| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 3215213 = | 264 (0.590) | 29 (0.080) | 10/96 | NT | 10.9% | coding (389/984 nt) | ebgR | transcriptional repressor |
| ? | CP009273 | 3215274 = | 250 (0.660) | coding (450/984 nt) | ebgR | transcriptional repressor | |||||
Only 100 of 369 total aligned reads displayed.
GGCTTACCAGACATTAAAAACGTCACCGGTATTTTAATTGTCGGCAAACCCACGCCCGCCCTGCGCGCCGCTGCCAGCGCGTTGACCGACAATATCTGTTTTATCGACTTTCACGAACCCGGCAGCGGTTACGAT > CP009273/3215146‑3215280 | ggCTTACCAGACATTAAAAACGTCACCGGTATTTTAATTGTCGGCAAACCCACGCCCGCCCTgcgcgc < 1:30823124/68‑1 (MQ=255) gCTTAGCAGACATTAAAAACGTCACCGGTATTTTAATTGTCGGCAAACCCACGCCGGCCCTGCGcgcc > 1:35929204/1‑68 (MQ=255) gttgatatagaagtcgatgatttctttactgatgcgtgccagatcgatatccaccgcatcgtaacc < 1:16480933‑M1/2‑1 (MQ=255) gttgatatagaagtcgatgatttctttactgatgcgtgccagatcgatatccaccgcatcgtaacc < 1:27302663‑M1/2‑1 (MQ=255) ttgatatagaagtcgatgatttctttactgatgcgtgccagatcgatatccaccgcatcgtaacc < 1:20866869‑M1/2‑1 (MQ=255) ttgatatagaagtcgatgatttctttactgatgcgtgccagatcgatatccaccgcatcgtaaCCGc > 1:30277406‑M1/64‑67 (MQ=255) ttgatatagaagtcgatgatttctttactgatgcgtgccagatcgatatccaccgcatcgtaaCCGc > 1:16161610‑M1/64‑67 (MQ=255) tACCAGACATTAAAAACGTCACCGGTATTTTAATTGTCGGCAAACCCACGCCCGCCCTGCGCGCCGCt < 1:11361948/68‑1 (MQ=255) tACCAGACATTAAAAACGTCACCGGTATTTTAATTGTCGGCAAACCCACGCCCGCCCTGCGCGCCGCt < 1:628238/68‑1 (MQ=255) tgatatagaagtcgatgatttctttactgatgcgtgccagatcgatatccaccgcatcgtaaCCGCt < 1:26926747‑M1/5‑1 (MQ=255) tgatatagaagtcgatgatttctttactgatgcgtgccagatcgatatccaccgcatcgtaaCCGCt < 1:28472003‑M1/5‑1 (MQ=255) tgatatagaagtcgatgatttctttactgatgcgtgccagatcgatatccaccgcatcgtaaCCGCt > 1:36975288‑M1/63‑67 (MQ=255) tgatatagaagtcgatgatttctttactgatgcgtgccagatcgatatccaccgcatcgtaaCCGCt > 1:867325‑M1/63‑67 (MQ=255) tgatatagaagtcgatgatttctttactgatgcgtgccagatcgatatccaccgcatcgtaaCCGCt > 1:911921‑M1/63‑67 (MQ=255) ccAGACATTAAAAACGTCACCGGTATTTTAATTGTCGGCAAACCCACGCCCGCCCTGCGCGCCGCTg > 1:2632266/1‑67 (MQ=255) ccAGACATTAAAAACGTCACCGGTATTTTAATTGTCGGCAAACCCACGCCCGCCCTGCGCGCCGCTGc < 1:29137436/68‑1 (MQ=255) cAGACATTAAAAACGTCACCGGTATTTTAATTGTCGGCAAACCCACGCCCGCCCTGCGCGCCGCTGcc > 1:10043640/1‑68 (MQ=255) cAGACATTAAAAACGTCACCGGTATTTTAATTGTCGGCAAACCCACGCCCGCCCTGCGCGCCGCTGcc > 1:9311837/1‑68 (MQ=255) atatagaagtcgatgatttctttactgatgcgtgccagatcgatatccaccgcatcgtaaCCGCTGcc < 1:35375682‑M1/8‑1 (MQ=255) aGACATTAAACACGTCACCGGGATTTTAATTGTCGGCAAACCCACGCCCGCCCTGCGCGCCGCTGCCa > 1:16869812/1‑68 (MQ=255) aCATTAAAAACGTCACCGGTATTTTAATTGTCGGCAAACCCACGCCCGCCCTGCGCGCCGCTGCCAgc > 1:8525301/1‑68 (MQ=255) aCATTAAAAACGTCACCGGTATTTTAATTGTCGGCAAACCCACGCCCGCCCTGCGCGCCGCTGCCAgc > 1:24248970/1‑68 (MQ=255) cATTAAAAACGTCACCGGTATTTTAATTGTCGGCAAACCCACGCCCGCCCTGCGCGCCGCTGCCAgcg < 1:10439792/68‑1 (MQ=255) aTTAAAAACGTCACCGGTATTTTAATTGTCGGCAAACCCACGCCCGCCCTGCGCGCCGCTGCCAgcgc < 1:14205106/68‑1 (MQ=255) aaaCGTCACCGGTATTTTAATTGTCGGCAAACCCACGCCCGCCCTGCGCGCCGCTGCCAGCGCGTTGa < 1:13652403/68‑1 (MQ=255) aaCGTCACCGGTATTTTAATTGTCGGCAAACCCACGCCCGCCCTGCGCGCCGCTGCCAGCGCGTTgc > 1:31744079/1‑66 (MQ=255) aaCGTCACCGGTATTTTAATTGTCGGCAAACCCACGCCCGCCCTGCGCGCCGCTGCCAGCGCGTTGa > 1:36513822/1‑67 (MQ=255) cGTCACCGGTATTTTAATTGTCGGCAAACCCACGCCCGCCCTGCGCGCCGCTGCCAGCGCGTTGccc > 1:2659108/1‑67 (MQ=255) cGTCACCGGTATTTTAATTGTCGGCAAACCCACGCCCGCCCTGCGCGCCGCTGCCAGCGCGTTGACCg > 1:29661487/1‑68 (MQ=255) cGTCACCGGTATTTTAATTGTCGGCAAACCCACGCCCGCCCTGCGCGCCGCTGCCAGCGCGTTGACCg < 1:30431040/68‑1 (MQ=255) cGTCACCGGTATTTTAATTGTCGGCAAACCCACGCCCGCCCTGCGCGCCGCTGCCAGCGCGTTGACCg > 1:11606050/1‑68 (MQ=255) cGTCACCGGTATTTTAATTGTCGGCAAACCCACGCCCGCCCTGCGCGCCGCTGCCAGCGCGTTGACCg > 1:8987147/1‑68 (MQ=255) ggcACCGGTATTTTAATTGTCGGCAAACCCACGCCCGCCCTGCGCGCCGCTGCCAGCGCGTTGACCGa < 1:27642224/66‑1 (MQ=255) cACCGGTATTTTAATTGTCGGCAAACCCACGCCCGCCCTGCGCGCCGCTGCCAGCGCGTTGACCGACa < 1:24012945/68‑1 (MQ=255) ccGGTATTTTAATTGTCGGCAAACCCACGCCCGCCCTGCGCGCCGCTGCCAGCGCGTTGACCGACAat < 1:22928875/68‑1 (MQ=255) cGGTATTTTAATTGTCTGAAAACCCACGCCCGCCATGCTCTCCGCTGCCAGCGCGTTGACCGACAata < 1:18868288/68‑1 (MQ=255) cGGTATTTTAATTGTCGGCAAACCCACGCCCGCCCTGCGCGCCGCTGCCAGCGCGTTGACCGACAata < 1:18556557/68‑1 (MQ=255) cGGTATTTTAATTGTCGGCAAACCCACGCCCGCCCTGCGCGCCGCTGCCAGCGCGTTGACCGACAata < 1:32540617/68‑1 (MQ=255) cGGTATTTTAATTGTCGGCAAACCCACGCCCGCCCTGCGCGCCGCTGCCAGCGCGTTGACCGACAata < 1:7257308/68‑1 (MQ=255) cGGTATTTTAATTGTCGGCAAACCCACGCCCGCCCTGCGCGCCGCTGCCAGCGCGTTGACCGACAata < 1:7451974/68‑1 (MQ=255) ggTATTTTAATTGTCGGCAAACCCACGCCCGCCCTGCGCGCCGCTGCCAGCGCGTTGACCGACAatat < 1:19670669/68‑1 (MQ=255) aTTTTAATTGTCGGCAAACCCACGCCCGCCCTGCGCGCCGCTGCCAGCGCGTTGACCGACAATATCt < 1:27427354/67‑1 (MQ=255) aTTTTAATTGTCGGCAAACCCACGCCCGCCCTGCGCGCCGCTGCCAGCGCGTTGACCGACAATATCt < 1:17548456/67‑1 (MQ=255) ttttAATTGTCGGCAAACCCACGCCCGCCCTGCGCGCCGCTGCCAGCGCGTTGACCGACAATATCTGt < 1:21105189/68‑1 (MQ=255) ttttAATTGTCGGCAAACCCACGCCCGCCCTGCGCGCCGCTGCCAGCGCGTTGACCGACAATATCTGt < 1:12205016/68‑1 (MQ=255) ttttAATTGTCGGCAAACCCACGCCCGCCCTGCGCGCCGCTGCCAGCGCGTTGACCGACAATATCTGt < 1:10915680/68‑1 (MQ=255) tttAATTGTCGGCAAACCCACGCCCGCCCTGCGCGCCGCTGCCAGCGCGTTGACCGACAATATCTGtt > 1:8225917/1‑68 (MQ=255) ttAATTGTCGGCAAACCCACGCCCGCCCTGCGCGCCGCTGCCAGCGCGTTGACCGACAATATCTGttt < 1:477836/68‑1 (MQ=255) tAATTGTCGGCAAACCCACGCCCGCCCTGCGCGCCGCTGCCAGCGCGTTGACCGACAATATCTGtttt < 1:21728043/68‑1 (MQ=255) aaTTGTCGGCAAACCCACGCCCGCCCTGCGCGCCGCTGCCAGCGCGTTGACCGACAATATCTGTTTTa > 1:33578881/1‑68 (MQ=255) aaTTGTCGGCAAACCCACGCCCGCCCTGCGCGCCGCTGCCAGCGCGTTGACCGACAATATCTGTTTTa > 1:36851992/1‑68 (MQ=255) aaTTGTCGGCAAACCCACGCCCGCCCTGCGCGCCGCTGCCAGCGCGTTGACCGACAATATCTGTTTTa > 1:32415247/1‑68 (MQ=255) aaTTGTCGGCAAACCCACGCCCGCCCTGCGCGCCGCTGCCAGCGCGTTGACCGACAATATCTGTTTTa > 1:805126/1‑68 (MQ=255) aaTTGTCGGCAAACCCACGCCCGCCCTGCGCGCCGCTGCCAGCGCGTTGACCGACAATATCTGTTTTa > 1:29881660/1‑68 (MQ=255) aaTTGTCGGCAAACCCACGCCCGCCCTGCGCGCCGCTGCCAGCGCGTTGACCGACAATATCTGTTTTa > 1:7637820/1‑68 (MQ=255) aaTTGTCGGCAAACCCACGCCCGCCCTGCGCGCCGCTGCCAGCGCGTTGACCGACAATATCTGTTTTa > 1:19169999/1‑68 (MQ=255) aaTTGTCGGCAAACCCACGCCCGCCCTGCGCGCCGCTGCCAGCGCGTTGACCGACAATATCTGTTTTa > 1:3770325/1‑68 (MQ=255) aaTTGTCGGCAAACCCACGCCCGCCCTGCGCGCCGCTGCCAGCGCGTTGACCGACAATATCTGTTTTa > 1:12466395/1‑68 (MQ=255) aTTGTCGGCAAACCCACGCCCGCCCTGCGCGCCGCTGCCAGCGCGTTGACCGACAATATCTGTTTTa > 1:36341924/1‑67 (MQ=255) ttGTCGGCAAACCCACGCCCGCCCTGCGCGCCGCTGCCAGCGCGTTGACCGACAATATCTGTTTTATc > 1:27197034/1‑68 (MQ=255) ttGTCGGCAAACCCACGCCCGCCCTGCGCGCCGCTGCCAGCGCGTTGACCGACAATATCTGTTTTATc > 1:33499939/1‑68 (MQ=255) tGTCGGCAAACCCACGCCCGCCCTGCGCGCCGCTGCCAGCGCGTTGACCGACAATATCTGTTTTATCg > 1:50126/1‑68 (MQ=255) tGTCGGCAAACCCACGCCCGCCCTGCGCGCCGCTGCCAGCGCGTTGACCGACAATATCTGTTTTATCg > 1:7161855/1‑68 (MQ=255) tGTCGGCAAACCCACGCCCGCCCTGCGCGCCGCTGCCAGCGCGTTGACCGACAATATCTGTTTTATCg > 1:33351274/1‑68 (MQ=255) gTCGGCAAACCCACGCCCGCCCTGCGCGCCGCTGCCAGCGCGTTGACCGACAATATCTGTTTTATCGa < 1:26080882/68‑1 (MQ=255) cGGCAAACCCACGCCCGCCCTGCGCGCCGCTGCCAGCGCGTTGACCGACAATATCTGTTTTATCGAc < 1:12567355/67‑1 (MQ=255) cGGCAAACCCACGCCCGCCCTGCGCGCCGCTGCCAGCGCGTTGACCGACAATATCTGTTTTATCGAc < 1:6680651/67‑1 (MQ=255) cGGCAAACCCACGCCCGCCCTGCGCGCCGCTGCCAGCGCCTTGACCGACAATATCTGTTTTATCGAc < 1:34259053/67‑1 (MQ=255) cAAACCCACGCCCGCCCTGCGCGCCGCTGCCAGCGCGTTGACCGACAATATCTGTTTTATCGACttt < 1:34613249/67‑1 (MQ=255) cAAACCCACGCCCGCCCTGCGCGCCGCTGCCAGCGCGTTGACCGACAATATCTGTTTTATCGACttt < 1:20110497/67‑1 (MQ=255) aaaCCCACGCCCGCCCTGCGCGCCGCTGCCAGCGCGTTGACCGACAATATCTGTTTTATCGACTTTCa < 1:16780531/68‑1 (MQ=255) tcgatatccaccgcatcgtaaCCGCTGCCAGCGCGTTGACCGACAATATCTGTTTTATCGACTTTCAc < 1:7901990‑M1/47‑1 (MQ=255) tcgatatccaccgcatcgtaaCCGCTGCCAGCGCGGTGACCGGCAATATCTGTTTTATCGACTTTCAc < 1:15608061‑M1/47‑1 (MQ=255) cccACGCCCGCCCTGCGCGCCGCTGCCAGCGCGTTGACCGACAATATCTGTTTTATCGACTTTCACGa < 1:33000671/68‑1 (MQ=255) cccACGCCCGCCCTGCGCGCCGCTGCCAGCGCGTTGACCGACAATATCTGTTTTATCGACTTTCACGa < 1:561088/68‑1 (MQ=255) atccaccgcatcgtaaCCGCTGCCAGCGCGTTGACCGACAATTTGTGTGTTATCGCCTTTCACGAAc < 1:2537435‑M1/51‑1 (MQ=255) ccaccgcatcgtaaCCGCTGCCAGCGCGTTGACCGACAATATCTGTTTTATCGACTTTCACGAACCCg < 1:35572327‑M1/54‑1 (MQ=255) ccaccgcatcgtaaCCGCTGCCAGCGCGTTGACCGACAATATCTGTTTTATCGACTTTCACGAACCCg < 1:31407192‑M1/54‑1 (MQ=255) ccaccgcatcgtaaCCGCTGCCAGCGCGGTGACCGCCAATATCTGTTTTATCGACTTTCACGAACCCg < 1:27795769‑M1/54‑1 (MQ=255) cccgcccTGCGCGCCGCTGCCAGCGCGTTGACCGACAATATCTGTTTTATCGACTTTCACGACCCCg > 1:10953631/1‑67 (MQ=255) cccgcccTGCGCGCCGCTGCCAGCGCGTTGACCGACAATATCTGTTTTATCGACTTTCACGAACCCg > 1:33994944/1‑67 (MQ=255) ccgcccTGCGCGCCGCTGCCAGCGCGTTGCCCGACAATATCTGTTTTATCGACTTTCACGAACCCGGc > 1:25080807/1‑68 (MQ=255) accgcatcgtaaCCGCTGCCAGCGCGTTGACCGACAATATCTGTTTTATCGCCTTTCACGAACCCGGc < 1:10633314‑M1/56‑1 (MQ=255) accgcatcgtaaCCGCTGCCAGCGCGTTGACCGACAATATCTGTTTTATCGACTTTCACGAACCCGGc < 1:36093025‑M1/56‑1 (MQ=255) ccgcatcgtaaCCGCTGCCAGCGCGTTGACCGACAATATCTGTTTTATCGACTTTCACGAACCCGGCa < 1:23008768‑M1/57‑1 (MQ=255) gcatcgtaaCCGCTGCCAGCGCGTTGACCGACAATATCTGTTTTATCGACTTTCACGAACCCGGCAGc < 1:4549485‑M1/59‑1 (MQ=255) ccTGCGCGCCGCTGCCAGCGCGTTGACCGACAATATCTGTTTTATCGACTTTCACGAACCCGGCAGCg < 1:22406803/68‑1 (MQ=255) ccTGCGCGCCGCTGCCAGCGCGTTGACCGACAATATCTGTTTTATCGACTTTCACGAACCCGGCAGCg < 1:18197101/68‑1 (MQ=255) ccTGCGCGCCGCTGCCAGCGCGTTGACCGACAATATCTGTTTTATCGACTTTCACGAACCCGGCAGCg > 1:2491627/1‑68 (MQ=255) ccTGCGCGCCGCTGCCAGCGCGTTGACCGACAATATCTGGTTTATCGACTTTCCCGAACCCGGCAGCg > 1:21572566/1‑68 (MQ=255) atcgtaaCCGCTGCCAGCGCGTTGACCGACAATATCTGTTTTATCGACTTTCACGAACCCGGCAGCgg < 1:18661070‑M1/61‑1 (MQ=255) tGCGCGCCGCTGCCAGCGCGTTGACCGACAATATCTGTTTTATCGACTTTCACGAACCCGGCAGCGGt < 1:14642674/68‑1 (MQ=255) gtaaCCGCGGCCAGCGCGTTGACCGACAATTTCTGTTTTATCGACTTTCCCGAACCCGGCCGCGGtt < 1:15372789‑M1/63‑1 (MQ=255) gcgcCGCTGCCAGCGCGTTGACCGACAATATCTGTTTTATCGACTTTCACGAACCCGGCAGCGGTTAc > 1:13033958/1‑68 (MQ=255) gcgcCGCTGCCAGCGCGTTGACCGACAATATCTGTTTTATCGACTTTCACGAACCCGGCAGCGGTTAc > 1:20463215/1‑68 (MQ=255) gccgcTGCCAGCGCGTTGACCGACAATATCTGTTTTATCTACTTTCACGAACCCGGCAGCGGTTACGa < 1:959234/68‑1 (MQ=255) gccgcTGCCAGCGCGTTGACCGACAATATCTGTTTTATCGACTTTCACGAACCCGGCAGCGGTTACg < 1:4229926/67‑1 (MQ=255) gccgcTGCCAGCGCGTTGACCGACAATATCTGTTTTATCGACTTTCACGAACCCGGCAGCGGTTACg < 1:11911753/67‑1 (MQ=255) aCCGCTGCCAGCGCGTTGACCGACAATATCTGTTTTATCGACTTTCACGAACCCGGCAGCGGTTACGa < 1:2386023‑M1/67‑1 (MQ=255) CCGCTGCCAGCGCGTTGACCGACAATATCTGTTTTTTCGCCTTTCACGAACCCGGCAGCGGTTACGAt < 1:5923944‑M1/68‑1 (MQ=255) | GGCTTACCAGACATTAAAAACGTCACCGGTATTTTAATTGTCGGCAAACCCACGCCCGCCCTGCGCGCCGCTGCCAGCGCGTTGACCGACAATATCTGTTTTATCGACTTTCACGAACCCGGCAGCGGTTACGAT > CP009273/3215146‑3215280 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |