| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 2323869 = | 378 (0.850) | 20 (0.050) | 6/94 | NT | 5.5% | pseudogene (4013/4605 nt) | yfaS | pseudogene, bacterial alpha2‑macroglobulin YfaS variant family; putative membrane protein |
| ? | CP009273 | 2323928 = | 369 (0.990) | pseudogene (3954/4605 nt) | yfaS | pseudogene, bacterial alpha2‑macroglobulin YfaS variant family; putative membrane protein | |||||
Only 100 of 517 total aligned reads displayed.
CGATAATTCGTCACCAAAAGAGAGAATGTCCGGCACGCCCTGACCAACCCAACGCCAGTCTTCGCCCCCTCCAGTTAACTTATGTTTAGCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGTCGC > CP009273/2323802‑2323936 | cgctgagcaatccactattgagcgcgcgctggccatgaactggctggcgaaatatatggcgacaatgc > 1:10645666‑M1/68‑68 (MQ=255) tgagcaatccactattgagcgcgcgctggccatgaactggctggcgaaatatatggcgacaatgCCt > 1:5425806‑M1/65‑67 (MQ=255) tgagcaatccactattgagcgcgcgcgggccatgaactggctggcgaaatatatggcgacaatgCCt > 1:18539580‑M1/65‑67 (MQ=255) tAATTCGTCACCAAAAGAGAGAATGTCCGGCACGCCCTGACCAACCCAACGCCAGTCTTCGCCCCCt < 1:35975767/67‑1 (MQ=255) tAATTCGTCACCAAAAGAGAGAATGTCCGGCACGCCCTGACCAACCCAACGCCAGTCTTCGCCCCCt < 1:27949232/67‑1 (MQ=255) tAATTCGTCACCAAAAGAGAGAATGTCCGGCACGCCCTGACCAACCCAACGCCAGTCTTCGCCCCCt < 1:31664102/67‑1 (MQ=255) aaTTCGTCACCAAAAGAGAGAATGTCCGGCACGCCCTGACCAACCCAACGCCAGTCTTCGCCCCCTcc < 1:5873926/68‑1 (MQ=255) aTTCGTCACCAAAAGAGAGAATGTCCGGCACGCCCTGACCAACCCAACGCCAGTCTTCGCCCCCTCCa < 1:19944075/68‑1 (MQ=255) ttCGTCACCAAAAGAGAGAATGTCCGGCACGCCCTGACCAACCCAACGCCAGTCTTCGCCCCCTCCAg > 1:4621403/1‑68 (MQ=255) gcaatccactattgagcgcgcgctggccatgaactggctggcgaaatatatggcgacaatgCCTCCa > 1:20490734‑M1/62‑67 (MQ=255) gcaatccactattgagcgcgcgctggccatgaactggctggcgaaatatatggcgacaatgCCTCCa > 1:32816348‑M1/62‑67 (MQ=255) gcaatccactattgagcgcgcgctggccatgaactggctggcgaaatatatggcgacaatgCCTCCa > 1:15715157‑M1/62‑67 (MQ=255) gcaatccactattgagcgcgcgctggccatgaactggctggcgaaatatatggcgacaatgCCTCCAg < 1:15430261‑M1/7‑1 (MQ=255) tCGTCACCAAAAGAGAGAATGTCCGGCACGCCCTGACCAACCCAACGCCAGTCTTCGCCCCCTCCAGt < 1:17906004/68‑1 (MQ=255) cGTCACCAAATGAGAGAATGTCCGGCACGCCCTGACCACCCCAACGCCAGTCTTCGCCCCCTCCAGtt > 1:30014901/1‑68 (MQ=255) cGTCACCAAAAGAGAGAATGTCCGGCACGCCCTGACCAACCCAACGCCAGTCTTCGCCCCCTCCAGtt > 1:29704125/1‑68 (MQ=255) cGTCACCAAAAGAGAGAATGTCCGGCACGCCCTGACCAACCCAACGCCAGTCTTCGCCCCCTCCAGtt > 1:28895530/1‑68 (MQ=255) cGTCACCAAAAGAGAGAATGTCCGGCACGCCCTGACCAACCAAACGCCAGTCTTCGCCCCCTCCAGtt > 1:30878815/1‑68 (MQ=255) gTCACCAAAAGAGAGAATGTCCGGCACGCCCTGACCAACCCAACGCCAGTCTTCGCCCCCTCCAGTTa < 1:14769399/68‑1 (MQ=255) cACCAAAAGAGAGAATGTCCGGCACGCCCTGACCAACCCAACGCCAGTCTTCGCCCCCTCCAGTTaa < 1:7395723/67‑1 (MQ=255) cACCAAAAGAGAGAATGTCCGGCACGCCCTGACCAACCCAACGCCAGTCTTCGCCCCCTCCAGTTaa < 1:22140640/67‑1 (MQ=255) cACCAAAAGAGAGAATGTCCGGCACGCCCTGACCAACCCAACGCCAGTCTTCGCCCCCTCCAGTTAAc < 1:16398765/68‑1 (MQ=255) cACCAAAAGAGAGAATGTCCGGCACGCCCTGACCAACCCAACGCCAGTCTTCGCCCCCTCCAGTTAAc < 1:21404269/68‑1 (MQ=255) aCCAAAAGAGAGAATGTCCGGCAGGCCCTGACCAACCCAACGCCAGTCTTCGCCCCCTCCAGTTAACt < 1:12699946/68‑1 (MQ=255) aCCAAAAGAGAGAATGTCCGGCACGCCCTGACCAACCCAACGCCAGTCTTCGCCCCCTCCAGTTAACt < 1:16759735/68‑1 (MQ=255) aCCAAAAGAGAGAATGTCCGGCACGCCCTGACCAACCCAACGCCAGTCTTCGCCCCCTCCAGTTAACt < 1:22460962/68‑1 (MQ=255) aCCAAAAGAGAGAATGTCCGGCACGCCCTGACCAACCCAACGCCAGTCTTCGCCCCCTCCAGTTAACt < 1:24652916/68‑1 (MQ=255) taaGAGAGAATGTCCGGCACGCCCTGAGCTAGCCAACGCCAGTCTTCGGCCCGTCCAGTTATCTTATg < 1:6440172/67‑1 (MQ=255) aaaGAGAGAATGTCCGGCACGCCCTGACCAACCCAACGCCAGTCTTCGCCCCCTCCAGTTAACTTATg < 1:26720024/68‑1 (MQ=255) aaaGAGAGAATGTCCGGCACGCCCTGACCAACCCAACGCCAGTCTTCGCCCCCTCCAGTTAACTTATg < 1:5135009/68‑1 (MQ=255) aaaGAGAGAATGTCCGGCACGCCCTGACCAACCCAACGCCAGTCTTCGCCCCCTCCAGTTAACTTATg < 1:10278170/68‑1 (MQ=255) aaaGAGAGAATGTCCGGCACGCCCTGACCAACCCAACGCCAGTCTTCGCCCCCTCCAGTTAACTTATg < 1:8737978/68‑1 (MQ=255) aaaGAGAGAATGTCCGGCACGCCCTGACCAACCCAACGCCAGTCTTCGCCCCCTCCAGTTAACTTATg < 1:6851048/68‑1 (MQ=255) aaaGAGAGAATGTCCGGCACGCCCTGACCAACCCAACGCCAGTCTTCGCCCCCTCCAGTTAACTTATg < 1:17246479/68‑1 (MQ=255) aaaGAGAGAATGTCCGGCACGCCCTGACCAACCCAACGCCAGTCTTCGCCCCCTCCAGTTAACTTATg < 1:5816825/68‑1 (MQ=255) aaGAGAGATTGTCCGGCACGCCCTGACCAACGCAACGCCAGTCTTCGCACCCTCCAGTTAACTTAttt < 1:28338176/68‑3 (MQ=255) aaGAGAGAATGTCCGGCACGCCCTGACCAACCCAACGCCAGTCTTCGCCCCCTCCAGTTAACTTATGt < 1:30473559/68‑1 (MQ=255) agagagAATGTCCGGCACGCCCTGCCCAACCCAACGCCAGTCTTCGCCCCCTCCAGTTAACTTATGtt > 1:6092438/1‑68 (MQ=255) agagagAATGTCCGGCACGCCCTGACCAACCCAACGCCAGTCTTCGCCCCCTCCAGTTATCTTATGtt > 1:1158275/1‑68 (MQ=255) agagaATGTCCGGCACGCCCTGACCAACCCAACGCCAGTCTTCGCCCCCTCCAGTTAACTTATGTTTa > 1:8509487/1‑68 (MQ=255) agagaATGTCCGGCACGCCCTGACCAACCCAACGCCAGTCTTCGCCCCCTCCAGTTAACTTATGTTTa > 1:13219215/1‑68 (MQ=255) gagaATGTCCGGCACGCCCTGACCAACCCAACGCCAGTCTTCGCCCCCTCCAGTTAACTTATGTTTa < 1:27183151/67‑1 (MQ=255) aaTGTCCGGCACGCCCTGACCAACCCAACGCCAGTCTTCGCCCCCTCCAGTTAACTTATGTTTAGccc > 1:17691941/1‑68 (MQ=255) aaTGTCCGGCACGCCCTGACCAACCCAACGCCAGTCTTCGCCCCCTCCAGTTAACTTATGTTTAGccc > 1:20869111/1‑68 (MQ=255) aTGTCCGGCACGCCCTGCCCTACCCCACGCCAGTCTTCGCCCCCTCCAGTTAACTTATGTTTAGCCCa > 1:34389568/1‑68 (MQ=255) aTGTCCGGCACGCCCTGACCAACCCAACGCCAGTCTTCGTCCCCTCCAGTTAACTTATGTTTAGccc < 1:21179177/67‑1 (MQ=255) tGTCCGGCACGCCCTGACCAACCCAACGCCAGTCTTCGCCCCCTCCAGTTAACTTATGTTTAGCCCAt > 1:12129741/1‑68 (MQ=255) ggCACGCCCTGACCAACCCAACGCCAGTCTTCGCCCCCTCCAGTTAACTTATGTTTAGCCCATGCGcc < 1:7902200/68‑1 (MQ=255) gCACGCCCTGACCAACCCAACGCCAGTCTTCGCCCCCTCCAGTTAACTTATGTTTAGCCCATGCGccc > 1:18203824/1‑68 (MQ=255) aCGCCCTGACCAACCCAACGCCAGTCTTCGCCCCCTCCAGTTAACTTATGTTTAGCCCATGCGCCcgc > 1:15284533/1‑68 (MQ=255) ccTGACCAACCCAACGCCAGTCTTCGCCCCCTCCAGTTAACTTATGTTTAGCCCATGCGCCcgcaggc > 1:24896217/1‑68 (MQ=255) ccTGACCAACCCAACGCCAGTCTTCGCCCCCTCCAGTTAACTTATGTTTAGCCCATGCGCCcgcagg < 1:32516913/67‑1 (MQ=255) cccaacccaacGCCAGTCTTCGCCCCCTCCAGTTAACTTATGTTTAGCCCATGCGCCcgcaggcgcag > 1:23414783/2‑68 (MQ=255) aCCAACCCAACGCGAGTCTTCGCCCCCTCCAGTTAACTTATGTTTAGCCCATGCGCCcgcaggcgcag < 1:1369584/68‑1 (MQ=255) aCCAACCCAACGCCAGTCTTCGCCCCCTCCAGTTAACTTATGTTTAGCCCATGCGCCcgcaggcgcag > 1:37100651/1‑68 (MQ=255) ccaacccaacGCCAGTCTTCGCCCCCTCCAGTTAACTTATGTTTAGCCCATGCGCCcgcaggcgcagg < 1:31412973/68‑1 (MQ=255) ccaacccaacGCCAGTCTTCGCCCCCTCCAGTTAACTTATGTTTAGCCCATGCGCCcgcaggcgcagg < 1:1896404/68‑1 (MQ=255) ccaacccaacGCCAGTCTTCGCCCCCTCCAGTTAACTTATGTTTAGCCCATGCGCCcgcaggcgcagg < 1:19619000/68‑1 (MQ=255) ccaacccaacGCCAGTCTTCGCCCCCTCCAGTTAACTTATGTTTAGCCCATGCGCCcgcaggcgcag > 1:33454320/1‑67 (MQ=255) ccaacccaacGCCAGTCTTCGCCCCCTCCAGTTAACTTATGTTTAGCCCATGCGCCcgcaggcgcag > 1:9264089/1‑67 (MQ=255) ccaacccaacGCCAGTCTTCGCCCCCTCCAGTTAACTTATGTTTAGCCCATGCGCCcgcaggcgcag > 1:4066561/1‑67 (MQ=255) ccaacccaacGCCAGTCTTCGCCCCCTCCAGTTAACTTATGTTTAGCCCATGCGCCcgcaggcgcag > 1:2160673/1‑67 (MQ=255) ccaacccaacGCCAGTCTTCGCCCCCTCCAGTTAACTTATGTTTAGCCCATGCGCCcgcaggcgcag < 1:11896552/67‑1 (MQ=255) caacccaccGCCAGTCTTCGCCCCCTCCAGTTAACTTATGTTTAGCCCATGCGCCCgcaggcgcaggc < 1:808906/68‑1 (MQ=255) aacccaacGCCAGTCTTCGCCCCCTCCAGGTAACTTATGTTTAGCCCATGCGCCCGCAGGCGCAGGCa < 1:31938469/68‑1 (MQ=255) cccaacGCCAGGCTTCGCCCCCTCCAGTTAACTTATGTTTAGCCCATGCGCCCGCAGGCGCAGGCaaa < 1:26512790/68‑1 (MQ=255) ccaacGCCAGTCTTCGCCCCCTCCAGTTAACTTATGTTTAGCCCATGCGCCCGCAGGCGCAGGCaaa > 1:35756806/1‑67 (MQ=255) ccaacGCCAGTCTTCGCCCCCTCCAGTTAACTTATGTTTAGCCCATGCGCCCGCAGGCGCAGGCaaa > 1:28548674/1‑67 (MQ=255) ccaacGCCAGTCTTCGCCCCCTCCAGTTAACTTATGTTTAGCCCATGCGCCCGCAGGCGCAGGCaaa > 1:6713399/1‑67 (MQ=255) ccaacGCCAGTCTTCGCCCCCTCCAGTTAACTTATGTTTAGCCCATGCGCCCGCAGGCGCAGGCaaa > 1:33613958/1‑67 (MQ=255) cGCCAGTCTTCGCCCCCTCCAGTTAACTTATGTTTAGCCCATGCGCCCGCAGGCGCAGGCAAaacaac < 1:19320428/68‑1 (MQ=255) gCCAGTCTTCGCCCCCTCCAGTTAACTTATGTTTAGCCCATGCGCCCGCAGGCGCAGGCAAaaca > 1:24118272/1‑65 (MQ=255) gCCAGTCTTCGCCCCCTCCAGTTAACTTATGTTTAGCCCATGCGCCCGCAGGCGCAGGCAAaaca > 1:33109136/1‑65 (MQ=255) gCCAGTCTTCGCCCCCTCCAGTTAACTTATGTTTAGCCCATGCGCCCGCAGGCGCAGGCAAaaca > 1:9169640/1‑65 (MQ=255) gCCAGTCTTCGCCCCCTCCAGTTAACTTATGTTTAGCCCATGCGCCCGCAGGCGCAGGCAAaaca > 1:28116668/1‑65 (MQ=255) ccAGTCTTCGCCCCCTCCAGTTAACTTATGTTTAGCCCATGCGCACGCGGGCGCGGCCAAAACTACTg > 1:16895875/1‑68 (MQ=255) ccAGTCTTCGCCCCCTACAGTTAACTTATGTTTAGCCCATGCGCCCGCAGGCGCAGGCAAAACAACTg > 1:29420977/1‑68 (MQ=255) gTCTTCGCCCCCTCCAGTTAACTTATGTTTAGCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGAg > 1:25250283/1‑68 (MQ=255) tCTTCGCCCCCTCCAGTTAACTTATGTTTAGCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGAg > 1:10070244/1‑67 (MQ=255) tCTTCGCCCCCTCCAGTTAACTTATGTTTAGCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGAg > 1:35309200/1‑67 (MQ=255) tCTTCGCCCCCTCCAGTTAACTAATGTTTACCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGAg > 1:14459334/1‑67 (MQ=255) cgacaatgCCTCCAGTTAACTTATGTTTAGCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGc < 1:11234102‑M1/60‑1 (MQ=255) cgacaatgCCTCCAGTTAACTTATGTTTAGCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGc < 1:25536964‑M1/60‑1 (MQ=255) cTTCGCCCCCTCCAGTTAACTTATGTTTAGCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGAgg < 1:14165366/67‑1 (MQ=255) cTTCGCCCCCTCCAGTTAACTTATGTTTAGCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGAgg < 1:16091562/67‑1 (MQ=255) cTTCGCCCCCTCCAGTTAACTTATGTTTAGCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGAg < 1:15072451/66‑1 (MQ=255) cTTCGCCCCCTCCAGTTAACTTATGTTTAGCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGc < 1:25344190/68‑1 (MQ=255) cGCCCCCTCCAGTTAACTTATGTTTAGCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCAtt < 1:25874826/68‑1 (MQ=255) cccccTCCAGTTAACTTATGTTTAGCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTg > 1:3672096/1‑67 (MQ=255) cccccTCCAGTTAACTTATGTTTAGCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTg > 1:7631070/1‑67 (MQ=255) cccccTCCAGTTAACTTATGTTTAGCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTg > 1:27449268/1‑67 (MQ=255) cccccTCCAGTTAACTTATGTTTAGCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTg > 1:22968283/1‑67 (MQ=255) ccccTCCAGTTAACTTATGTTTAGCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGTc < 1:18110742/68‑1 (MQ=255) ccccTCCAGTTAACTTATGTTTAGCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGTc < 1:32418076/68‑1 (MQ=255) CCTCCAGTTAACTTATGTTTAGCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGTCGc > 1:29246928‑M1/1‑68 (MQ=255) CCTCCAGTTAACTTATGTTTAGCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGTCGc > 1:8616316‑M1/1‑68 (MQ=255) CCTCCAGTTAACTTATGTTTAGCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGTCGc > 1:11687517‑M1/1‑68 (MQ=255) CCTCCAGTTAACTTATGTTTAGCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGTCGc > 1:12944589‑M1/1‑68 (MQ=255) CCTCCAGTTAACTTATGTTTAGCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGTCGc > 1:34713815‑M1/1‑68 (MQ=255) CCTCCAGTTAACTTATGTTTAGCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGTCGc > 1:24212406‑M1/1‑68 (MQ=255) | CGATAATTCGTCACCAAAAGAGAGAATGTCCGGCACGCCCTGACCAACCCAACGCCAGTCTTCGCCCCCTCCAGTTAACTTATGTTTAGCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGTCGC > CP009273/2323802‑2323936 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |