt > 1:1800673/1‑68 (MQ=255) cgatagctggtttaccggagctgtatGCGACTTTATCCCAGTGACCGCTTTCGGCAAGTCCTAACATg < 1:30074693‑M1/42‑1 (MQ=255) tagctggtttaccggagctgtatGCGACTTTATCCCAGTGACCGCTTTCGGCAAGTCCTAACATGGTg > 1:28748389‑M1/24‑68 (MQ=255) tagctggtttaccggagctgtatGCGACTTTATCCCAGTGACCGCTTTCGGCAAGTCCTAACATGGTg > 1:22292521‑M1/24‑68 (MQ=255) taGCAAAATTGGCCACCATATCCGCGACTTTATCCCAGTGACCGCTTTCGGCAAGTCCTAACATGGTg < 1:8569120/67‑1 (MQ=255) gAGCAAAATTGGCCACCATATCCGCGACTTTATCCCAGTGACCGCTTTCGGCAAGTCCTAACATGGTg < 1:20065947/68‑1 (MQ=255) gAGCAAAATTGGCCACCATATCCGCGACTTTATCCCAGTGACCGCTTTCGGCAAGTCCTAACATGGTg < 1:10290938/68‑1 (MQ=255) aaaaTTGGCCACCATATCCGCGACTTTATCCCAGTGACCGCTTTCGGCAAGTCCTAACATGGTGaa < 1:27212696/66‑1 (MQ=255) aaaaTTGGCCACCATATCCGCGACTTTATCCCAGTGACCGCTTTCGGCAAGTCCTAACATGGTGaa < 1:31525058/66‑1 (MQ=255) aaaaTTGGCCACCATATCCGCGACTTTATCCCAGTGACCGCTTTCGGCAAGTCCTAACATGGTGaa < 1:14638713/66‑1 (MQ=255) aaaaTTGGCCACCATATCCGCGACTTTATCCCAGTGACCGCTTTCGGCAAGTCCTAACATGGTGAAGt < 1:22627119/68‑1 (MQ=255) aaaaTTGGCCACCATATCCGCGACTTTATCCCAGTGACCGCTTTCGGCAAGTCCTAACATGGTGAAGt < 1:6758249/68‑1 (MQ=255) aaaaTTGGCCACCATATCCGCGACTTTATCCCAGTGACCGCTTTCGGCAAGTCCTAACATGGTGAAGt < 1:18303313/68‑1 (MQ=255) tGGCCACCATATCCGCGACTTTATCCCAGTGACCGCTTTCGGCAAGTCCTAACATGGTGAAGTAACTg < 1:29684915/68‑1 (MQ=255) tgCCACCATATTCGGGACTTTATCCCATTGTCCGGTTTCGGCAAGTCCTAACATGGTGAAGTAACTGt < 1:1491385/67‑1 (MQ=255) ggCCACCATATCCGCGACTTTATCCCAGTGACCGCTTTCGGCAAGTCCTAACATGGTGAAGTAACTGt < 1:16814123/68‑1 (MQ=255) ggCCACCATATCCGCGACTTTATCCCAGTGACCGCTTTCGGCAAGTCCTAACATGGTGAAGTAACTGt < 1:36172970/68‑1 (MQ=255) ggCCACCATATCCGCGACTTTATCCCAGTGACCGCTTTCGGCAAGTCCTAACATGGTGAAGTAACTGt < 1:35406194/68‑1 (MQ=255) ggCCACCATATCCGCGACTTTATCCCAGTGACCGCTTTCGGCAAGTCCTAACATGGTGAAGTAACTGt < 1:3513825/68‑1 (MQ=255) ggCCACCATATCCGCGACTTTATCCCAGTGACCGCTTTCGGCAAGTCCTAACATGGTGAAGTAACTGt < 1:13518459/68‑1 (MQ=255) ccggagctgtatGCGACTTTATCCCAGTGACCGCTTTCGGCAAGTCCTAACATGGTGAAGTAACTGTc > 1:29313364‑M1/13‑68 (MQ=255) cctccaTATACGCGACTTTATCCCAGTGACCGCTTTCGGCAAGTCGTAACATGGTGAAGTAACTGTc < 1:21930122/64‑1 (MQ=255) ccaccaTATCCGCGACTTTATCCCAGTGACCGCTTTCGGCAAGTCCTAACATGGTGAAGTAACTGTc < 1:32852439/67‑1 (MQ=255) accaTATCCGCGACTTTATCCCAGTGACCGCTTTCGGCAAGTCCTAACATGGTGAAGTAACTGTCCCa < 1:25600398/68‑1 (MQ=255) agctgtatGCGACTTTATCCCAGTGACCGCTTTCGGCAAGTCCTAACATGGTGAAGTAACTGTCCCa > 1:13988955‑M1/9‑67 (MQ=255) caTATCCGCGACTTTATCCCAGTGACCGCTTTCGGCAAGTCCTAACATGGTGAAGTAACTGTCCCAGt < 1:36456349/68‑1 (MQ=255) caTATCCGCGACTTTATCCCAGTGACCGCTTTCGGCAAGTCCTAACATGGTGAAGTAACTGTCCCAGt < 1:16397071/68‑1 (MQ=255) caTATCCGCGACTTTATCCCAGTGACCGCTTTCGGCAAGTCCTAACATGGTGAAGTAACTGTCCCAGt < 1:1769459/68‑1 (MQ=255) caTATCCGCGACTTTATCCCAGTGACCGCTTTCGGCAAGTCCTAACATGGTGAAGTAACTGTCCCAGt < 1:20362109/68‑1 (MQ=255) caTATCCGCGACTTTATCCCAGTGACCGCTTTCGGCAAGTCCTAACATGGTGAAGTAACTGTCCCAGt < 1:21472087/68‑1 (MQ=255) caTATCCGCGACTTTATCCCAGTGACCGCTTTCGGCAAGTCCTAACATGGTGAAGTAACTGTCCCAGt < 1:10606208/68‑1 (MQ=255) caTATCCGCGACTTTATCCCAGTGACCGCTTTCGGCAAGTCCTAACATGGTGAAGTAACTGTCCCAGt < 1:7055079/68‑1 (MQ=255) caTATCCGCGACTTTATCCCAGTGACCGCTTTCGGCAAGTCCTAACATGGTGAAGTAACTGTCCCAGt < 1:24464525/68‑1 (MQ=255) caTATCCGCGACTTTATCCCAGTGACCGCTTTCGGCAAGTCCTAACATGGTGAAGTAACTGTCCCAGt < 1:27892409/68‑1 (MQ=255) tgtatGCGACTTTATCCCAGTGACCGCTTTCGGCAAGTCCTAACATGGTGAAGTAACTGTCCCAGt > 1:24795260‑M1/6‑66 (MQ=255) tatCCGCGACTTTATCCCAGTGACCGCTTTCGGCAAGTCCTACCATGGTGAAGTAACTGTCCCAGTaa < 1:12194677/68‑1 (MQ=255) tatCCGCGACTTTATCCCAGTGACCGCTTTCGGCAAGTCCTAACATGGTGAAGTAACTGTCCCAGTaa > 1:24213088/1‑68 (MQ=255) ccGCGACTTTATCCCAGTGACCGCTTTCGGCAAGTCCTAACATGGTGAATTAACTGTCCCAGTAatat > 1:25029492/1‑68 (MQ=255) | CTGCGGTTGCCGTTGGGAATATGACCGTAAGTGTCTATTTCATGAGCAAAATTGGCCACCATATCCGCGACTTTATCCCAGTGACCGCTTTCGGCAAGTCCTAACATGGTGAAGTAACTGTCCCAGTAATATAC > CP009273/1242234‑1242367 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |