| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 1023817 = | NA (NA) | 7 (0.020) | 5/84 | NT | NA | intergenic (+2/+43) | yccU/hspQ | putative CoA‑binding protein/heat shock protein involved in degradation of mutant DnaA; hemimethylated oriC DNA‑binding protein |
| ? | CP009273 | 1023851 = | NA (NA) | intergenic (+36/+9) | yccU/hspQ | putative CoA‑binding protein/heat shock protein involved in degradation of mutant DnaA; hemimethylated oriC DNA‑binding protein | |||||
Only 100 of 430 total aligned reads displayed.
TTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGTCTGCGCCAGCTCATCCA > CP009273/1023784‑1023918 | tGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGt > 1:22713120/1‑68 (MQ=255) tGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGt < 1:17389527/68‑1 (MQ=255) tGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGt < 1:15385332/68‑1 (MQ=255) tGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAAACCCCGGAAGGCAAAAACCTTCCGGGGATTTGt < 1:23760748/68‑1 (MQ=255) agaTCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTc > 1:32473534/1‑68 (MQ=255) agaTCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTc > 1:27855688/1‑68 (MQ=255) agaTCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTc > 1:26468888/1‑68 (MQ=255) agaTCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTc > 1:21982317/1‑68 (MQ=255) agaTCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTc > 1:4352994/1‑68 (MQ=255) agaTCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTc > 1:6765273/1‑68 (MQ=255) gaTCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGAtttttta < 1:35564022/67‑2 (MQ=255) ccccgcgtctgcgtaactaatccctgaacaaatccccggaaggtttttgccttccggggatttGt < 1:27017467‑M2/2‑1 (MQ=255) tCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAgg > 1:19484260/1‑68 (MQ=255) tCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAgg > 1:14386364/1‑68 (MQ=255) tCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAgg > 1:19808985/1‑68 (MQ=255) tCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAgg < 1:2025922/68‑1 (MQ=255) tCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAgg < 1:28155081/68‑1 (MQ=255) tCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAgg < 1:12673432/68‑1 (MQ=255) tCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAgg < 1:170535/68‑1 (MQ=255) tCCCTCGCCGGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAgg < 1:7766590/68‑1 (MQ=255) gcgtctgcgtaactaatccctgaacaaatccccggaaggtttttgccttccggggatttGTTCAGGGa < 1:21093221‑M2/9‑1 (MQ=255) cGCCTGGGCGTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTa < 1:2494100/68‑1 (MQ=255) cGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTa < 1:3404154/68‑1 (MQ=255) cGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTa < 1:21728058/68‑1 (MQ=255) cGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTa < 1:32990500/68‑1 (MQ=255) cGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTa < 1:10799573/68‑1 (MQ=255) cGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTa < 1:35771443/68‑1 (MQ=255) cGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTa < 1:13675102/68‑1 (MQ=255) cGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTa < 1:1593524/68‑1 (MQ=255) ctgcgtaactaatccctgaacaaatccccggaaggtttttgccttccggggatttGTTCAGGGATTAg < 1:18723037‑M2/13‑1 (MQ=255) cctgggcctggCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGt > 1:30121492/1‑68 (MQ=255) cctgggcctggCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGt > 1:6125229/1‑68 (MQ=255) cctgggcctggCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGt > 1:3073516/1‑68 (MQ=255) cctgggcctggCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGt > 1:34318684/1‑68 (MQ=255) cctgggcctggCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGAATAGt > 1:33599702/1‑68 (MQ=255) cctgggcctggCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTGCAGGGATTAGt > 1:8765446/1‑68 (MQ=255) cctgggcctggCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTAGTTCAGGGATTAGt > 1:2234963/1‑68 (MQ=255) gcgtatctaaaccctcaccaaatccccgcaaggtttttgccatccggggatttGTTCAGGGATTAGt < 1:11642585‑M2/14‑1 (MQ=255) ctgggcctggCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGt < 1:1576254/67‑1 (MQ=255) gtaactaatccctgaacaaaaccccggacggtttttgccttccggggatttGTTCAGGGATTAGTTAc < 1:9032596‑M2/17‑1 (MQ=255) gtaactaatccctgaacAAATCCCCGGGAGGCAAAACCCTTCCGGGGTTTTGTTCAGGGATTTGTTAc < 1:36291879‑M1/51‑1 (MQ=255) gcctggCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGc > 1:2280248/1‑68 (MQ=255) gcctggCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGc > 1:18012751/1‑68 (MQ=255) gcctggCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGc > 1:25153285/1‑68 (MQ=255) cctggCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGtt > 1:5027155/1‑51 (MQ=255) cctggCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCa > 1:7949605/1‑68 (MQ=255) cctggCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCa > 1:2585132/1‑68 (MQ=255) cctggCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCa > 1:24572545/1‑68 (MQ=255) cctggCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCa > 1:22987966/1‑68 (MQ=255) cctggCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCa > 1:33855501/1‑68 (MQ=255) cctggCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCa > 1:4836835/1‑68 (MQ=255) tggCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGa < 1:9297576/68‑1 (MQ=255) gCCAAATAAAAAATCCCCGGAAGGCAAAGACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGAc > 1:35897331/1‑67 (MQ=255) gCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGAc > 1:10977079/1‑67 (MQ=255) ccAAATAAAAAATCCCCGGTAGGCAAAAACCTTCCGGGGAGTTGTTCAGGGATTAGTTACGCAGAcgc > 1:35297179/1‑68 (MQ=255) ccAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGCcgc > 1:13203647/1‑68 (MQ=255) ccAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGAcgc > 1:27730619/1‑68 (MQ=255) ccAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGAcgc > 1:21585888/1‑68 (MQ=255) ccAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGAcgc > 1:37014936/1‑68 (MQ=255) ccAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGAcgc > 1:11241449/1‑68 (MQ=255) ccAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGAcg < 1:34571156/67‑1 (MQ=255) aTAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCgggg < 1:27648941/68‑1 (MQ=255) aTAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCgggg < 1:14566675/68‑1 (MQ=255) tAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGc < 1:10433755/68‑1 (MQ=255) tAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGc < 1:30919122/68‑1 (MQ=255) tAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGc < 1:29926559/68‑1 (MQ=255) aaaaaaTCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCgggg > 1:22053551/1‑66 (MQ=255) AATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGa < 1:18558730‑M1/68‑1 (MQ=255) AATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGa < 1:5377691‑M1/68‑1 (MQ=255) ATCCCCTGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTTGTTACGCAGACGCGGGGCCTGGAg > 1:36395034‑M1/1‑68 (MQ=255) TCCCCGGAAGACAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGCCGCGGGGCCTGGAgt < 1:28403930‑M1/68‑1 (MQ=255) CCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAgttg < 1:28586620‑M1/68‑1 (MQ=255) CCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAgttgt > 1:407373‑M1/1‑68 (MQ=255) AGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCg > 1:8063220‑M1/1‑68 (MQ=255) AGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCg > 1:10002163‑M1/1‑68 (MQ=255) ataCCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGt < 1:31993965/66‑1 (MQ=255) aaaCCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGt < 1:8341687/68‑1 (MQ=255) aCCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATgg > 1:25579537/1‑65 (MQ=255) aCCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATgg > 1:11937649/1‑65 (MQ=255) ccttccggggatttGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGTCTg < 1:17669859‑M2/54‑1 (MQ=255) cttccggggatttGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGTCTgc < 1:13865707‑M2/55‑1 (MQ=255) cttccggggatttGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGTCTgc < 1:416406‑M2/55‑1 (MQ=255) cttccggggatttGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGTCTgc < 1:7156809‑M2/55‑1 (MQ=255) cttccggggatttGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGTCTgc < 1:16771776‑M2/55‑1 (MQ=255) cttccggggatttGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGTCTgc < 1:33250447‑M2/55‑1 (MQ=255) ggatttGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGTCTGCGCCAGc < 1:13405102‑M2/61‑1 (MQ=255) tttGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATTGTCTGCGCCAGCTCAt < 1:30563272‑M2/65‑1 (MQ=255) tttGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGTCTGCGCCAGCTCa < 1:20855134‑M2/64‑1 (MQ=255) tttGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGTCTGCGCCAGCTCa < 1:23472749‑M2/64‑1 (MQ=255) tttGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGTCTGCGCCAGCTCa < 1:162783‑M2/64‑1 (MQ=255) tttGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGTCTGCGCCAGCTCa < 1:29248850‑M2/64‑1 (MQ=255) tttGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGTCTGCGCCAGCTCa < 1:29728490‑M2/64‑1 (MQ=255) tttGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGTCTGCGCCAGCTCAt < 1:7065114‑M2/65‑1 (MQ=255) ttGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGTCTGCGCCAGCTCATc < 1:31649167‑M2/66‑1 (MQ=255) ttGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGTCTGCGCCAGCTCATc < 1:14989832‑M2/66‑1 (MQ=255) ttGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGTCTGCGCCAGCTCATc < 1:26687751‑M2/66‑1 (MQ=255) ttGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGTCTGCGCCAGCTCATc < 1:14094409‑M2/66‑1 (MQ=255) ttGTACAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGTCTGCGCCAGCTCATc < 1:9702036‑M2/66‑1 (MQ=255) tGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGTCTGCGCCAGCTCATcc < 1:5708788‑M2/67‑1 (MQ=255) tGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGTCTGCGCCAGCTCATcc > 1:31054363‑M2/2‑68 (MQ=255) | TTGAGATCCCTCGCCTGGGCCTGGCCAAATAAAAAATCCCCGGAAGGCAAAAACCTTCCGGGGATTTGTTCAGGGATTAGTTACGCAGACGCGGGGCCTGGAGTTGTTTGCGGATGGTCTGCGCCAGCTCATCCA > CP009273/1023784‑1023918 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |