New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 3133702 =412 (0.930)16 (0.040) 11/96 NT 5.1% coding (457/489 nt) hybE hydrogenase 2‑specific chaperone
?CP009273 3133721 = 246 (0.640)coding (438/489 nt) hybE hydrogenase 2‑specific chaperone

Only 100 of 488 total aligned reads displayed.

CTGGCAAAGAGACAACTCATGCATTTTCGCCACTCCTGCGACCAAACAGCAGGGCGCGACGCCCTGCGTGTGGTACATCCGGATTCGTGACTGGCAGCGAAAGGATCATTCGTGCGCAGTCATCCGTCAGGCGTT  >  CP009273/3133654‑3133788
                                                                   |                                                                   
 tGGCAAAGAGACAACTCATGCATTTTCGCCACTCCTGCGACCAAACAGCAGGGCGCTACGCCCTGCgt                                                                    <  1:24942420/68‑1 (MQ=255)
 tGGCAAAGAGACAACTCATGCATTTTCGCCACTCCTGCGACCAAACAGCAGGGCGCGACGCCCTGCgt                                                                    <  1:36952337/68‑1 (MQ=255)
 tGGCAAAGAGACAACTCATGCATTTTCGCCACTCCTGCGACCAAACAGCAGGGCGCGACGCCCTGCgt                                                                    <  1:26724692/68‑1 (MQ=255)
 tGGCAAAGAGACAACTCATGCATTTTCGCCACTCCTGCGACCAAACAGCAGGGCGCGACGCCCTGCgt                                                                    <  1:30511975/68‑1 (MQ=255)
 tGGCAAAGAGACAACTCATGCATTTTCGCCACTCCTGCGACCAAACAGCAGGGCGCGACGCCCTGCgt                                                                    <  1:33709069/68‑1 (MQ=255)
 tGGCAAAGAGACAACTCATGCATTTTCGCCACTCCTGCGACCAAACAGCAGGGCGCGACGCCCTGCgt                                                                    <  1:17701859/68‑1 (MQ=255)
 tGGCAAAGAGACAACTCATGCATTTTCGCCACTCCTGCGACCAAACAGCAGGGCGCGACGCCCTGCgt                                                                    <  1:16870726/68‑1 (MQ=255)
 tGGCAAAGAGACAACTCATGCATTTTCGCCACTCCTGCGACCAAACAGCAGGGCGCGACGCCCTGCgt                                                                    <  1:5229330/68‑1 (MQ=255)
 tGGCAAAGAGACAACTCATGCATTTTCGCCACTCCTGCGACCAAACAGCAGGGCGCGACGCCCTGCgt                                                                    <  1:14966232/68‑1 (MQ=255)
 tGGCAAAGAGACAACTCATGCATTTTCGCCACTCCTGCGACCAAACAGCAGGGCGCGACGCCCTGCgt                                                                    <  1:12969764/68‑1 (MQ=255)
 tGGCAAAGAGACAACTCATGCATTTTCGCCACTCCTGCGACCAAACAGCAGGGCGCGACGCCCTGCgt                                                                    <  1:926386/68‑1 (MQ=255)
 acgaatgatcctttcgctgccagtcacgaatccggatgtaccaaacaGCAGGGCGCGACGCCCTGCgt                                                                    >  1:10759530‑M1/48‑68 (MQ=255)
  acgaatgatcctttcgctgccagtcacgaatccggatgtaccacacGCAGGGCGCGACGCCCTGCgt                                                                    >  1:8068790‑M1/47‑67 (MQ=255)
     aaaGAGACAACTCATGCATTTTCGCCACTCCTGCGACCAAACAGCAGGGCGCGACGCCCTGCGTGTgg                                                                >  1:7014711/1‑68 (MQ=255)
     aaaGAGACAACTCATGCATTTTCGCCACTCCTGCGACCAAACAGCAGGGCGCGACGCCCTGCGTGTgg                                                                >  1:31296785/1‑68 (MQ=255)
      aaGAGACAACTCATGCATTTTCGCCACTCCTGCGACCAAACAGCAGGGCGCGACGCCCTGCGTGTGGt                                                               <  1:34939641/68‑1 (MQ=255)
       agagACAACTCATGCATTTTCGCCACTCCTGCGACCAAACAGCAGGGCGCGACGCCCTGCGTGTGGt                                                               >  1:2444802/1‑67 (MQ=255)
       agagACAACTCATGCATTTTCGCCACTCCTGCGACCAAACAGCAGGGCGCGACGCCCTGCGTGTGGt                                                               >  1:352458/1‑67 (MQ=255)
       agagACAACTCATGCATTTTCGCCACTCCTGCGACCAAACAGCAGGGCGCGACGCCCTGCGTGTGGt                                                               >  1:15232366/1‑67 (MQ=255)
         agccAACTCATGCATTTTCGCAACTCCTGCGCCCAAACAGCAGGGCGCGACGACCGGCGTGTGGTACa                                                            >  1:1141048/4‑68 (MQ=255)
         agaCAACTCATGCATTTTCGCCACTCCTGCGACCAAACAGCAGGGCGCGACGCCCTGCGTGTGGTACa                                                            >  1:29575974/1‑68 (MQ=255)
         agaCAACTCATGCATTTTCGCCACTCCTGCGACCAAACAGCAGGGCGCGACGCCCTGCGTGTGGTACa                                                            >  1:36815272/1‑68 (MQ=255)
         agaCAACTCATGCATTTTCGCCACTCCTGCGACCAAACAGCAGGGCGCGACGCCCTGCGTGTGGTACa                                                            >  1:33468537/1‑68 (MQ=255)
         agaCAACTCATGCATTTTCGCCACTCCTGCGACCAAACAGCAGGGCGCGACGCCCTGCGTGTGGTACa                                                            >  1:7231696/1‑68 (MQ=255)
          gaCAACTCATGCATTTTCGCCACTCCTGCGACCAAACAGCAGGGCGCGACGCCCTGCGTGTGGTACa                                                            <  1:28833728/67‑1 (MQ=255)
          gaCAACTCATGCATTTTCGCCACTCCTGCGACCAAACAGCAGGGCGCGACGCCCTGCGTGTGGTACa                                                            <  1:6860544/67‑1 (MQ=255)
          gaCAACTCATGCATTTTCGCCACTCCTGCGACCAAACAGCAGGGCGCGACGCCCTGCGTGTGGTACa                                                            <  1:1239595/67‑1 (MQ=255)
            cAACTCATGCATTTTCGCCACTCCTGCGACCAAACAGCAGGGCGCGACGCCCTGCGTGTGGTACAt                                                           <  1:18600436/66‑1 (MQ=255)
              aCTCATGCATTTTCGCCACTCCTGCGACCAAACAGCAGGGCGCGACGCCCTGCGTGTGGTACATCCgg                                                       >  1:13434925/1‑68 (MQ=255)
               cTCATGCATTTTCGCCACTCCTGCGACCAAACAGCAGGGCGCGACGCCCTGCGTGTGGTACATCCGGa                                                      >  1:375803/1‑68 (MQ=255)
                 cATGCATTTTCGCCACTCCTGCGACCAAACAGCAGGGCGCGACGCCCTGCGTGTGGTACATCCGGAtt                                                    <  1:16540224/68‑1 (MQ=255)
                   tGCATTTTCGCCACTCCTGCGACCAAACAGCAGGGCGCGACGCCCTGCGTGTGGTACATCCGGATTCg                                                  >  1:32362706/1‑68 (MQ=255)
                    gCATTTTCGCCACTCCTGCGACCAAACAGCAGGGCGCGACGCCCTGCGTGTGGTACATCCGGATTCGt                                                 <  1:3015630/68‑1 (MQ=255)
                     cATTTTCGCCACTCCTGCGACCAAACAGCAGGGCGCGACGCCCTGCGTGTGGTACATCCGGATTCGTg                                                >  1:5674313/1‑68 (MQ=255)
                     cATTTTCGCCACTCCTGCGACCAAACAGCAGGGCGCGACGCCCTGCGTGTGGTACATCCGGATTCGTg                                                >  1:4198742/1‑68 (MQ=255)
                      aTTTTCGCCACTCCTGCGACCAAACAGCAGGGCGCGACGCCCTGCGTGTGGTACATCCGGATTCGTg                                                >  1:26152519/1‑67 (MQ=255)
                      aTTTTCGCCACTCCTGCGACCAAACAGCAGGGCGCGACGCCCTGCGTGTGGTACATCCGGATTCGTGa                                               <  1:19654349/68‑1 (MQ=255)
                            gCCACTCCTGCGACCAAACAGCAGGGCGCGACGCCCTGCGTGTGGTACATCCGGATTCGTGACTGGCa                                         >  1:22769957/1‑68 (MQ=255)
                            gCCACTCCTGCGACCAAACAGCAGGGCGCGACGCCCTGCGTGTGGTACATCCGGATTCGTGACTGGCa                                         >  1:203416/1‑68 (MQ=255)
                            gCCACTCCTGCGACCAAACAGCAGGGCGCGACGCACTGCGTGTGGTACAAACGGATTCGTGACTGGCa                                         >  1:14121356/1‑68 (MQ=255)
                             ccACTCCTGCGACCAAACAGCAGGGCGCGACGCCCTGCGTGTGGTACATCCGGATTCGTGACTGGCa                                         >  1:3616303/1‑67 (MQ=255)
                              aatccggacgtaccacacgccgggcggcgcgccctgcGTGTGGTACATCCGGATTCGTGACTGGCAGc                                       <  1:9791825‑M2/31‑1 (MQ=255)
                               aCTCCTGCGACCAAACAGCAGGGCGCGACGCCCTGCGTGTGGTACATCCGGATTCGTGACTGGCAGCg                                      <  1:13184930/68‑1 (MQ=255)
                                cTCCTGCGACCAAACAGCAGGGCGCGACGCCCTGCGTGTGGTACATCCGGATTCGTGACTGGCAGCGa                                     <  1:28083828/68‑1 (MQ=255)
                                   cTGCGACCAAACAGCAGGGCGCGACGCCCTGCGTGTGGTACATCCGGATTCGTGACTGGCAGCGAAAg                                  <  1:26660490/68‑1 (MQ=255)
                                    tGCGACCAAACAGCAGGGCGCGACGCCCTGCGTGTGGTACATCCGGATTCGTGACTGGCAGCGAAAgg                                 <  1:27228948/68‑1 (MQ=255)
                                     gCGACCAAACAGCAGGGCGCGACGCCCTGCGTGTGGTACATCCGGATTCGTGACTGGCAGCGAAAGGa                                <  1:20121459/68‑1 (MQ=255)
                                     gCGACCAAACAGCAGGGCGCGACGCCCTGCGTGTGGTACATCCGGATTCGTGACTGGCAGCGAAAGGa                                <  1:12649336/68‑1 (MQ=255)
                                       gACCAAACAGCAGGGCGCGACGCCCTGCGTGTGGTACATCCGGATTCGTGACTGGCAGCGAAAGGATc                              >  1:19140192/1‑68 (MQ=255)
                                       gACCAAACAGCAGGGCGCGACGCCCTGCGTGTGGTACATCCGGATTCGTGACTGGCAGCGAAAGGATc                              >  1:31901003/1‑68 (MQ=255)
                                       gACCAAACAGCAGGGCGCGACGCCCTGCGTGTGGTACATCCGGATTCGTGACTGGCAGCGAAAGGATc                              >  1:18401038/1‑68 (MQ=255)
                                       gACCAAACAGCAGGGCGCGACGCCCTGCGTGTGGTACATCCGGATTCGTGACTGGCAGCGAAAGGATc                              >  1:2095655/1‑68 (MQ=255)
                                       gACCAAACAGCAGGGCGCGACGCCCTGCGTGTGGTACATCCGGATTCGTGACTGGCAGCGAAAGGATc                              >  1:35493880/1‑68 (MQ=255)
                                       gACCAAACAGCAGGGCGCGACGCCCTGCGTGTGGTACATCCGGATTCGTGACTGGCAGCGAAAGGATc                              >  1:7541851/1‑68 (MQ=255)
                                       gACCAAACAGCAGGGCGCGACGCCCTGCGTGTGGTACATCCGGATTCGTGACTGGCAGCGAAAGGATc                              >  1:15337050/1‑68 (MQ=255)
                                        taccacacgcagggcgtcgcgccctgcGTGTGGTACATCCGGATTCGTGACTGGCAGCGAAAGGATCa                             >  1:8985642‑M2/28‑68 (MQ=255)
                                        taccacacgcagggcgtagcgccctgcGGGTGGTACATCCGGATTCGTGACTGGAAGCGAAAGGATCa                             >  1:31766672‑M2/28‑68 (MQ=255)
                                        aCCAAACAGCAGGGCGCGCCGCCCTGCGTGTGGTACATCCGGATTCGTGACTGGCAGCGAAAGGATCa                             >  1:23173260/1‑68 (MQ=255)
                                        aCCAAACAGCAGGGCGCGACGCCCTGCGTGTGGTACATCCGGATTCGTGACTGGCAGCGAAAGGATCa                             >  1:16393207/1‑68 (MQ=255)
                                         ccAAACAGCAGGGCGCGACGCCCTGCGTGTGGTACATCCGGATTCGTGACTGGCAGCGAAAGGATCAt                            >  1:32570407/1‑68 (MQ=255)
                                          cAAACAGCAGGGCGCGACGCCCTGCGTGTGGTACATCCGGATTCGTGACTGGCAGCGAAAGGAGCAtt                           <  1:10157356/68‑1 (MQ=255)
                                             aCAGCAGGGCGCGACGCCCTGCGTGTGGTACATCCGGATTCGTGACTGGCAGCGAAAGGATCATTCGt                        >  1:22638126/1‑68 (MQ=255)
                                               gcagggcgtcgcgccctgctGTTTGGTACATCCGGATTCGTGACTGGCAGCGAAAGGATCATTCGTgc                      >  1:22435882‑M2/21‑68 (MQ=255)
                                               agcagGGCGCGACGCCCTGCGTGTGGTACATCCGGATTCGTGACTGGCAGCGAAAGGATCATTCGTgc                      >  1:3217369/1‑68 (MQ=255)
                                                GCAGGGCGCGACGCCCTGCGTGTGGTACATCCGGATTCGTGACTGGCAGCGAAAGGATCATTCGTgc                      <  1:15981301‑M1/67‑1 (MQ=255)
                                                GCAGGGCGCGACGCCCTGCGTGTGGTACATCCGGATTCGTGACTGGCAGCGAAAGGATCATTCGTgc                      <  1:17189699‑M1/67‑1 (MQ=255)
                                                GCAGGGCGCGACGCCCTGCGTGTGGTACATCCGGATTCGTGACTGGCAGCGAAAGGATCATTCGTgc                      <  1:19292306‑M1/67‑1 (MQ=255)
                                                  AGGGCGCGACGCCCTGCGTGTGGTACATCCGGATTCGTGACTGGCAGCGAAAGGATCATTCGTGCGCa                   <  1:4821811‑M1/68‑1 (MQ=255)
                                                  AGGGCGCGACGCCCTGCGTGTGGTACATCCGGATTCGTGACTGGCAGCGAAAGGATCATTCGTGCGCa                   <  1:8326256‑M1/68‑1 (MQ=255)
                                                  AGGGCGCGACGCCCTGCGTGTGGTACATCCGGATTCGTGACTGGCAGCGAAAGGATCATTCGTGCGCa                   <  1:2375226‑M1/68‑1 (MQ=255)
                                                  AGGGCGCGACGCCCTGCGTGTGGTACATCCGGATTCGTGACTGGCAGCGAAAGGATCATTCGTGCGCa                   <  1:33079096‑M1/68‑1 (MQ=255)
                                                  AGGGCGCGACGCCCTGCGTGTGGTACATCCGGATTCGTGACTGGCAGCGAAAGGATCATTCGTGCGCa                   <  1:1990737‑M1/68‑1 (MQ=255)
                                                  AGGGCGCGACGCCCTGCGTGTGGTACATCCGGATTCGTGACTGGCAGCGAAAGGATCATTCGTGCGCa                   <  1:29947114‑M1/68‑1 (MQ=255)
                                                  AGGGCGCGACGCCCTGCGTGTGGTACATCCGGATTCGTGACTGGCAGCGAAAGGATCATTCGTGCGCa                   <  1:2160209‑M1/68‑1 (MQ=255)
                                                  AGGGCGCGACGCCCTGCGTGTGGTACATCCGGATTCGTGACTGGCAGCGAAAGGATCATTCGTGCGCa                   <  1:22012665‑M1/68‑1 (MQ=255)
                                                     GCGCGACGCCCTGCGTGTGGTACATCCTGATTCGTGACTGGCAGCGAAAGGATCATTCGTGCGCAGTc                <  1:34239665‑M1/68‑1 (MQ=255)
                                                     GCGCGACGCCCTGCGTGTGGTACATCCGGATTCGTGACTGGCAGCGAAAGGATCATTCGTGCGCa                   >  1:15149614‑M1/1‑65 (MQ=255)
                                                     GCGCGACGCCCTGCGTGTGGTACATCCGGATTCGTGACTGGCAGCGAAAGGATCATTCGTGCGCAGt                 >  1:6603335‑M1/1‑67 (MQ=255)
                                                     GCGCGACGCCCTGCGTGTGGTACATCCGGATTCGTGACTGGCAGCGAAAGGATCATTCGTGCGCAGt                 >  1:6229499‑M1/1‑67 (MQ=255)
                                                     GCGCGACGCCCTGCGTGTGGTACATCCGGATTCGTGACTGGCAGCGAAAGGATCATTCGTGCGCAGt                 >  1:7511216‑M1/1‑67 (MQ=255)
                                                     GCGCGACGCCCTGCGTGTGGTACATCCGGATTCGTGACTGGCAGCGAAAGGATCATTCGTGCGCAGTc                <  1:27513822‑M1/68‑1 (MQ=255)
                                                     GCGCGACGCCCTGCGTGTGGTACATCCGGATTCGTGACTGGCAGCGAAAGGATCATTCGTGCGCAGTc                <  1:22246120‑M1/68‑1 (MQ=255)
                                                     GCGCGACGCCCTGCGTGTGGTACATCCGGATTCGTGACTGGCAGCGAAAGGATCATTCGTGCGCAGTc                <  1:3081700‑M1/68‑1 (MQ=255)
                                                     GCGCGACGCCCTGCGTGTGGTACATCCGGATTCGTGACTGGCAGCGAAAGGATCATTCGTGCGCAGTc                <  1:10987143‑M1/68‑1 (MQ=255)
                                                     GCGCGACGCCCTGCGTGTGGTACATCCGGATTCGTGACTGGCAGCGAAAGGATCATTCGTGCGCAGTc                <  1:10369448‑M1/68‑1 (MQ=255)
                                                      CGCGACGCCCTGCGTGTGGTACATCCGGATTCGTGACTGGCAGCGAAAGGATCATTCGTGCGCAGTc                >  1:15455323‑M1/1‑67 (MQ=255)
                                                          aCGCCCTGCGTGTGGTACATCCGGATTCGTGACTGGCAGCGAAAGGATCATTCGTGCGCAGTCATCCg           >  1:8126078/1‑68 (MQ=255)
                                                           cgccctgcGTGTGGTACATCCGGATTCGTGACTGGCAGCGAAAGGATCATTCGTGCGCAGTCATCCg           <  1:24137704‑M2/59‑1 (MQ=255)
                                                           cgccctgcGTGTGGTACATCCGGATTCGTGACTGGCAGCGAAAGGATCATTCGTGCGCAGTCATCCg           >  1:11956064‑M2/9‑67 (MQ=255)
                                                           cgccctgcGTGTGGTACATCCGGATTCGTGACTGGCAGCGAAAGGATCATTCGTGCGCAGTCATCCg           <  1:32823118‑M2/59‑1 (MQ=255)
                                                           cgccctgcGTGTGGTACATCCGGATTCGTGACTGGCAGCGAAAGGATCATTCGTGCGCAGTCATCCGt          <  1:14688736‑M2/60‑1 (MQ=255)
                                                           cgcccggcGTGTGGTACATCCGGATTCGTGACTGGCAGCGAAAGGATCATTCGTGCGCAGTCATCCg           <  1:18023118‑M2/59‑1 (MQ=255)
                                                            gccctgcGTGTGGTACATCCGGATTCGTGCCTGGCAGCGAAAGGATCATTCGTGCGCAGTCATCCGTc         >  1:14334843‑M2/8‑68 (MQ=255)
                                                            gccctgcGTGTGGTACATCCGGATTCGTGACTGGCAGCGAAAGGATCATTCGTGCGCAGTCATCCGTc         >  1:2687703‑M2/8‑68 (MQ=255)
                                                              cctgcGTGTGGTACATCCGGATTCGTGACTGGCAGCGAAAGGATCATTCGTGCGCAGTCATCCGTCAg       >  1:1572885‑M2/6‑68 (MQ=255)
                                                               ctgcGTGTGGTACATCCGGATTCGTGACTGGCAGCGAAAGGATCATTCGTGCGCAGTCATCCGTCAgg      <  1:29131827‑M2/64‑1 (MQ=255)
                                                                 gcGTGTGGGACATCCGGATTCGTGACTGGCAGCGAAAGGATCATTCGTGCGCAGTCATCCGTCAGGCg    <  1:8680742‑M2/66‑1 (MQ=255)
                                                                  cGTGGGGTACACCCGGATGCGTGACTGGCAGCGAAAGGATCATTCGTGCGCAGTCATCCGTCAGGCg    <  1:11197343‑M2/66‑1 (MQ=255)
                                                                   gtgtGGTACATCCGGATTCGTGACTGGCAGCGAAAGGATCATTCGTGCGCAGTCATCCGTCAGGCGtt  >  1:25558578/1‑68 (MQ=255)
                                                                   gtgtGGTACATCCGGATTCGTGACTGGCAGCGAAAGGATCATTCGTGCGCAGTCATCCGTCAGGCGtt  >  1:33900340/1‑68 (MQ=255)
                                                                   |                                                                   
CTGGCAAAGAGACAACTCATGCATTTTCGCCACTCCTGCGACCAAACAGCAGGGCGCGACGCCCTGCGTGTGGTACATCCGGATTCGTGACTGGCAGCGAAAGGATCATTCGTGCGCAGTCATCCGTCAGGCGTT  >  CP009273/3133654‑3133788

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.