| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 2848992 | 428 (0.960) | 22 (0.060) | 7/96 | NT | 5.5% | coding (1296/2079 nt) | fhlA | formate hydrogenlyase transcriptional activator |
| ? | CP009273 | = 2849010 | 389 (1.020) | coding (1314/2079 nt) | fhlA | formate hydrogenlyase transcriptional activator | |||||
Only 100 of 579 total aligned reads displayed.
AGCTGATTGCCCGTGCGATCCATAATCTCAGTGGGCGTAATAATCGCCGCATGGTCAAAATGAACTGCGCGGCGATGCCTGCCGGATTGCTGGAAAGCGATCTGTTTGGTCATGAGCGTGGGGCTTTTACCGGT > CP009273/2848943‑2849076 | agCTGATTGCCCGTGCGATCCGTAGTCTCAGTGGGCGTAATAATCGCCGCATGGTCAAAATGAACTgc > 1:34321121/1‑68 (MQ=255)agCTGATTGCCCGTGCGATCCATAATCTCAGTGGGCGTATAAATCGCCGCATGGTCAAAATGAACTgc > 1:33164398/1‑68 (MQ=255)agCTGATTGCCCGTGCGATCCATAATCTCAGTGGGCGTAATAATCGCCGCATGGTCAAAATGAACTgc > 1:5703743/1‑68 (MQ=255)agCTGATTGCCCGTGCGATCCATAATCTCAGTGGGCGTAATAATCGCCGCATGGTCAAAATGAACTgc > 1:26711070/1‑68 (MQ=255)agCTGATTGCCCGTGCGATCCATAATCTCAGTGGGCGTAATAATCGCCGCATGGTCAAAATGAACTgc > 1:26377397/1‑68 (MQ=255)agCTGATTGCCCGTGCGATCCATAATCTCAGTGGGCGTAATAATCGCCGCATGGTCAAAATGAACTgc > 1:25065291/1‑68 (MQ=255)agCTGATTGCCCGTGCGATCCATAATCTCAGTGGGCGTAATAATCGCCGCATGGTCAAAATGAACTgc > 1:32311777/1‑68 (MQ=255)agCTGATTGCCCGTGCGATCCATAATCTCAGTGGGCGTAATAATCGCCGCATGGTCAAAATGAACTgc > 1:14604291/1‑68 (MQ=255)agCTGATTGCCCGTGCGATCCATAATCTCAGTGGGCGTAATAATCGCCGCATGGTCAAAATGAACTgc > 1:1419836/1‑68 (MQ=255)agCTGATTGCCCGTGCGATCCATAATCTCAGTGGGCGTAATAATCGCCGCATGGTCAAAATGAACTgc > 1:23956182/1‑68 (MQ=255) gCTGATTGCCCGTGCGATCCATAATCTCAGTGGGCGTAATAATCGCCGCATGGTCAAAATGAACTgc > 1:2952917/1‑67 (MQ=255) gATTGCCCGTGCGATCCATAATCTCAGTGGGCGTAATAATCGCCGCATGGTCAAAATGAACTGCgcgg > 1:20938045‑M2/1‑64 (MQ=255) ttccccGTGCGATCCATAATCTCAGTGGGCGTAATAATCGCCGCATGGTCAAAATCAACTGCgcggc < 1:21894135/64‑1 (MQ=255) tGCCCGTGCGATCCATAATCTCAGTGGGCGTAATAATCGCCGCATGGTCAAAATGAACTGCgcggcga < 1:27740959‑M2/68‑8 (MQ=255) cccGTGCGATCCATAATCTCAGTGGGCGTAATAATCGCCGCATGGTCAAAATGAACTGCgcggcgat < 1:26250758‑M2/67‑9 (MQ=255) cGTGCGATCCATAATCTCAGTGGGCGTAATAATCGCCGCATGGTCAAAATGAACTGCGCGGCGAtg > 1:19464998/1‑66 (MQ=255) gTGCGATCCATAATCTCAGTGGGCGTAATAATCGCCGCATGGTCAAAATGAACTGCGCGGCGAtgcct < 1:35765542/68‑1 (MQ=255) gTGCGATCCATAATCTCAGGGGGCGGAATAAGCGCCGCATGGGCAAAATGAACAGCGCGGCGAtgcct < 1:11676649/68‑1 (MQ=255) tGCGATCCATAATCTCAGTGGGCGTAATAATCGCCGCATGGTCAAAATGAACTGCGCGGCGAtgcct > 1:12142287/1‑67 (MQ=255) tGCGATCCATAATCTCAGTGGGCGTAATAATCGCCGCATGGTCAAAATGAACTGCGCGGCGAtgcct > 1:35324987/1‑67 (MQ=255) gCGATCCATAATCTCAGTGGGCGTAATAATCGCCGCATGGTCAAAATGAACTGCGCGGCGAtgcctg > 1:14704927/1‑67 (MQ=255) gATCCATAATCTCAGTGGGCGTAATAATCGCCGCATGGTCAAAATGAACTGCGCGGCGAtgcctgcc < 1:11305436/67‑1 (MQ=255) gATCCATAATCTCAGTGGGCGTAATAATCGCCGCATGGTCAAAATGAACTGCGCGGCGATGCCTGCCg > 1:32884450/1‑68 (MQ=255) gATCCATAATCTCAGTGGGCGTAATAATCGCCGCATGGTCAAAATGAACTGCGCGGCGATGCCTGCCg > 1:17394850/1‑68 (MQ=255) aTCCATAATCTCAGTGGGCGTAATAATCGCCGCATGGTCAAAATGAACTGCGCGGCGATGCCTGCCgg > 1:13527421/1‑68 (MQ=255) tAATCTCAGTGGGCGTAATAATCGCCGCATGGTCAAAATGAACTGCGCGGCGATGCCTGCCGGATTGc < 1:30731012/68‑1 (MQ=255) aaTCTCAGTGGGCGTAATAATCGCCGCATGGTCAAAATGAACTGCGCGGCGATGCCTGCCGGAtt > 1:15102059/1‑65 (MQ=255) aTCTCAGTGGGCGTAATAATCGCCGCATGGTCAAAATGAACTGCGCGGCGATGCCTGCCGGATTGCTg > 1:18402727/1‑68 (MQ=255) aTCTCAGTGGGCGTAATAATCGCCGCATGGTCAAAATGAACTGCGCGGCGATGCCTGCCGGATTGCTg > 1:28579393/1‑68 (MQ=255) aTCTCAGTGGGCGTAATAATCGCCGCATGGTCAAAATGAACTGCGCGGCGATGCCTGCCGGATTGCTg > 1:17089549/1‑68 (MQ=255) aTCTCAGTGGGCGTAATAATCGCCGCATGGTCAAAATGAACTGCGCGGCGATGCCTGCCGGATTGCTg > 1:31242237/1‑68 (MQ=255) aTCTCAGTGGGCGTAATAATCGCCGCATGGTCAAAATGAACTGCGCGGCGATGCCTGCCGGATTGCTg > 1:25364453/1‑68 (MQ=255) aTCTCAGTGGGCGTAATAATCGCCGCATGGTCAAAATGAACTGCGCGGCGATGCCTGCCGGATTGCTg > 1:31875621/1‑68 (MQ=255) aTCTCAGTGGGCGTAATAATCGCCGCATGGTCAAAATGAACTGCGCGGCGATGCCTGCCGGATTGCTg > 1:34044560/1‑68 (MQ=255) aTCTCAGTGGGCGTAATAATCGCCGCATGGTCAAAATGAACTGCGCGGCGATGCCTGCCGGATTGCTg > 1:22215981/1‑68 (MQ=255) aTCTCAGTGGGCGTAATAATCGCCGCATGCTCAAAATGAACTGCgcggcgattattacgcccactgag > 1:4770196‑M2/1‑44 (MQ=255) aTCTCAGGGGGCGTAATAATCGCCGCATGGGCAAAATGAACTGCgcggcgattattacgcccactgag > 1:30341316‑M2/1‑44 (MQ=255) tctcAGTGGGCGTAATAATCGCCGCATGGTCAAAATGAACTGCgcggcgattattacgcccactgaga > 1:9535708‑M2/1‑43 (MQ=255) tctcAGTGGGCGTAATAATCGCCGCATGGTCAAAATGAACTGCgcggcgattattacgcccactgaga > 1:24840608‑M2/1‑43 (MQ=255) tctcAGTGGGCGTAATAATCGCCGCATGGTCAAAATGAACTGCgcggcgattattacgcccactgaga > 1:23324879‑M2/1‑43 (MQ=255) tctcAGTGGGCGTAATAATCGCCGCATGGTCAAAATGAACTGCGCGGCGATGCCTGCCGGATTGCTgg > 1:8068494/1‑68 (MQ=255) tctcAGTGGGCGTAATAATCGCCGCATGGTCAAAATGAACTGCGCGGCGATGCCTGCCGGATTGCTgg > 1:1254580/1‑68 (MQ=255) tctcAGTGGGCGTAATAATCGCCGCATGGTCAAAATGAACTGCGCGGCGATGCCTGCCGGATTGCTgg > 1:18685379/1‑68 (MQ=255) tctcAGGGGGCGTAATAATCGCCGCATGGTCAAAATGAACTGCgcggcgattaatacgcccactgaga > 1:27437574‑M2/1‑43 (MQ=255) ctcAGTGGGCGTAATAATCGCCGCATGGTCAAAATGAACTGCGCGGCGATGCCTGCCGGATTGCTGGa > 1:10641292/1‑68 (MQ=255) ctcAGTGGGCGTAATAATCGCCGCATGGTCAAAATGAACTGCGCGGCGATGCCTGCCGGATTGCTGGa > 1:36253739/1‑68 (MQ=255) ctcAGTGGGCGTAATAATCGCCGCATGGTCAAAATGAACTGCGCGGCGATGCCTGCCGGATTGCTGGa > 1:34706224/1‑68 (MQ=255) ctcAGTGGGCGTAATAATCGCCGCATGGTCAAAATGAACTGCGCGGCGATGCCTGCCGGATTGCTGGa > 1:16704227/1‑68 (MQ=255) ctcAGTGGGCGTAATAATCGCCGCATGGTCAAAATGAACTGCGCGGCGATGCCTGCCGGATTGCTGGa > 1:26975413/1‑68 (MQ=255) ctcAGTGGGCGTAATAATCGCCGCATGGTCAAAATGAACTGCGCGGCGATCCCTGCCGGATTGCTGGa > 1:20743164/1‑68 (MQ=255) ctcAGTGGGCGTAATAATCGCCGCATGGTCAAAATGAACTCCGCGGCGATGCCTGCCGGATTCCAGGa > 1:24113308/1‑68 (MQ=255) tcAGTGGGCGTAATAATCGCCGCATGGTCAAAATGAACTGCGCGGCGATGCCTGCCGGATTGCTGGaa > 1:22737725/1‑68 (MQ=255) tcAGTGGGCGTAATAATCGCCGCATGGTCAAAATGAACTGCGCGGCGATGCCTGCCGGATTGCTGGaa < 1:6049219/68‑1 (MQ=255) aGTGGGCGTAATAATCGCCGCATGGTCAAAATGAACTGCGCGGCGATGCCTGCCGGATTGCTGGaaa > 1:13771255/1‑67 (MQ=255) tGGGCGTAATAATCGCCGCATGGTCAAAATGAACTGCGCGGCGATGCCTGCCGGATTGCTGGAAAGCg > 1:8381851/1‑68 (MQ=255) tGGGCGTAATAATCGCCGCATGGTCAAAATGAACTGCGCGGCGATGCCTGCCGGATTGCTGGAAAGCg > 1:5868492/1‑68 (MQ=255) tGGGCGTAATAATCGCCGCATGGTCAAAATGAACTGCGCGGCGATGCCTGCCGGATTGCTGGAAAGCg > 1:36303105/1‑68 (MQ=255) tGGGCGTAATAATCGCCGCATGGTCAAAATGAACTGCGCGGCGATGCCTGCCGGATTGCTGGAAAGCg > 1:35082982/1‑68 (MQ=255) cGTAATAATCGCCGCATGGTCAAAATGAACTGCGCGGCGATGCCTGCCGGATTGCTGGAAAGCGa > 1:9271150/1‑65 (MQ=255) gTAATAATCGCCGCATGGTCAAAATGAACTGCGCGGCGATGCCTGCCGGATTGCTGGAAAGCGATCt < 1:1916392/67‑1 (MQ=255) gTAATAATCGCCGCATGGTCAAAATGAACTGCGCGGCGATGCCTGCCGGATTGCTGGAAAGCGATCt < 1:21395088/67‑1 (MQ=255) gTAATAATCGCCGCATGGTCAAAATGAACTGCGCGGCGATGCCTGCCGGATTGCTGGAAAGCGATCt < 1:16116879/67‑1 (MQ=255) aataatCGCCGCATGGTCAAAATGAACTGCGCGGCGATGCCTGCCGGATTGCTGGAAAGCGATCTGt < 1:24558780/67‑1 (MQ=255) aataatCGCCGCATGGTCAAAATGAACTGCGCGGCGATGCCTGCCGGATTGCTGGAAAGCGATCTGt < 1:3790144/67‑1 (MQ=255) aataatCGCCGCATGGTCAAAATGAACTGCGCGGCGATGCCTGCCGGATTGCTGGAAAGCGATCTGt < 1:18886690/67‑1 (MQ=255) aataatCGCCGCATGGTCAAAATGAACTGCGCGGCGATGCCTGCCGGATTGCTGGAAAGCGATCTGt < 1:13199428/67‑1 (MQ=255) aataatCGCCGCATGGTCAAAATGAACTGCGCGGCGATGCCTGCCGGATTGCTGGAAAGCGATCTGt < 1:32757084/67‑1 (MQ=255) aataatCGCCGCATGGTCAAAATGAACTGCGCGGCGATGCCTGCCGGATTGCTGGAAAGCGATCTGt < 1:18055293/67‑1 (MQ=255) aataatCGCCGCATGGTCAAAATGAACTGCGCGGCGATGCCTGCCGGATTGCTGGAAAGCGATCTGt < 1:15891301/67‑1 (MQ=255) ataatCGCCGCATGGTCAAAATGAACTGCGCGGCGATGCCTGCCGGATTGCTGGAAAGCGATCTGttt < 1:20471190/68‑1 (MQ=255) ataatCGCCGCATGGTCAAAATGAACTGCGCGGCGATGCCTGCCGGATTGCTGGAAAGCGATCTGttt > 1:8889178/1‑68 (MQ=255) aatCGCCGCATGGTCAAAATGAACTGCGCGGCGATGCCTGCCGGATTGCTGGAAAGCGATCTGTTTgg < 1:21143118/68‑1 (MQ=255) aatCGCCGCATGGTCAAAATGAACTGCGCGGCGATGCCTGCCGGATTGCTGGAAAGCGATCTGTTTgg < 1:28164932/68‑1 (MQ=255) aatCGCCGCATGGTCAAAATGAACTGCGCGGCGATGCCTGCCGGATTGCTGGAAAGCGATCTGTTTgg < 1:16372312/68‑1 (MQ=255) aatCGCCGCATGGTCAAAATGAACTGCGCGGCGATGCCTGCCGGATTGCTGGAAAGCGATCTGTTTgg > 1:31762698/1‑68 (MQ=255) ATCGCCGCATGGTCAAAATGAACTGCGCGTCGATGCCTGCCTGATTTCTGTAAATAGATCTGTTTGGt > 1:5055862‑M1/1‑68 (MQ=255) ATCGCCGCATGGTCAAAATGAACTGCGCGGCGATGCCTGCCGGATTGCTGGAAAGCGATCTGTTTGGt > 1:15621154‑M1/1‑68 (MQ=255) TCGCCGCATGGTCAAAATGAACTGCGCGGCGATGCCTGCCGGATTGCTGGAAAGCGATCTGTTTGGTc > 1:4328469‑M1/1‑68 (MQ=255) CCGCATGGTCAAAATGAACTGCGCGGCGATGCCTGCCGGATTGCTGGAAAGCGATCTGTTTGGTCATg < 1:12931309‑M1/68‑1 (MQ=255) GCATGGTCAAAATGAACTGCGCGGCGATGCCTGCCGGATTGCTGGAAAGCGATCTGTTTGGTCATGAg > 1:22620028‑M1/1‑68 (MQ=255) aTGGTCAAAATGAACTGCGCGGCGATGCCTGCCGGATTGCTGGAAAGCGATCTGTTTGGTCATGAGc < 1:2991838/67‑1 (MQ=255) cAAAATGAACTGCGCGGCGATGCCTGCCGGATTGCTGGAAAGCGATCTGTTTGGTCATGAGCGTgtgg < 1:23020208/68‑1 (MQ=255) cAAAATGAACTGCGCGGCGATGCCTGCCGGATTGCTGGAAAGCGATCTGTTTGGTCATGAGCGTgggg < 1:10219954/68‑1 (MQ=255) cAAAATGAACTGCGCGGCGATGCCTGCCGGATTGCTGGAAAGCGATCTGTTTGGTCATGAGCGTgggg < 1:7659753/68‑1 (MQ=255) cAAAATGAACTGCGCGGCGATGCCTGCCGGATTGCTGGAAAGCGATCTGTTTGGTCATGAGCGTgggg < 1:37108056/68‑1 (MQ=255) aaaaTGAACTGCGCGGCGATGCCTGCCGGATTGCTGGAAAGCGATCTGTTTGGTCATGAGCGTGGGGc < 1:36815813/68‑1 (MQ=255) aaaaTGAACTGCGCGGCGATGCCTGCCGGATTGCTGGAAAGCGATCTGTTTGGTCATGAGCGTGGGGc < 1:23524291/68‑1 (MQ=255) aaaaTGAACTGCGCGGCGATGCCTGCCGGATTGCTGGAAAGCGATCTGTTTGGTCATGAGCGTGGGGc < 1:12692704/68‑1 (MQ=255) aaaaTGAACTGCGCGGCGATGCCAGCCGGATTGCTGGAAAGCGATCTGTTTGGTCATGAGCGTgggg < 1:7051413/67‑1 (MQ=255) aaTGAACTGCGCGGCGATGCCTGCCGGATTGCTGGAAAGCGATCTGTTTGGTCATGAGCGTGGGGCtt < 1:25775689/68‑1 (MQ=255) aaTGAACTGCGCGGCGATGCCTGCCGGATTGCTGGAAAGCGATCTGTTTGGGCATGAGCGTGGGGCtt < 1:17695910/68‑1 (MQ=255) aTGAACTGCGCGGCGATGCCTGCCGGATTGCTGGAAAGCGATCTGTTTGGTCATGAGCGTGGGGCttt > 1:19790855/1‑68 (MQ=255) tGAACTGCGCGGCGATGCCTGCCGGATTGCTGGGAAGCGATCTGTTTGGTCATGAGCGTGGGGCtttt > 1:36105954/1‑68 (MQ=255) tGAACTGCGCGGCGATGCCTGCCGGATTGCTGGAAAGCGATCTGTTTGGTCATGAGCGTGGGGCtttt > 1:10464539/1‑68 (MQ=255) tGAACTGCGCGGCGATGCCTGCCGGATTGCTGGAAAGCGATCTGTTTGGTCATGAGCGTGGGGCtttt > 1:6518197/1‑68 (MQ=255) tGAACTGCGCGGCGATGCCTGCCGGATTGCTGGAAAGCGATCTGTTTGGTCATGAGCGTGGGGCtttt > 1:11826544/1‑68 (MQ=255) tGAACTGCGCGGCGATGCCTGCCGGATTGCTGGAAAGCGATCTGTTTGGTCATGAGCGTGGGGCtttt > 1:3362042/1‑68 (MQ=255) aaCTGCGCGGCGATGCCTGCCGGATTGCTGGAAAGCGATCTGTTTGGTCATGAGCGTGGGGCTTTTa > 1:5206182/1‑67 (MQ=255) aaCTGAGCGGCGCAGCCTGCAGGTTTGCTGGAAAGCGATCTGTTTGGTCATGAGCGTGGGGCttttg > 1:29010205/1‑66 (MQ=25) gcgcGGCGATGCCTGCCGGATTGCTGGAAAGCGATCTGTTTGGTCATGAGCGTGGGGCTTTTACCGGt < 1:22348997/68‑1 (MQ=255) | AGCTGATTGCCCGTGCGATCCATAATCTCAGTGGGCGTAATAATCGCCGCATGGTCAAAATGAACTGCGCGGCGATGCCTGCCGGATTGCTGGAAAGCGATCTGTTTGGTCATGAGCGTGGGGCTTTTACCGGT > CP009273/2848943‑2849076 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |