New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 2323869 =378 (0.850)20 (0.050) 6/94 NT 5.5% pseudogene (4013/4605 nt) yfaS pseudogene, bacterial alpha2‑macroglobulin YfaS variant family; putative membrane protein
?CP009273 2323928 = 369 (0.990)pseudogene (3954/4605 nt) yfaS pseudogene, bacterial alpha2‑macroglobulin YfaS variant family; putative membrane protein

Only 100 of 570 total aligned reads displayed.

CTTCGCCCCCTCCAGTTAACTTATGTTTAGCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGTCGCCATATATTTCGCCAGCCAGTTCATGGCCAGCGCGCGCTCAATAGTGGATTGCTCAGCGG  >  CP009273/2323861‑2323995
                                                                   |                                                                   
cgacaatgCCTCCAGTTAACTTATGTTTAGCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGc                                                                     <  1:11234102‑M1/60‑1 (MQ=255)
     cccccTCCAGTTAACTTATGTTTAGCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTg                                                                 >  1:22968283/1‑67 (MQ=255)
     cccccTCCAGTTAACTTATGTTTAGCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTg                                                                 >  1:32454155/1‑67 (MQ=255)
     cccccTCCAGTTAACTTATGTTTAGCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTg                                                                 >  1:14066752/1‑67 (MQ=255)
     cccccTCCAGTTAACTTATGTTTAGCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTg                                                                 >  1:25306190/1‑67 (MQ=255)
       cccTCCAGTTAACTTATGTTTAGCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGTc                                                               >  1:21313866/1‑67 (MQ=255)
       cccTCCAGTTAACTTATGTTTAGCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGTCg                                                              <  1:32935136/68‑1 (MQ=255)
        gCTCCAGTTAACTTATGTTTAGCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGTCGc                                                             >  1:19795025‑M1/2‑68 (MQ=255)
        CCTCCAGTTAACTTATGTTTAGCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGTCGc                                                             >  1:29246928‑M1/1‑68 (MQ=255)
        CCTCCAGTTAACTTATGTTTAGCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGTCGc                                                             >  1:34713815‑M1/1‑68 (MQ=255)
         ctccagttgttttgcctgcgcctgcgggcgcatgggctaaacataagttaactggaggCATTGTCGc                                                             <  1:12776703‑M2/9‑1 (MQ=255)
           CCAGTTAACTTATGTTTAGCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGTCGCCat                                                          <  1:3504453‑M1/68‑1 (MQ=255)
           CCAGTTAACTTATGCGTAGCCCATGCGCCCGCCGGCGCAGGCAAAACAACTGGAGGCATTGTCGCCat                                                          >  1:24334525‑M1/1‑68 (MQ=255)
               TTAACTTATGTTTAGCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGTCGCCatatat                                                      <  1:8011718‑M1/68‑1 (MQ=255)
                TAACTTATGTTTAGCCCATGCGCCCGCAGGCGCAGGCAAACCAACTGGAGGCATTGTCGCCATATAtt                                                     <  1:16024640‑M1/68‑1 (MQ=255)
                TAACTTATGTTTAGCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGTCGCCatata                                                       >  1:27386688‑M1/1‑66 (MQ=255)
                TAACTTATGTTTAGCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGTCGCCatata                                                       >  1:13302279‑M1/1‑66 (MQ=255)
                TAACTTATGTTTAGCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGTCGCCatata                                                       >  1:942062‑M1/1‑66 (MQ=255)
                TAACTTATGTTTAGCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGTCGCCatat                                                        >  1:15370701‑M1/1‑65 (MQ=255)
                TAACTTATGTTTAGCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGTCGCCATATAtt                                                     <  1:20212053‑M1/68‑1 (MQ=255)
                TAACTTATGTTTAGCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGTCGCCATATAtt                                                     <  1:10054929‑M1/68‑1 (MQ=255)
                TAACTTATGTTTAGCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGTCGCCATATAtt                                                     <  1:19477516‑M1/68‑1 (MQ=255)
                TAACTTATGTTTAGCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGTCGCCATATAtt                                                     <  1:913469‑M1/68‑1 (MQ=255)
                TAACTTATGTTTAGCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGTCGCCATATAtt                                                     <  1:18635376‑M1/68‑1 (MQ=255)
                  aCTTATGTTTAGCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGTCGCCATATATTTc                                                   <  1:4561435/68‑1 (MQ=255)
                  aCTTATGTTTAGCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGTCGCCATATATTTc                                                   >  1:19241057/1‑68 (MQ=255)
                  aCTTATGTTTAGCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGTCGCCATATATTTc                                                   <  1:23112017/68‑1 (MQ=255)
                  aCTTATGTTTAGCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGTCGCCATATATTTc                                                   <  1:2367278/68‑1 (MQ=255)
                  aCTTATGTTTAGCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGTCGCCATATATTTc                                                   >  1:3705216/1‑68 (MQ=255)
                  aCTTATGTTTAGCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGTCGCCATATATTTc                                                   <  1:12307470/68‑1 (MQ=255)
                     tATGTTTAGCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGTCGCCATATATTTCgcc                                                >  1:36612295/1‑68 (MQ=255)
                     tATGTTTAGCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGTCGCCATATATTTCgcc                                                >  1:9602393/1‑68 (MQ=255)
                       tGTTTAGCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGTCGCCATATATTTCgccag                                              <  1:34169574/68‑1 (MQ=255)
                        gTTTAGCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGTCGCCATATATTTCgccag                                              >  1:2689258/1‑67 (MQ=255)
                        gTTTAGCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGTCGCCATATATTTCgccag                                              >  1:30433935/1‑67 (MQ=255)
                        gTTTAGCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGTCGCCATATATTTCgccag                                              >  1:8703243/1‑67 (MQ=255)
                        gTTTAGCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGTCGCCATATATTTCgccag                                              >  1:1378526/1‑67 (MQ=255)
                        gTTTAGCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGTCGCCATATATTTCgccag                                              >  1:7010996/1‑67 (MQ=255)
                        gTTTAGCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGTCGCCATATATTTCgccag                                              >  1:4968312/1‑67 (MQ=255)
                          ttAGCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGTCGCCATATATTTCgcccgcca                                           >  1:19016938/1‑68 (MQ=255)
                          ttAGCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGTCGCCATATATTTCgccagcca                                           >  1:3341750/1‑68 (MQ=255)
                          ttAGCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGTCGCCATATATTTCgccagcca                                           >  1:26549204/1‑68 (MQ=255)
                          ttAGCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGTCGCCATATATTTCgccagcca                                           >  1:28609303/1‑68 (MQ=255)
                          ttAGCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGTCGCCATATATTTCgccagcca                                           >  1:6549235/1‑68 (MQ=255)
                            aGCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGTCGCCATATATTTCGCCAGCCAGt                                         <  1:3105278/68‑1 (MQ=255)
                            aGCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGTCGCCATATATTTCGCCAGCCAGt                                         <  1:34499121/68‑1 (MQ=255)
                             gCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGTCGCCATATATTTCGCCAGCCAGt                                         >  1:22761727/1‑67 (MQ=255)
                             gCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGTCGCCATATATTTCGCCAGCCAGt                                         >  1:13503203/1‑67 (MQ=255)
                             gCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGTCGCCATATATTTCGCCAGCCAGt                                         >  1:20859763/1‑67 (MQ=255)
                             gCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGTCGCCATATATTTCGCCAGCCAGt                                         >  1:21952081/1‑67 (MQ=255)
                              cccATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGTCGCCATATATTTCGCCAGCCAGTTc                                       >  1:35196245/1‑68 (MQ=255)
                              cccATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGTCGCCATATATTTCGCCAGCCAGTTc                                       >  1:31316761/1‑68 (MQ=255)
                              cccATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGTCGCCATATATTTCGCCAGCCAGTTc                                       >  1:26369086/1‑68 (MQ=255)
                              cccATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGTCGCCATATATTTCGCCAGCCAGTTc                                       >  1:2222989/1‑68 (MQ=255)
                              cccATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGTCGCCATATATTTCGCCAGCCAGTTc                                       >  1:24206536/1‑68 (MQ=255)
                              cccATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGTCGCCATATATTTCGCCAGCCAGTTc                                       >  1:24846551/1‑68 (MQ=255)
                               ccATGCGCCCGCAGGCGCAGGCAAAACACCTGGAGGCATTGTCGCCATATATTTCGCCAGCCAGTTCa                                      >  1:18292899/1‑68 (MQ=255)
                               ccATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGTCGCCATATATTTCGCCAGCCAGtt                                        <  1:25799357/66‑1 (MQ=255)
                               ccATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGTCGCCATATATTTCGCCAGCCAGtt                                        <  1:477675/66‑1 (MQ=255)
                               ccATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGTCGCCATATATTTCGCCAGCCAGtt                                        <  1:22583156/66‑1 (MQ=255)
                               ccATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGTCGCCATATATTTCGCCAGCCAGtt                                        <  1:32693511/66‑1 (MQ=255)
                               ccATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGTCGCCATATATTTCGCCAGCCAGTTCa                                      >  1:11589832/1‑68 (MQ=255)
                               ccATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGTCGCCATATATTTCGCCAGCCAGTTCa                                      >  1:17549368/1‑68 (MQ=255)
                                    cgcCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGTCGCCATATATTTCGCCAGCCAGTTCATGGcc                                 >  1:5340958/1‑68 (MQ=255)
                                    cgcCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGTCGCCATATATTTCGCCAGCCAGTTCATGGc                                  >  1:18071619/1‑67 (MQ=255)
                                      cccGCAGGCGCAGGCAAAACAACTGGAGGCATTGTCGCCATATATTTCGCCAGCCAGTTCATGGCCa                                >  1:15522582/1‑67 (MQ=255)
                                              cgcaggcAAAACAACTGGAGGCATTGTCGCCATATATTTCGCCAGCCAGTTCATGGCCAgcgcgcgc                        <  1:25260790/67‑1 (MQ=255)
                                              cgcaggcAAAACAACTGGAGGCATTGTCGCCATATATTTCGCCAGCCAGTTCATGGCCAgcgcgcgc                        <  1:27832598/67‑1 (MQ=255)
                                              cgcaggcAAAACAACTGGAGGCATTGTCGCCATATATTTCGCCAGCCAGTTCATGGCCAgcgcgcgc                        <  1:7466385/67‑1 (MQ=255)
                                               gcatgcAAAACAACTGGAGGCATTGTCGCGATATATTTCGCCAGCCAGTTCATGGCCAGCGCGCGCTc                      <  1:29532154/68‑1 (MQ=255)
                                                 aggcAAAACAACTTGAGGCATTGTCGCCATATATTTCGCCAGCCAGTTCATGGCCAGCGCGCGCTCa                     <  1:11174118/67‑1 (MQ=255)
                                                 aggcAAAACAACTGGAGGCATTGTCGCCATATATTTCGCCAGCCAGTTCATGGCCAGCGCGCGCTCa                     <  1:16833318/67‑1 (MQ=255)
                                                 aggcAAAACAACTGGAGGCATTGTCGCCATATATTTCGCCAGCCAGTTCATGGCCAGCGCGCGCTCa                     <  1:25951039/67‑1 (MQ=255)
                                                 aggcAAAACAACTGGAGGCATTGTCGCCATATATTTCGCCAGCCAGTTCATGGCCAGCGCGCGCTCa                     <  1:21526993/67‑1 (MQ=255)
                                                 aggcAAAACAACTGGAGGCATTGTCGCCATATATTTCGCCAGCCAGTTCATGGCCAGCGCGCGCTCa                     <  1:29820759/67‑1 (MQ=255)
                                                    cAAAACAACTGGAGGCATTGTCGCCATATATTTCGCCAGCCAGTTCATGGCCAGCGCGCGCTCAAt                   <  1:5436126/66‑1 (MQ=255)
                                                    cAAAACAACTGGAGGCATTGTCGCCATATATTTCGCCAGCCAGTTCATGGCCAGCGCGCGCTCAAt                   <  1:6407353/66‑1 (MQ=255)
                                                    cAAAACAACTGGAGGCATTGTCGCCATATATTTCGCCAGCCAGTTCATGGCCAGCGCGCGCTCAAt                   <  1:14902044/66‑1 (MQ=255)
                                                    cAAAACAACTGGAGGCATTGTCGCCATATATTTCGCCAGCCAGTTCATGGCCAGCGCGCGCTCAAt                   <  1:10591210/66‑1 (MQ=255)
                                                    cAAAACAACTGGAGGCATTGTCGCCATATATTTCGCCAGCCAGTTCATGGCCAGCGCGCGCTCAAt                   <  1:27544937/66‑1 (MQ=255)
                                                    cAAAACAACTGGAGGCATTGTCGCCATATATTTCGCCAGCCAGTTCATGGCCAGCGCGCGCTCAAt                   <  1:4203636/66‑1 (MQ=255)
                                                    cAAAACAACTGGAGGCATTGTCGCCATATATTTCGCCAGCCAGTTCATGGCCAGCGCGCGCTCAAt                   <  1:3932881/66‑1 (MQ=255)
                                                    cAAAACAACTGGAGGCATTGTCGCCATATATTTCGCCAGCCAGTTCATGGCCAGCGCGCGCTCAAt                   <  1:28898370/66‑1 (MQ=255)
                                                    cAAAACAACTGGAGGCATTGTCGCCATATATTTCGCCAGCCAGTTCATGGCCAGCGCGCGCTCAAt                   <  1:36361328/66‑1 (MQ=255)
                                                    cAAAACAACTGGAGGCATTGTCGCCATATATTTCGCCAGCCAGTTCATGGCCAGCGCGCGCTCAAt                   <  1:35737012/66‑1 (MQ=255)
                                                    cAAAACAACTGGAGGCATTGTCGCCATATATTTCGCCAGCCAGTTCATGGCCAGCGCGCGCTCAAt                   <  1:17010338/66‑1 (MQ=255)
                                                     aaaaCAACTGGAGGCATTGTCGCCATATATTTCGCCAGCCAGTTCATGGCCAGCGCGCGCTCAATAGt                <  1:900909/68‑1 (MQ=255)
                                                       aacaacTGGAGGCATTGTCGCCATATATTTCGCCAGCCAGTTCATGGCCAGCGCGCGCTCAATAGTgg              <  1:8322950/68‑1 (MQ=255)
                                                       aacaacTGGAGGCATTGTCGCCATATATTTCGCCAGCCAGTTCATGGCCAGCGCGCGCTCAATAGTgg              <  1:13978592/68‑1 (MQ=255)
                                                         caacTGGAGGCATTGTCGCCATATATTTCGCCAGCCAGTTCATGGCCAGCGCGCGCTCAATAGTGGAt            >  1:23419068/1‑68 (MQ=255)
                                                         caacTGGAGGCATTGTCGCCATATATTTCGCCAGCCAGTTCATGGCCAGCGCGCGCTCAATAGTGGAt            >  1:32205341/1‑68 (MQ=255)
                                                         caacTGGAGGCATTGTCGCAATATATTTCGCCAGCCAGTTCATGGCCAGCGCGCGCGCAATAGTTGAt            >  1:2053968/1‑68 (MQ=255)
                                                            ctggaggCATTGTCGCCATATATTTCGCCAGCCAGTTCATGGCCAGCGCGCGCTCAATAGTGGATTGc         <  1:10290888‑M2/61‑1 (MQ=255)
                                                            ctggaggCATTGTCGCCATATATTTCGCCAGCCAGTTCATGGCCAGCGCGCGCTCAATAGTGGATTGc         <  1:3190778‑M2/61‑1 (MQ=255)
                                                             tggaggCATTGTCGCCATATATTTCGCCAGCCAGTTCATGGCCAGCGCGCGCTCAATAGTGGATTGc         >  1:15715157‑M2/7‑67 (MQ=255)
                                                             tggaggCATTGTCGCCATATATTTCGCCAGCCAGTTCATGGCCAGCGCGCGCTCAATAGTGGATTGc         >  1:28231115‑M2/7‑67 (MQ=255)
                                                                aggCATTGTCGCCATATATTTCGCCAGCCAGTTCATGGCCAGCGCGCGCTCAATAGTGGATTGCTCa      >  1:33198757‑M2/4‑67 (MQ=255)
                                                                aggCATTGTCGCCATATATTTCGCCAGCCAGTTCATGGCCAGCGCGCGCTCAATAGTGGATTGCTCa      >  1:16494360‑M2/4‑67 (MQ=255)
                                                                   cATTGTCGCCATATATTTCGCCAGCCAGTTCATGGCCAGCGCGCGCTCAATAGTGGATTGCTCAGCgg  >  1:14618679/1‑68 (MQ=255)
                                                                   cATTGTCGCCATATATTTCGCCAGCCAGTTCATGGCCAGCGCGCGCTCAATAGTGGATTGCTCAGCg   <  1:6027109/67‑1 (MQ=255)
                                                                   |                                                                   
CTTCGCCCCCTCCAGTTAACTTATGTTTAGCCCATGCGCCCGCAGGCGCAGGCAAAACAACTGGAGGCATTGTCGCCATATATTTCGCCAGCCAGTTCATGGCCAGCGCGCGCTCAATAGTGGATTGCTCAGCGG  >  CP009273/2323861‑2323995

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.