| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 2848992 | 428 (0.960) | 22 (0.060) | 7/96 | NT | 5.5% | coding (1296/2079 nt) | fhlA | formate hydrogenlyase transcriptional activator |
| ? | CP009273 | = 2849010 | 389 (1.020) | coding (1314/2079 nt) | fhlA | formate hydrogenlyase transcriptional activator | |||||
Only 100 of 635 total aligned reads displayed.
AACTGGCACGGGTAAAGAGCTGATTGCCCGTGCGATCCATAATCTCAGTGGGCGTAATAATCGCCGCATGGTCAAAATGAACTGCGCGGCGATGCCTGCCGGATTGCTGGAAAGCGATCTGTTTGGTCATGAG > CP009273/2848926‑2849058 | caccggtaaaagccccacgctcatgaccaaacagatcgctttccagcaatccggcaggcATcgccgc > 1:28116390‑M1/60‑67 (MQ=255)caccggtaaaagccccacgctcatgaccaaacagatcgctttccagcaatccggcaggcATcgccgc < 1:32127569‑M1/8‑1 (MQ=255) aCTGGCACGGGTAAAGAGCTGATTGCCCGTGCGATCCATAATCTCAGTGGGCGTAATAATCGCCGCAt > 1:6155834/1‑68 (MQ=255) cTGGCACGGGTAAAGAGCTGATTGCCCGTGCGATCCATAATCTCAGTGGGCGTAATAATCGCCGCATg < 1:10225238/68‑1 (MQ=255) ggCACGGGTAAAGAGCTGATTGCCCGTGCGATCCATAATCTCAGTGGGCGTAATAATCGCCGCATGGt < 1:2466541/68‑1 (MQ=255) ggCACGGGTAAAGAGCTGATTGCCCGTGCGATCCATAATCTCAGTGGGCGTAATAATCGCCGCATGGt < 1:748343/68‑1 (MQ=255) cACGGGTAAAGAGCTGATTGCCCGTGCGATCCATAATCTCAGTGGGCGTAATAATCGCCGCATGGTCa > 1:12663705/1‑68 (MQ=255) aCGGGTAAAGAGCTGATTGCCCGTGCGATCCATAATCTCAGTGGGCGTAATAATCGCCGCATGGTCaa < 1:25757880/68‑1 (MQ=255) aCGGGTAAAGAGCTGATTGCCCGTGCGATCCATAATCTCAGTGGGCGTAATAATCGCCGCATGGTCaa > 1:3291510/1‑68 (MQ=255) aCGGGTAAAGAGCTGATTGCCCGTGCGATCCATAATCTCAGTGGGCGTAATAATCGCCGCATGGTCaa < 1:15032910/68‑1 (MQ=255) aCGGGTAAAGAGCTGATTGCCCGTGCGATCCATAATCTCAGTGGGCGTAATAATCGCCGCATGGTCaa < 1:3554493/68‑1 (MQ=255) aaaGAGCTGATTGCCCGTGCGATCCATAATCTCAGTGGGCGTAATAATCGCCGCATGGTCAAAATGa < 1:2401285/67‑1 (MQ=255) agagCTGATTGCCCGTGCGATCCATAATCTCAGTGGGCGTAATAATCGCCGCATGGTCAAAATGa > 1:27085714/1‑65 (MQ=255) gagCTGATTGCCCGTGCGATCCATAATCTCAGTGGGCGTAATAATCGCCGCATGGTCAAAATGAACt > 1:15371170/1‑67 (MQ=255) gagCTGATTGCCCGTGCGATCCATAATCTCAGTGGGCGTAATAATCGCCGCATGGTCAAAATGAACt > 1:20748584/1‑67 (MQ=255) gagCTGATTGCCCGTGCGATCCATAATCTCAGTGGGCGTAATAATCGCCGCATGGTCAAAATGAACt > 1:31040897/1‑67 (MQ=255) agCTGATTGCCCGTGCGATCCATAATCTCAGTGGGCGTAATAATCGCCGCATGGTCAAAATGAACTgc > 1:12702750/1‑68 (MQ=255) agCTGATTGCCCGTGCGATCCATAATCTCAGTGGGCGTAATAATCGCCGCATGGTCAAAATGAACTgc > 1:12098409/1‑68 (MQ=255) agCTGATTGCCCGTGCGATCCATAATCTCAGTGGGCGTAATAATCGCCGCATGGTCAAAATGAACTgc > 1:29550707/1‑68 (MQ=255) agCTGATTGCCCGTGCGATCCATAATCTCAGTGGGCGTAATAATCGCCGCATGGTCAAAATGAACTgc > 1:30673374/1‑68 (MQ=255) agCTGATTGCCCGTGCGATCCATAATCTCAGTGGGCGTAATAATCGCCGCATGGTCAAAATGAACTgc > 1:25377647/1‑68 (MQ=255) agCTGATTGCCCGTGCGATCCATAATCTCAGTGGGCGTAATAATCGCCGCATGGTCAAAATGAACTgc > 1:25065291/1‑68 (MQ=255) agCTGATTGCCCGTGCGATCCATAATCTCAGTGGGCGTAATAATCGCCGCATGGTCAAAATGAACTgc > 1:22748466/1‑68 (MQ=255) gCTGATTGCCCGTGCGATCCATAATCTCAGTGGGCGTAATAATCGCCGCATGGTCAAAATGAACTgc > 1:19611366/1‑67 (MQ=255) gCTGATTGCCCGTGCGATCCATAATCTCAGTGGGCGTAATAATCGCCGCATGGTCAAAATGAACTgc > 1:14648801/1‑67 (MQ=255) gCTGATTGCCCGTGCGATCCATAATCTCAGTGGGCGTAATAATCGCCGCATGGTCAAAATGAACTgc > 1:23091038/1‑67 (MQ=255) gATTGCCCGTGCGATCCATAATCTCAGTGGGCGTAATAATCGCCGCATGGTCAAAATGAACTGCgcgg > 1:20938045‑M2/1‑64 (MQ=255) ttGCCCGTGCGATCCATAATCTCAGTGGGCGTAATAATCGCCGCATGGTCAAAATGAACTGCgcggcg < 1:26311465‑M2/68‑7 (MQ=255) gCCCGTGCGATCCATAATCTCAGTGGGCGTAATAATCGCCGCATGGTCAAAATGAACTGCgcggcgat < 1:35136326‑M2/68‑9 (MQ=255) gCCCGTGCGATCCATAATCTCAGTGGGCGTAATAATCGCCGCATGGTCAAAATGAACTGCgcggcgat < 1:15799660‑M2/68‑9 (MQ=255) gTGCGATCCATAATCTCAGTGGGCGTAATAATCGCCGCATGGTCAAAATGAACTGCGCGGCGAtgcct < 1:7788811/68‑1 (MQ=255) gTGCGATCCATAATCTCAGTGGGCGTAATAATCGCCGCATGGTCAAAATGAACTGCGCGGCGAtgcct < 1:35765542/68‑1 (MQ=255) gCGATCCATAATCTCAGTGGGCGTAATAATCGCCGCATGGTCAAAATGAACTGCGCGGCGAtgcctgc < 1:29260006/68‑1 (MQ=255) gATCCATAATCTCAGTGGGCGTAATAATCGCCGCATGGTCAAAATGAACTGCGCGGCGATGCCTGCCg > 1:17394850/1‑68 (MQ=255) aTCTCAGTGGGCGTAATAATCGCCGCATGGTCAAAATGAACTGCGCGGCGATGCCTGCCGGATTGCTg > 1:28579393/1‑68 (MQ=255) aTCTCAGTGGGCGTAATAATCGCCGCATGGTCAAAATGAACTGCGCGGCGATGCCTGCCGGATTGCTg > 1:26791681/1‑68 (MQ=255) aTCTCAGTGGGCGTAATAATCGCCGCATGGTCAAAATGAACTGCGCGGCGATGCCTGCCGGATTGCTg > 1:26527559/1‑68 (MQ=255) aTCTCAGTGGGCGTAATAATCGCCGCATGGTCAAAATGAACTGCGCGGCGATGCCTGCCGGATTGCTg > 