New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 3133702 =412 (0.930)16 (0.040) 11/96 NT 5.1% coding (457/489 nt) hybE hydrogenase 2‑specific chaperone
?CP009273 3133721 = 246 (0.640)coding (438/489 nt) hybE hydrogenase 2‑specific chaperone

Only 100 of 509 total aligned reads displayed.

GGATAATTTCAACGGCGCTCTGGCAAAGAGACAACTCATGCATTTTCGCCACTCCTGCGACCAAACAGCAGGGCGCGACGCCCTGCGTGTGGTACATCCGGATTCGTGACTGGCAGCGAAAGGATCATTCGTGC  >  CP009273/3133635‑3133768
                                                                   |                                                                  
 cgcctgacggatgactgcgcacgaatgatcctttcgctgccagtcacgcatccgggtgtaccccacg                                                                    <  1:11197343‑M1/1‑1 (MQ=255)
 cgcctgacggatgactgcgcacgaatgatcctttcgctgccagtcacgaatccggatgtaccacacGc                                                                   <  1:35066355‑M1/2‑1 (MQ=255)
    aaTTTCAACGGCGCTCTGGCAAAGAGACAACTCATGCATTTTCGCCACTCCTGCGACCAAACAGCAgg                                                                <  1:9556542/68‑1 (MQ=255)
    aaTTTCAACGGCGCTCTGGCAAAGAGACAACTCATGCATTTTCGCCACTCCTGCGACCAAACAGCAgg                                                                <  1:36794700/68‑1 (MQ=255)
    aaTTTCAACGGCGCTCTGGCAAAGAGACAACTCATGCATTTTCGCCACTCCTGCGACCAAACAGCAgg                                                                <  1:34125116/68‑1 (MQ=255)
    aaTTTCAACGGCGCTCTGGCAAAGAGACAACTCATGCATTTTCGCCACTCCTGCGACCAAACAGCAgg                                                                <  1:31291889/68‑1 (MQ=255)
      tttCAACGGCGCTCTGGCAAAGAGACAACTCATGCATTTTCGCCACTCCTGCGACCAAACAGCAGGgc                                                              <  1:10537084/68‑1 (MQ=255)
      tttCAACGGCGCTCTGGCAAAGAGACAACTCATGCATTTTCGCCACTCCTGCGACCAAACAGCAGGgc                                                              <  1:29198789/68‑1 (MQ=255)
      tttCAACGGCGCTCTGGCAAAGAGACAACTCATGCATTTTCGCCACTCCTGCGACCAAACAGCAGGgc                                                              <  1:11360645/68‑1 (MQ=255)
       ttCAACGGCGCTCTGGCAAAGAGACAACTCATGCATTTTCGCCACTCCTGCGACCAAACAGCAGGgc                                                              >  1:26864514/1‑67 (MQ=255)
       ttCAACGGCGCTCTGGCAAAGAGACAACTCATGCATTTTCGCCACTCCTGCGACCAAACAGCAGGgc                                                              >  1:28809597/1‑67 (MQ=255)
       acggatgactgcgcacgaatgatcctttcgctgccagtcacgaatccggatgtaccacacGCAGGgcg                                                             <  1:14688736‑M1/8‑1 (MQ=255)
        tCAACGGCGCTCTGGCAAAGAGACAACTCATGCATTTTCGCCACTCCTGCGACCAAACAGCAGGgcgc                                                            >  1:17017041/1‑68 (MQ=255)
        cggatgactgcgcacgaatgatcctttcgctgccagtcacgaatccggatgtaccacacGCAGGgcg                                                             <  1:8256801‑M1/8‑1 (MQ=255)
           aCGGCGCTCTGGCAAAGAGCCAACTCATGCATTTTCGCCACTCCTGCGACCAAACAGCAGGGCGCGAc                                                         >  1:17820557/1‑68 (MQ=255)
           aCGGCGCTCTGGCAAAGAGACAACTCATGCATTTTCGCCACTCCTGCGACCAAACAGCAGGGCGCGAc                                                         <  1:27893837/68‑1 (MQ=255)
            cGGCGCTCTGGCAAAGAGACAACTCATGCATTTTCGCCACTCCTGCGACCAAACAGCAGGGCGCGACg                                                        <  1:6800922/68‑1 (MQ=255)
             ggCGCTCTGGCAAAGAGACAACTCATGCATTTTCGCCACTCCTGCGACCAAACAGCAGGGCGCGAct                                                        >  1:5252738/1‑66 (MQ=255)
             ggCGCTCTGGCAAAGAGACAACTCATGCATTTTCGCCACTCCTGCGACCAAACAGCAGGGCGCGACg                                                        >  1:14193536/1‑67 (MQ=255)
             ggCGCTCTGGCAAAGAGACAACTCATGCATTTTCGCCACTCCTGCGACCAAACAGCAGGGCGCGACg                                                        >  1:4946438/1‑67 (MQ=255)
             ggCGCTCTGGCAAAGAGACAACTCATGCATTTTCGCCACTCCTGCGACCAAACAGCAGGGCGCGACg                                                        >  1:19279877/1‑67 (MQ=255)
             ggCGCTCTGGCAAAGAGACAACTCATGCATTTTCGCCACTCCTGCGACCAAACAGCAGGGCGCGACGc                                                       <  1:28578499/68‑1 (MQ=255)
             ggCGCTCTGGCAAAGAGACAACTCATGCATTATCGCCACTCCTGCGACCAACCAGCAGGGCGCGACGc                                                       <  1:2071481/68‑1 (MQ=255)
               cgcTCTGGCAAAGAGACAACTCATGCATTTTCGCCACTCCTGCGACCAAACAGCAGGGCGCGACGcc                                                      <  1:29624911/67‑1 (MQ=255)
               cgcTCTGGCAAAGAGACAACTCATGCATTTTCGCCACTCCTGCGACCAAACAGCAGGGCGCGACGcc                                                      <  1:4485211/67‑1 (MQ=255)
               cgcTCTGGCAAAGAGACAACTCATGCATTTTCGCCACTCCTGCGACCAAACAGCAGGGCGCGACGcc                                                      <  1:25806115/67‑1 (MQ=255)
               cgcTCTGGCAAAGAGACAACTCATGCATTTTCGCCACTCCTGCGACCAAACAGCAGGGCGCGACGcc                                                      <  1:13029247/67‑1 (MQ=255)
               cgcTCTGGCAAAGAGACAACTCATGCATTTTCGCCACTCCTGCGACCAAACAGCAGGGCGCGACGcc                                                      <  1:15721743/67‑1 (MQ=255)
               cgcTCTGGCAAAGAGACAACTCATGCATTTTCGCCACTCCTGCGACCAAACAGCAGGGCGCGACGcc                                                      <  1:1645350/67‑1 (MQ=255)
                gcgctGGCAAAGAGACAACTCATGCATTTTCGCCACTCCTGCGACCAAACAGCAGGGCGCGACGccc                                                     <  1:2272939/64‑1 (MQ=255)
                  tctGGCAAAGAGACAACTCATGCATTTTCGCCACTCCTGCGACCAAACAGCAGGGCGCGACGCCCTGc                                                  <  1:34621573/68‑1 (MQ=255)
                  tctGGCAAAGAGACAACTCATGCATTTTCGCCACTCCTGCGACCAAACAGCAGGGCGCGACGCCCTGc                                                  <  1:31928337/68‑1 (MQ=255)
                  tctGGCAAAGAGACAACTCATGCATTTTCGCCACTCCTGCGACCAAACAGCAGGGCGCGACGCCCTGc                                                  <  1:6553135/68‑1 (MQ=255)
                  tctGGCAAAGAGACAACTCATGCATTTTCGCCACTCCTGCGACCAAACAGCAGGGCGCGACGCCCTGc                                                  <  1:9048991/68‑1 (MQ=255)
                  tctGGCAAAGAGACAACTCATGCATTTTCGCCACTCCTGCGACCAAACAGCAGGGCGCGACGCCCTGc                                                  <  1:25093289/68‑1 (MQ=255)
                  tctGGCAAAGAGACAACTCATGCATTTTCGCCACTCCTGCGACCAAACAGCAGGGCGCGACGCCCTGc                                                  <  1:23481254/68‑1 (MQ=255)
                  gcacgaatgatcctttcgctgccagtcacgaatccggatgtaccaaacaGCAGGGCGCGACGCCCTGc                                                  >  1:22435882‑M1/50‑68 (MQ=255)
                   ctGGCAAAGAGACAACTCATGCATTTTCGCCACTCCTGCGACCAAACAGCAGGGCGCGACGCCCTGct                                                 <  1:35784295/68‑2 (MQ=255)
                   ctGGCAAAGAGACAACTCATGCATTTTCGCCACTCCTGCGACCAAACAGCAGGGCGCGACGCCCTGCg                                                 <  1:7579476/68‑1 (MQ=255)
                    tGGCAAAGAGACAACTCATGCATTTTCGCCACTCCTGCGACCAAACAGCAGGGCGCTACGCCCTGCgt                                                <  1:24942420/68‑1 (MQ=255)
                    tGGCAAAGAGACAACTCATGCATTTTCGCCACTCCTGCGACCAAACAGCAGGGCGCGACGCCCTGCgt                                                <  1:3349731/68‑1 (MQ=255)
                    tGGCAAAGAGACAACTCATGCATTTTCGCCACTCCTGCGACCAAACAGCAGGGCGCGACGCCCTGCgt                                                <  1:30511975/68‑1 (MQ=255)
                    tGGCAAAGAGACAACTCATGCATTTTCGCCACTCCTGCGACCAAACAGCAGGGCGCGACGCCCTGCgt                                                <  1:12246959/68‑1 (MQ=255)
                    tGGCAAAGAGACAACTCATGCATTTTCGCCACTCCTGCGACCAAACAGCAGGGCGCGACGCCCTGCgt                                                <  1:15430144/68‑1 (MQ=255)
                    tGGCAAAGAGACAACTCATGCATTTTCGCCACTCCTGCGACCAAACAGCAGGGCGCGACGCCCTGCgt                                                <  1:926386/68‑1 (MQ=255)
                    tGGCAAAGAGACAACTCATGCATTTTCGCCACTCCTGCGACCAAACAGCAGGGCGCGACGCCCTGCgt                                                <  1:24085369/68‑1 (MQ=255)
                    tGGCAAAGAGACAACTCATGCATTTTCGCCACTCCTGCGACCAAACAGCAGGGCGCGACGCCCTGCgt                                                <  1:18074940/68‑1 (MQ=255)
                    tGGCAAAGAGACAACTCATGCATTTTCGCCACTCCTGCGACCAAACAGCAGGGCGCGACGCCCTGCgt                                                <  1:18440392/68‑1 (MQ=255)
                    tGGCAAAGAGACAACTCATGCATTTTCGCCACTCCTGCGACCAAACAGCAGGGCGCGACGCCCTGCgt                                                <  1:16870726/68‑1 (MQ=255)
                    tGGCAAAGAGACAACTCATGCATTTTCGCCACTCCTGCGACCAAACAGCAGGGCGCGACGCCCTGCgt                                                <  1:21641531/68‑1 (MQ=255)
                     acgaatgatcctttcgctgccagtcacgaatccggatgtaccacacGCAGGGCGCGACGCCCTGCgt                                                >  1:20287127‑M1/47‑67 (MQ=255)
                        aaaGAGACAACTCATGCATTTTCGCCACTCCTGCGACCAAACAGCAGGGCGCGACGCCCTGCGtgtg                                             <  1:19526209/67‑1 (MQ=255)
                        aaaGAGACAACTCATGCATTTTCGCCACTCCTGCGACCAAACAGCAGGGCGCGACGCCCTGCGTGTgg                                            <  1:10863592/68‑1 (MQ=255)
                         atgatcctttcgctgccagtcacgaatccggatgtaccacacGCAGGGCGCGACGCCCTGCGTGTGGt                                           >  1:7168873‑M1/43‑68 (MQ=255)
                          tgatcctttcgcttccagtcacgaatccggatgtaccacccGCAGGGCGCTACGCCCTGCGTGTGGTa                                          >  1:31766672‑M1/42‑68 (MQ=255)
                          agagACAACTCATGCATTTTCGCCACTCCTGCGACCAAACAGCAGGGCGCGACGCCCTGCGTGTGGt                                           >  1:2444802/1‑67 (MQ=255)
                            agaCAACTCATGCATTTTCGCCACTCCTGCGACCAAACAGCAGGGCTCGACGCCCTGCGTGTGGTACa                                        >  1:1890172/1‑68 (MQ=255)
                            agaCAACTCATGCATTTTCGCCACTCCTGCGACCAAACAGCAGGGCGCGACGCCCTGCGTGTGGTACa                                        >  1:13709917/1‑68 (MQ=255)
                            agaCAACTCATGCATTTTCGCCACTCCTGCGACCAAACAGCAGGGCGCGACGCCCTGCGTGTGGTACa                                        >  1:17637756/1‑68 (MQ=255)
                               cAACTCATGCATTTTCGCCACTCCTGCGACCAAACAGCAGGGCGCGACGCCCTGCGTGTGGTACAt                                       <  1:26694293/66‑1 (MQ=255)
                               cAACTCATGCATTTTCGCCACTCCTGCGACCAAACAGCAGGGCGCGACGCCCTGCGTGTGGTACAt                                       <  1:5984658/66‑1 (MQ=255)
                               cAACTCATGCATTTTCGCCACTCCTGCGACCAAACAGCAGGGCGCGACGCCCTGCGTGTGGTACAt                                       <  1:8111380/66‑1 (MQ=255)
                                 aCTCATGCATTTTCGCCACTCCTGCGACCAAACAGCAGGGCGTCGCGCCCTGCGTGTGGTACATCCgg                                   >  1:1212545/1‑68 (MQ=39)
                                 aCTCATGCATTTTCGCCACTCCTGCGACCAAACAGCAGGGCGCGACGCCCTGCGTGTGGTACATCCgg                                   >  1:15095774/1‑68 (MQ=255)
                                 aCTCATGCATTTTCGCCACTCCTGCGACCAAACAGCAGGGCGCGACGCCCTGCGTGTGGTACATCCgg                                   >  1:26053876/1‑68 (MQ=255)
                                 aCTCATGCATTTTCGCCACTCCTGCGACCAAACAGCAGGGCGCGACGCCCTGCGTGTGGTACATCCgg                                   >  1:7993609/1‑68 (MQ=255)
                                 aCTCATGCATTTTCGCCACTCCTGCGACCAAACAGCAGGGCGCGACGCCCTGCGTGTGGTACATCCgg                                   >  1:13434925/1‑68 (MQ=255)
                                 aCTCATGCATTTTCGCCACTCCTGCGACCAAACAGCAGGGCGCGACGCCCTGCGTGTGGTACATCCgg                                   <  1:3692884/68‑1 (MQ=255)
                                  cTCATGCATTTTCGCCACTCCTGCGACCAAACAGCAGGGCGCGACGCCCTGCGTGTGGTACATCCGGa                                  >  1:23181503/1‑68 (MQ=255)
                                  cTCATGCATTTTCGCCACTCCTGCGACCAAACAGCAGGGCGCGACGCCCTGCGTGTGGTACATCCGGa                                  >  1:8724946/1‑68 (MQ=255)
                                  cTCATGCATTTTCGCCACTCCTGCGACCAAACAGCAGGGCGCGACGCCCTGCGTGTGGTACATCCGGa                                  >  1:375803/1‑68 (MQ=255)
                                    cATGCATTTTCACCACTCCTGCGACCAAACAGCAGGGCGCGCCGCCCTGCGTGTGGTACATCCGGAt                                 >  1:2209193/1‑67 (MQ=255)
                                      tGCATTTTCGCCACTCCTGCGACCAAACAGCAGGGCGCGACGCCCTGCGTGTGGTACATCCGGATTCg                              >  1:32362706/1‑68 (MQ=255)
                                       gCATTTTCGCCACTCCTGCGACCAAACAGCAGGGCGCGACGCCCTGCGTGTGGTACATCCGGATTCGt                             <  1:7407417/68‑1 (MQ=255)
                                        cATTTTCGCCACTCCTGCGACCAAACAGCAGGGCGCGACGCCCTGCGTGTGGTACATCCGGATTCGTg                            >  1:14373314/1‑68 (MQ=255)
                                         aTTTTCGCCACTCCTGCGACCAAACAGCAGGGCGCGACGCCCTGCGTGTGGTACATCCGGATTCGTg                            >  1:35395562/1‑67 (MQ=255)
                                         aTTTTCGCCACTCCTGCGACCAAACAGCAGGGCGCGACGCCCTGCGTGTGGTACATCCGGATTCGTg                            >  1:22873580/1‑67 (MQ=255)
                                         aTTTTCGCCACTCCTGCGACCAAACAGCAGGGCGCGACGCCCTGCGTGTGGTACATCCGGATTCGTg                            >  1:26410249/1‑67 (MQ=255)
                                         aTTTTCGCCACTCCTGCGACCAAACAGCAGGGCGCGACGCCCTGCGTGTGGTACATCCGGATTCGTg                            >  1:19337735/1‑67 (MQ=255)
                                                ccACTCCTGCGACCAAACAGCAGGGCGCGACGCCCTGCGTGTGGTACATCCGGATTCGTGACTGGCa                     >  1:3616303/1‑67 (MQ=255)
                                                 cACTCCTGCGACCAAACAGCAGGGCGCGACGCCCTGCGTGTGGTACATCCGGATTCGTGACTGGCAGc                   <  1:3978817/68‑1 (MQ=255)
                                                  aCTCCTGCGACCAAACAGCAGGGCGCGACGCCCTGCGTGTGGTACATCCGGATTCGTGACTGGCAGCg                  <  1:13184930/68‑1 (MQ=255)
                                                  aCTCCTGCGACCAAACAGCAGGGCGCGACGCCCTGCGTGTGGTACATCCGGATTCGTGACTGGCAGCg                  <  1:32742121/68‑1 (MQ=255)
                                                  aCTCCTGCGACCAAACAGCAGGGCGCGACGCCCTGCGTGTGGTACATCCGGATTCGTGACTGGCAGCg                  <  1:19930222/68‑1 (MQ=255)
                                                    ccggatgtaccacacGCAGGGCGCGACGCCCGGCGTGTGGTACATCCGGATTCGTGACTGGCAGCGaa                <  1:30816300‑M1/53‑1 (MQ=255)
                                                     ccTGCGACCAAACAGCAGGGCGCGACGCCCTGCGTGTGGTACATCCGGATTCGTGACTGGCAGCGaaa               >  1:33849047/1‑68 (MQ=255)
                                                      cTGGGACCATACAGCTGGGCGCGACGCCCTGCGTGTGGTACATCCGGATTCGTGACTGGCAGCGAAAg              <  1:11831383/68‑1 (MQ=255)
                                                      cTGCGACCAAACAGCAGGGCGCGACGCCCTGCGTGTGGTACATCCGGATTCGTGACTGGCAGCGAAAg              <  1:16178281/68‑1 (MQ=255)
                                                       tGCGACCAAACAGCAGGGCGCGACGCCCTGCGTGTGGTACATCCGGATTCGTGACTGGCAGCGAAAgg             <  1:27228948/68‑1 (MQ=255)
                                                        gCGACCAAACAGCAGGGCGCGACGCCCTGCGTGTGGTACATCCGGATTCGTGACTGGCAGCGAAAGGa            <  1:12649336/68‑1 (MQ=255)
                                                          gACCAAACAGCAGGGCGCGACGCCCTGCGTGTGGTACATCCGGATTCGTGACTGGCAGCGAAAGGATc          >  1:32169915/1‑68 (MQ=255)
                                                            ccAAACAGCAGGGCGCGACGCCCTGCGTGTGGTACATCCGGATTCGTGACTGGCAGCGAAAGGATCa         <  1:30148734/67‑1 (MQ=255)
                                                            ccAAACAGCAGGGCGCGACGCCCTGCGTGTGGTACATCCGGATTCGTGACTGGCAGCGAAAGGATCAt        >  1:697450/1‑68 (MQ=255)
                                                            ccAAACAGCAGGGCGCGACGCCCTGCGTGTGGTACATCCGGATTCGTGACTGGCAGCGAAAGGATCAt        >  1:2107943/1‑68 (MQ=255)
                                                            ccAAACAGCAGGGCGCGACGCCCTGCGTGTGGTACATCCGGATTCGTGACTGGCAGCGAAAGGATCAt        >  1:1581124/1‑68 (MQ=255)
                                                             cAAACAGCAGGGCGCGACGCCCTGCGTGTGGTACATCCGGATTCGTGACTGGCAGCGAAAGGATCAtt       <  1:33050164/68‑1 (MQ=255)
                                                             cAAACAGCAGGGCGCGACGCCCTGCGTGTGGTACATCCGGATTCGTGACTGGCAGCGAAAGGAGCAtt       <  1:10157356/68‑1 (MQ=255)
                                                                aCAGCAGGGCGCGACGCCCTGCGTGTGGTACATCCGGATTCGTGACTGGCAGCGAAAGGATCATTCGt    >  1:15246524/1‑68 (MQ=255)
                                                                  agcagGGCGCGACGCCCTGCGTGTGGTACATCCGGATTCGTGACTGGCAGCGAAAGGATCATTCGTgc  >  1:5660472/1‑68 (MQ=255)
                                                                  agcagGGCGCGACGCCCTGCGTGTGGTACATCCGGATTCGTGACTGGCAGCGAAAGGATCATTCGTgc  >  1:2696988/1‑68 (MQ=255)
                                                                   |                                                                  
GGATAATTTCAACGGCGCTCTGGCAAAGAGACAACTCATGCATTTTCGCCACTCCTGCGACCAAACAGCAGGGCGCGACGCCCTGCGTGTGGTACATCCGGATTCGTGACTGGCAGCGAAAGGATCATTCGTGC  >  CP009273/3133635‑3133768

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.