New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 = 2499292379 (0.850)22 (0.060) 12/98 NT 5.6% coding (820/1086 nt) ypdF Xaa‑Pro aminopeptidase
?CP009273 = 2499321 410 (1.050)coding (791/1086 nt) ypdF Xaa‑Pro aminopeptidase

Only 100 of 529 total aligned reads displayed.

AATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAATTTGATAGACGTTAAACA  >  CP009273/2499256‑2499387
                                                                 |                                                                  
aaTAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCAcg                                                                  >  1:30205449‑M2/1‑66 (MQ=255)
aaTAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCAcg                                                                  >  1:12439726‑M2/1‑66 (MQ=255)
 aTAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCAcg                                                                  <  1:28610267‑M2/67‑3 (MQ=255)
 aTAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCAcg                                                                  <  1:5405264‑M2/67‑3 (MQ=255)
 aTAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCAcg                                                                  <  1:12898811‑M2/67‑3 (MQ=255)
   aGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCAcgccg                                                               <  1:8877024‑M2/68‑6 (MQ=255)
   aGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCAcgccg                                                               <  1:7622367‑M2/68‑6 (MQ=255)
   aGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCAcgccg                                                               <  1:33893633‑M2/68‑6 (MQ=255)
     tCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCAcgccggg                                                             <  1:15708367‑M2/68‑8 (MQ=255)
      cGCCATAACGTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCCACCTGCTGGCAGCGCAcgccggg                                                             >  1:6863756‑M2/1‑60 (MQ=255)
      cGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCAcgccggg                                                             <  1:17378784‑M2/67‑8 (MQ=255)
      cGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCAcgccggg                                                             >  1:12175936‑M2/1‑60 (MQ=255)
      cGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCAcgccggg                                                             >  1:36433628‑M2/1‑60 (MQ=255)
      cGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCAcgccggg                                                             >  1:16828656‑M2/1‑60 (MQ=255)
      cGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCAcgccggg                                                             >  1:24274808‑M2/1‑60 (MQ=255)
      cGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGGCAACCTGCTGGCAGCGCAcgccggg                                                             >  1:4017259‑M2/1‑60 (MQ=255)
         cATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCAcgccgggtca                                                          >  1:32363926‑M2/1‑57 (MQ=255)
           tAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAAt                                                       <  1:19396042/68‑1 (MQ=255)
           tAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAAt                                                       <  1:10258905/68‑1 (MQ=255)
             aCCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATcg                                                     <  1:3267248/68‑1 (MQ=255)
             aCCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATcg                                                     <  1:27684539/68‑1 (MQ=255)
              ccTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATcgc                                                    >  1:15819753/1‑68 (MQ=255)
              ccTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATcgc                                                    >  1:14718214/1‑68 (MQ=255)
               cTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATcgcg                                                   >  1:2838227/1‑68 (MQ=255)
               cTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATcgcg                                                   >  1:562368/1‑68 (MQ=255)
               cTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATcgcg                                                   >  1:2702835/1‑68 (MQ=255)
               cTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATcgcg                                                   >  1:26440324/1‑68 (MQ=255)
               cTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATcgcg                                                   >  1:2597083/1‑68 (MQ=255)
               cTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATcgcg                                                   >  1:24536492/1‑68 (MQ=255)
               cTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATcgcg                                                   >  1:810809/1‑68 (MQ=255)
               cTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATcgcg                                                   >  1:9376771/1‑68 (MQ=255)
               cTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATcgcg                                                   >  1:13915022/1‑68 (MQ=255)
                 gCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGga                                                 >  1:5849146/1‑68 (MQ=255)
                  cTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGgag                                                >  1:30319660/1‑68 (MQ=255)
                   ttCTGTAATGACCCTGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGTCGAATCGCGgag                                                <  1:6145812/67‑1 (MQ=255)
                   ttCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGgaga                                               <  1:1827539/68‑1 (MQ=255)
                   ttCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGgag                                                <  1:19190565/67‑1 (MQ=255)
                   ttCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGgag                                                <  1:21976501/67‑1 (MQ=255)
                     cggtgATGCCCCGGCGCGCGGCATCGTCACCCTGCGGGCAGCGCAcgccgggtcattacagaagcagg                                             >  1:2547892‑M2/3‑45 (MQ=255)
                     cTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCAcgccgggtcattacagaagcagg                                             >  1:25697503‑M2/1‑45 (MQ=255)
                     cTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGAtt                                             >  1:21393221/1‑68 (MQ=255)
                     cTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGAtt                                             >  1:33283526/1‑68 (MQ=255)
                     cTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCGGGCAGCGCAcgccgggtcattacagaagcagg                                             >  1:35652286‑M2/1‑45 (MQ=255)
                        tAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGAtt                                             >  1:10005378/1‑65 (MQ=255)
                        tAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGAtt                                             >  1:21740614/1‑65 (MQ=255)
                         aaTGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATtgct                                          >  1:4644570/1‑67 (MQ=255)
                         aaTGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATtgct                                          >  1:31030304/1‑67 (MQ=255)
                         aaTGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATtgct                                          >  1:18650436/1‑67 (MQ=255)
                          aTGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATtgctgc                                        >  1:8696024/1‑68 (MQ=255)
                           tGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCg                                       >  1:31521180/1‑68 (MQ=255)
                            gACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGa                                      >  1:29871543/1‑68 (MQ=255)
                            gACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGa                                      <  1:16526952/68‑1 (MQ=255)
                              cccGGCGCGCGGCATCGTCAATCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGa                                      >  1:15385035/1‑66 (MQ=255)
                              cccGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGa                                      >  1:18860953/1‑66 (MQ=255)
                              cccGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGa                                      >  1:30020137/1‑66 (MQ=255)
                              cccGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGa                                      >  1:2936197/1‑66 (MQ=255)
                              cccGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGa                                      >  1:23867329/1‑66 (MQ=255)
                              cccGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGa                                      >  1:2286645/1‑66 (MQ=255)
                              cccGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAg                                     <  1:21006453/67‑1 (MQ=255)
                              cccGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAg                                     <  1:14904300/67‑1 (MQ=255)
                                cGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCtg                                  <  1:6585036/68‑1 (MQ=255)
                                 ggCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCtgt                                 >  1:4323465/1‑68 (MQ=255)
                                 ggCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCtgt                                 <  1:18185963/68‑1 (MQ=255)
                                 ggCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCtgt                                 <  1:31992895/68‑1 (MQ=255)
                                   cgcgcgGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCtgtg                                <  1:18796754/67‑1 (MQ=255)
                                   cgcgcgGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCtgtg                                >  1:34529727/1‑67 (MQ=255)
                                   cgcgcgGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCtgtg                                <  1:3401946/67‑1 (MQ=255)
                                   cgcgcgGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCtgtg                                <  1:11911579/67‑1 (MQ=255)
                                   cgcgcgGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCtgtg                                <  1:11223526/67‑1 (MQ=255)
                                   cgcgcgGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCtgtg                                <  1:29005542/67‑1 (MQ=255)
                                   cgcgcgGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCtgtg                                <  1:16000200/67‑1 (MQ=255)
                                      gcgGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCt                             <  1:252659/67‑1 (MQ=255)
                                      gcgGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCt                             >  1:23576621/1‑67 (MQ=255)
                                      gcgGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCt                             <  1:12313867/67‑1 (MQ=255)
                                           aTCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAgg                        <  1:13600964/67‑1 (MQ=255)
                                           aTCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAgg                        <  1:36073087/67‑1 (MQ=255)
                                                cAACCTGCTGGCAGCGCACGCCGGGGGGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAAt                   <  1:10908913/67‑1 (MQ=255)
                                                cAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAAtt                  <  1:4761598/68‑1 (MQ=255)
                                                cAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAAt                   <  1:19718430/67‑1 (MQ=255)
                                                  aCCTGCTGTCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAATTTg                >  1:31294902/1‑68 (MQ=255)
                                                  aCCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAATTTg                >  1:13315070/1‑68 (MQ=255)
                                                  aCCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTACAGGACTATTTg                >  1:35905216/1‑68 (MQ=255)
                                                   ccTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAATTTGa               >  1:13176084/1‑68 (MQ=255)
                                                   ccTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAATTTGa               >  1:20649213/1‑68 (MQ=255)
                                                     tgctgGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAATTTGATa             >  1:34992615/1‑68 (MQ=255)
                                                      gctgGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAATTTGATa             >  1:27903736/1‑67 (MQ=255)
                                                        tgGCAGGGCAGGGCTTGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGTCAATTTGATAGAc          <  1:36883598/68‑1 (MQ=255)
                                                        tgGCAGCGCACGCCGGGGCGAATCGCGGAGATTGGTGCGAGCTGTGCCTGCAGGACAATTTGATAGAc          <  1:20272659/68‑1 (MQ=255)
                                                        tgGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAATTTGATAGAc          <  1:35327673/68‑1 (MQ=255)
                                                        tgGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAATTTGATAGAc          <  1:19939709/68‑1 (MQ=255)
                                                        tgGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAATTTGATAGAc          <  1:7457984/68‑1 (MQ=255)
                                                        tgGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAATTTGATAGAc          <  1:29645805/68‑1 (MQ=255)
                                                        tgGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAATTTGATAGAc          <  1:17661594/68‑1 (MQ=255)
                                                          gCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAATTTGATAGACGt        >  1:14249757/1‑68 (MQ=255)
                                                          gCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAATTTGATAGACGt        >  1:27459059/1‑68 (MQ=255)
                                                           cAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAATTTGATAGACGt        <  1:7203985/67‑1 (MQ=255)
                                                           cAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAATTTGATAGACGt        <  1:11760432/67‑1 (MQ=255)
                                                            aGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAATTTGATAGACCTTa      >  1:24924390/1‑68 (MQ=255)
                                                                cACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAATTTGATAGACGTTAAAca  >  1:22292223/1‑68 (MQ=255)
                                                                 aCGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAATTTGATAGACGTTAAAca  <  1:2326172/67‑1 (MQ=255)
                                                                 |                                                                  
AATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGCCTGCAGGACAATTTGATAGACGTTAAACA  >  CP009273/2499256‑2499387

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.