1:22215981/1‑68 (MQ=255) aTCTCAGTGGGCGTAATAATCGCCGCATGGTCAAAATGAACTGCGCGGCGATGCCTGCCGGATTGCTg > 1:8350549/1‑68 (MQ=255) aTCTCAGTGGGCGTAATAATCGCCGCATGGTCAAAATGAACTGCGCGGCGATGCCTGCCGGATTGCTg > 1:36762264/1‑68 (MQ=255) aTCTCAGTGGGCGTAATAATCGCCGCATGCTCAAAATGAACTGCgcggcgattattacgcccactgag > 1:4770196‑M2/1‑44 (MQ=255) aTCTCAGGGGGCGTAATAATCGCCGCATGGGCAAAATGAACTGCgcggcgattattacgcccactgag > 1:30341316‑M2/1‑44 (MQ=255) tctcAGTGGGCGTAATAATCGCCGCgcagttcattttgaccatgcggcgattattacgcccgctgaga > 1:15721586‑M1/1‑25 (MQ=255) tctcAGTGGGCGTAATAATCGCCGCgcagttcattttgaccatgcggcgattattacgcccactgaga > 1:9535708‑M1/1‑25 (MQ=255) tctcAGTGGGCGTAATAATCGCCGCATGGTCAAAATGAACTGCgcggcgattattacgcccactgaga > 1:24840608‑M2/1‑43 (MQ=255) tctcAGTGGGCGTAATAATCGCCGCATGGTCAAAATGAACTGCGCGGCGATGCCTGCCGGATTGCTgg > 1:9273926/1‑68 (MQ=255) tctcAGTGGGCGTAATAATCGCCGCATGGTCAAAATGAACTGCGCGGCGATGCCTGCCGGATTGCTgg > 1:13934436/1‑68 (MQ=255) tctcAGTGGGCGTAATAATCGCCGCATGGTCAAAATGAAATGCGCGGCGATGCCTGCCGGATTGCTgg > 1:22644601/1‑68 (MQ=255) tctcAGGGGGCGTAATAATCGCCGCATGGTCAAAATGAACTGCgcggcgattaatacgcccactgaga > 1:27437574‑M2/1‑43 (MQ=255) tctcAGGGGGCGTAATAATCGCCGCATGGTCAAAATCAACTGCgcggcgattattacgcccactgaga > 1:21833680‑M2/1‑43 (MQ=255) ctcAGTGGGCGTAATAATCGCCGCgcagttcattttgaccatgcggcgattattacgcccactgagat > 1:4481456‑M1/1‑24 (MQ=255) ctcAGTGGGCGTAATAATCGCCGCATGGTCAAAATGAACTGCGCGGCGATGCCTGCCGGATTGCTGGa > 1:23684971/1‑68 (MQ=255) ctcAGTGGGCGTAATAATCGCCGCATGGTCAAAATGAACTGCGCGGCGATGCCTGCCGGATTGCTGGa > 1:16704227/1‑68 (MQ=255) ctcAGTGGGCGTAATAATCGCCGCATGGTCAAAATGAACTGCGCGGCGATGCCTGCCGGATTGCTGGa > 1:32804282/1‑68 (MQ=255) ctcAGTGGGCGTAATAATCGCCGCATGGTCAAAATGAACTGCGCGGCGATGCCTGCCGGATTGCTGGa > 1:14361409/1‑68 (MQ=255) ctcAGTGGGCGTAATAATCGCCGCATGGTCAAAATGAACTGCGCGGCGATGCCTGCCGGATTGCTGGa > 1:1872318/1‑68 (MQ=255) ctcAGTGGGCGTAATAATCGCCGCATGGTCAAAATGAACTGCGCGGCGATGCCTGCAGGATTGCTGGa > 1:16077476/1‑68 (MQ=255) ctcAGTGGGCGTAATAATCGCCGCATGGTCAAAATGAACTGAGCGGCGGGGCATGCCGGATTGCTggt > 1:36116017/1‑67 (MQ=255) tGGGCGTAATAATCGCCGCATGGTCAAAATGAACTGCGCGGCGATGCCTGCCGGATTGCTGGAAAGCg > 1:3144571/1‑68 (MQ=255) tGGGCGTAATAATCGCCGCATGGTCAAAATGAACTGCGCGGCGATGCCTGCCGGATTGCTGGAAAGCg > 1:37080728/1‑68 (MQ=255) tGGGCGTAATAATCGCCGCATGGTCAAAATGAACTGCGCGGCGATGCCTGCCGGATTGCTGGAAAGCg > 1:12949132/1‑68 (MQ=255) tGGGCGTAATAATCGCCGCATGGTCAAAATGAACTGCGCGGCGATGCCTGCCGGATTGCTGGAAAGCg > 1:5868492/1‑68 (MQ=255) tGGGCGTAATAATCGCCGCATGGTCAAAATGAACTGCGCGGCGATGCCTGCCGGATTGCTGGAAAGCg > 1:11348529/1‑68 (MQ=255) gggCGTAATAATCGCCGCATGGTCAAAATGAACTGCGCGGCGATGCCTGCCGGATTGCTGGAAAGc < 1:18122546/66‑1 (MQ=255) ggCGTAATAATCGCCGCATGGTCAAAATGAACTGCGCGGCGATGCCTGCCGGATTGCTGGAAAGCGa > 1:36289625/1‑67 (MQ=255) cGTAATAATCGCCGCATGGTCAAAATGAACTGCGCGGCGATGCCTGCCGGATTGCTGGAAAGCGATc < 1:20527222/67‑1 (MQ=255) gTAATAATCGCCGCATGGTCAAAATGAACTGCGCGGCGATGCCTGCCGGATTGCTGGAAAGCGATCt < 1:31817910/67‑1 (MQ=255) gTAATAATCGCCGCATGGTCAAAATGAACTGCGCGGCGATGCCTGCCGGATTGCTGGAAAGCGATCt < 1:23349586/67‑1 (MQ=255) gTAATAATCGCCGCATGGTCAAAATGAACTGCGCGGCGATGCCTGCCGGATTGCTGGAAAGCGATCt < 1:21358226/67‑1 (MQ=255) gTAATAATCGCCGCATGGTCAAAATGAACTGCGCGGCGATCCCTGCCGGATTGCTGGAAAGCGATCt < 1:26106011/67‑1 (MQ=255) aataatCGCCGCTTGGTCAAAATGAACTGCGCGGCGATGCCTGCCGGATTGCTGGAAAGCGATCTGt < 1:17771138/67‑1 (MQ=255) aataatCGCCGCATGGTCAAAATGAACTGCGCGGCGATGCCTGCCGGATTGCTGGAAAGCGATCTGt < 1:20263623/67‑1 (MQ=255) aataatCGCCGCATGGTCAAAATGAACTGCGCGGCGATGCCTGCCGGATTGCTGGAAAGCGATCTGt < 1:10508876/67‑1 (MQ=255) aataatCGCCGCATGGTCAAAATGAACTGCGCGGCGATGCCTGCCGGATTGCTGGAAAGCGATCTGt < 1:11037259/67‑1 (MQ=255) aataatCGCCGCATGGTCAAAATGAACTGCGCGGCGATGCCTGCCGGATTGCTGGAAAGCGATCTGt < 1:3962577/67‑1 (MQ=255) aataatCGCCGCATGGTCAAAATGAACTGCGCGGCGATGCCTGCCGGATTGCTGGAAAGCGATCTGt < 1:18886690/67‑1 (MQ=255) aataatCGCCGCATGGTCAAAATGAACTGCGCGGCGATGCCTGCCGGATTGCTGGAAAGCGATCTGt < 1:33757954/67‑1 (MQ=255) ataatCGCCGCATGGTCAAAATGAACTGCGCGGCGATGCCTGCCGGATTGCTGGAAAGCGATCTGttt > 1:16995393/1‑68 (MQ=255) aatCGCCGCgcagttcattttgaccatgcggcgattattacgcccactgagattatggatcgcacgg > 1:29955626‑M1/1‑9 (MQ=255) aatCGCCGCATGGTCAAAATGAACTGCGCGGCGATGCCTGCCGGATTGCTGGAAAGCGATCTGTTTgg > 1:34748858/1‑68 (MQ=255) aatCGCCGCATGGTCAAAATGAACTGCGCGGCGATGCCTGCCGGATTGCTGGAAAGCGATCTGTTTgg < 1:3409804/68‑1 (MQ=255) aatCGCCGCATGGTCAAAATGAACTGCGCGGCGATGCCTGCCGGATTGCTGGAAAGCGATCTGTTTgg < 1:1358222/68‑1 (MQ=255) aatCGCCGCATGGTCAAAATGAACTGCGCGGCGATGCCTGCCGGATTGCTGGAAAGCGATCTGTTTgg < 1:11726740/68‑1 (MQ=255) aatCGCCGCATGGTCAAAATGAACTGCGCGGCGATGCCTGCCGGATTGCTGGAAAGCGATCTGTTTgg < 1:19216096/68‑1 (MQ=255) aatCGCCGCATGGTCAAAATGAACTGCGCGGCGATGCCTGCCGGATTGCTGGAAAGCGATCTGTTTgg < 1:668167/68‑1 (MQ=255) aatCGCCGCATGGTCAAAATGAACTGCGCGGCGATGCCTGCCGGATTGCTGGAAAGCGATCTGTTTgg < 1:21143118/68‑1 (MQ=255) aatCGCCGCATGGTCAAAATGAACTGCGCGGCGATGCCTGCCGGATTGCTGGAAAGCGATCTGTTTgg < 1:569337/68‑1 (MQ=255) atCGCCGCgcagttcattttgaccatgcggcgattattacgcccactgagattatggatcgcacgggc < 1:12281802‑M1/68‑61 (MQ=255) atCGCCGCgcagttcattttgaccatgcggcgattattacgcccactgagattatggatcgcacgggc < 1:34471474‑M1/68‑61 (MQ=255) atCGCCGCgcagttcattttgaccatgcggcgattattacgcccactgagattatggatcgcacgggc < 1:5385948‑M1/68‑61 (MQ=255) atCGCAGCgcagttcattttgaccatgcggcgattattacgcccactgagattatggatcgcacggg < 1:32381074‑M1/67‑60 (MQ=255) ATCGCCGCATGGTCAAAATGAACTGCGCGTCGATGCCTGCCTGATTTCTGTAAATAGATCTGTTTGGt > 1:5055862‑M1/1‑68 (MQ=255) ATCGCCGCATGGTCAAAATGAACTGCGCGGCGATGCCTGCCGGATTGCTGGAAAGCGATCTGTTTGGt > 1:33163765‑M1/1‑68 (MQ=255) ATCGCCGCATGGTCAAAATGAACTGCGCGGCGATGCCTGCCGGATTGCTGGAAAGCGATCTGTTTGGt > 1:13315299‑M1/1‑68 (MQ=255) ATCGCCGCATGGTCAAAATGAACTGCGCGGCGATGCCTGCCGGATTGCTGGAAAGCGATCTGTTTGGt > 1:24153937‑M1/1‑68 (MQ=255) cgccgcgcagttcattttgaccatgcggcgattattacgcccactgagattatggatcgcacgggcaa < 1:18514935‑M1/68‑63 (MQ=255) cgccgcgcagttcattttgaccatgcggcgattattacgcccactgagattatggatcgcacgggcaa < 1:8547050‑M1/68‑63 (MQ=255) CGCCGCATGGTCAAAATGAACTGCGCGGCGATGCCTGCCGGATTGCTGGAAAGCGATCTGTTTGGTCa < 1:27706281‑M1/68‑1 (MQ=255) ccgcgcagttcattttgaccatgcggcgattattacgcccactgagattatggatcgcacgggcaatc > 1:16453582‑M1/1‑4 (MQ=255) GCATGGTCAAAATGAACTGCGCGGCGATGCCTGCCGGATTGCTGGAAAGCGATCTGTTTGGTCATGAg > 1:22281898‑M1/1‑68 (MQ=255) | AACTGGCACGGGTAAAGAGCTGATTGCCCGTGCGATCCATAATCTCAGTGGGCGTAATAATCGCCGCATGGTCAAAATGAACTGCGCGGCGATGCCTGCCGGATTGCTGGAAAGCGATCTGTTTGGTCATGAG > CP009273/2848926‑2849058 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |